BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0652200 Os06g0652200|AK108530
(195 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0652200 Hly-III related proteins family protein 318 2e-87
Os02g0179500 Hly-III related proteins family protein 249 1e-66
Os03g0232900 Hly-III related proteins family protein 171 3e-43
Os03g0200000 158 3e-39
Os06g0643700 Hly-III related proteins family protein 149 1e-36
Os12g0511200 Hly-III related proteins family protein 134 4e-32
>Os06g0652200 Hly-III related proteins family protein
Length = 195
Score = 318 bits (815), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 162/182 (89%), Positives = 162/182 (89%)
Query: 1 MTCLAVSATAHLLACHSRRFSRLFWQLDYAGIAVMIVASFFPPVYYAFLGRAVAQVAYLS 60
MTCLAVSATAHLLACHSRRFSRLFWQLDYAGIAVMIVASFFPPVYYAFLGRAVAQVAYLS
Sbjct: 1 MTCLAVSATAHLLACHSRRFSRLFWQLDYAGIAVMIVASFFPPVYYAFLGRAVAQVAYLS 60
Query: 61 AITXXXXXXXXXXXXXXXXXXXXRHIRAGLFVSMGLSGVVPALHALWLNWGHPECYLALS 120
AIT RHIRAGLFVSMGLSGVVPALHALWLNWGHPECYLALS
Sbjct: 61 AITALGALVVAALLAPARSSPRLRHIRAGLFVSMGLSGVVPALHALWLNWGHPECYLALS 120
Query: 121 LELVMGLVYAAGAGFYVARVPERWRPGAFDCVGHSHQIFHVLVLAGALTHYAATAILIDW 180
LELVMGLVYAAGAGFYVARVPERWRPGAFDCVGHSHQIFHVLVLAGALTHYAATAILIDW
Sbjct: 121 LELVMGLVYAAGAGFYVARVPERWRPGAFDCVGHSHQIFHVLVLAGALTHYAATAILIDW 180
Query: 181 RE 182
RE
Sbjct: 181 RE 182
>Os02g0179500 Hly-III related proteins family protein
Length = 229
Score = 249 bits (635), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 126/182 (69%), Positives = 141/182 (77%)
Query: 1 MTCLAVSATAHLLACHSRRFSRLFWQLDYAGIAVMIVASFFPPVYYAFLGRAVAQVAYLS 60
MTCLA+SATAHLLACHSRR S +FWQLDYAGI+ MIVASF PPVYYAFL A+VAYLS
Sbjct: 38 MTCLAISATAHLLACHSRRASVVFWQLDYAGISAMIVASFVPPVYYAFLCHRPARVAYLS 97
Query: 61 AITXXXXXXXXXXXXXXXXXXXXRHIRAGLFVSMGLSGVVPALHALWLNWGHPECYLALS 120
AI+ R +RA LF++MGLSGVVPALHALWLNWGH CYLALS
Sbjct: 98 AISALGALVVGALLSPPCSSPRFRRLRAALFLAMGLSGVVPALHALWLNWGHAACYLALS 157
Query: 121 LELVMGLVYAAGAGFYVARVPERWRPGAFDCVGHSHQIFHVLVLAGALTHYAATAILIDW 180
LE+ MGL YAAGA FYV+RVPE+WRPG FD VGHSHQIFHVLVL GA+THY A +L++W
Sbjct: 158 LEVAMGLAYAAGAWFYVSRVPEKWRPGVFDVVGHSHQIFHVLVLVGAVTHYVAVDVLLNW 217
Query: 181 RE 182
RE
Sbjct: 218 RE 219
>Os03g0232900 Hly-III related proteins family protein
Length = 403
Score = 171 bits (433), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 88/182 (48%), Positives = 108/182 (59%)
Query: 1 MTCLAVSATAHLLACHSRRFSRLFWQLDYAGIAVMIVASFFPPVYYAFLGRAVAQVAYLS 60
M CL S+T HLL+CHSRR + + +LDYAGIA +I SF+PPVYY+F+ YLS
Sbjct: 218 MFCLLASSTCHLLSCHSRRLAYIMLRLDYAGIAALIATSFYPPVYYSFMCYPFFCNLYLS 277
Query: 61 AITXXXXXXXXXXXXXXXXXXXXRHIRAGLFVSMGLSGVVPALHALWLNWGHPECYLALS 120
IT R IRA LF MG SGV+P +H L L W PE +
Sbjct: 278 CITILGVATIAFSLLPVFQNPEFRTIRACLFFGMGASGVIPVIHKLILFWHQPEALHTTA 337
Query: 121 LELVMGLVYAAGAGFYVARVPERWRPGAFDCVGHSHQIFHVLVLAGALTHYAATAILIDW 180
E++MGL Y GA Y RVPERW PG FD GHSHQ+FHVLV+AGA THY + + + W
Sbjct: 338 YEVLMGLFYGIGALVYATRVPERWMPGKFDIAGHSHQLFHVLVVAGAYTHYHSGLVYLKW 397
Query: 181 RE 182
R+
Sbjct: 398 RD 399
>Os03g0200000
Length = 379
Score = 158 bits (399), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 84/182 (46%), Positives = 102/182 (56%)
Query: 1 MTCLAVSATAHLLACHSRRFSRLFWQLDYAGIAVMIVASFFPPVYYAFLGRAVAQVAYLS 60
M CL +S+ HLLACHS S + +LDYAGI +IV SF+P VYY FL + YL
Sbjct: 194 MFCLLMSSACHLLACHSEHASYVLLRLDYAGITGLIVTSFYPLVYYTFLCDPFFRTLYLG 253
Query: 61 AITXXXXXXXXXXXXXXXXXXXXRHIRAGLFVSMGLSGVVPALHALWLNWGHPECYLALS 120
IT R RAGLF MG+SG+VP +H + + PE L
Sbjct: 254 FITLFGAAAVAVSLMPVFEKPELRWARAGLFACMGMSGLVPIVHKMLVFGARPEAVLTTG 313
Query: 121 LELVMGLVYAAGAGFYVARVPERWRPGAFDCVGHSHQIFHVLVLAGALTHYAATAILIDW 180
E+VMG Y AG Y RVPERW PG FD GHSHQ+FHVLV+AGA HY A + + W
Sbjct: 314 YEMVMGAFYLAGVVVYATRVPERWMPGKFDLAGHSHQLFHVLVIAGAYAHYLAGVVYLSW 373
Query: 181 RE 182
R+
Sbjct: 374 RD 375
>Os06g0643700 Hly-III related proteins family protein
Length = 376
Score = 149 bits (375), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 97/182 (53%), Positives = 110/182 (60%)
Query: 1 MTCLAVSATAHLLACHSRRFSRLFWQLDYAGIAVMIVASFFPPVYYAFLGRAVAQVAYLS 60
M CL SA HLL+CHS R + +LDY GIAVMIV SFFPP+YY F QV YLS
Sbjct: 188 MFCLLSSAACHLLSCHSHRLNLFLIRLDYTGIAVMIVVSFFPPIYYIFQCEPRWQVVYLS 247
Query: 61 AITXXXXXXXXXXXXXXXXXXXXRHIRAGLFVSMGLSGVVPALHALWLNWGHPECYLALS 120
AIT R RA LFV+MGLSGVVPA HA+ +NW P + L+
Sbjct: 248 AITAAGVATVYALMSPRLSAARYRAHRALLFVAMGLSGVVPAAHAVAVNWHEPRRNVTLA 307
Query: 121 LELVMGLVYAAGAGFYVARVPERWRPGAFDCVGHSHQIFHVLVLAGALTHYAATAILIDW 180
E M Y AG FY+ RVPERWRPG FD GHSHQIFH LV+AGAL HYAA + I
Sbjct: 308 YEGAMAASYLAGTAFYLTRVPERWRPGMFDLCGHSHQIFHALVIAGALAHYAAAIVFIQA 367
Query: 181 RE 182
R+
Sbjct: 368 RD 369
>Os12g0511200 Hly-III related proteins family protein
Length = 418
Score = 134 bits (337), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 81/183 (44%), Positives = 99/183 (54%), Gaps = 1/183 (0%)
Query: 1 MTCLAVSATAHLLACHSRRFSRLFWQLDYAGIAVMIVASFFPPVYYAFLGRAVAQVAYLS 60
M CL S HLL CHS R + + +LDYAGIA +IVASF P V+Y+FL + AY +
Sbjct: 232 MACLLASTACHLLLCHSERANYVTLRLDYAGIAALIVASFLPIVHYSFLCDPWLRRAYTA 291
Query: 61 AITXXXXXXXXXXXXXXXXXXXXRHIRAGLFVSMGLSGVVPALHALWLNWGH-PECYLAL 119
AI R +RA LF + SGVVP H + L G E +
Sbjct: 292 AIACAGAATVTASLVPAFQSPRLRPLRAALFSGLAASGVVPVAHKMVLYGGTVREAATSA 351
Query: 120 SLELVMGLVYAAGAGFYVARVPERWRPGAFDCVGHSHQIFHVLVLAGALTHYAATAILID 179
E MG +YA G Y ARVPERW PG FD VGHSHQ+FH+LV+AGA HY +
Sbjct: 352 RCEAAMGALYALGVAVYAARVPERWFPGRFDLVGHSHQLFHLLVVAGAYAHYLGALEYLK 411
Query: 180 WRE 182
WR+
Sbjct: 412 WRD 414
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.332 0.141 0.471
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,542,022
Number of extensions: 187163
Number of successful extensions: 558
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 551
Number of HSP's successfully gapped: 6
Length of query: 195
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 100
Effective length of database: 12,075,471
Effective search space: 1207547100
Effective search space used: 1207547100
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 153 (63.5 bits)