Os02g0179500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hly-III related proteins family protein.
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Os02g0179500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hly-III related proteins family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 153.18 | 0.582 | 8.41 | 0.903 | 0.473 | 0.00123 | -1.13 | -10.7 | -0.516 | 21.9 | 29.9 | 637 | -- | -- |
| 164.75 | 0.598 | 8.48 | 0.014 | 0.538 | -1.04 | -0.826 | -- | -0.427 | 20.5 | 30.37 | 2128 | -- | -- |
| 157.51 | 0.585 | 8.42 | 0.88 | 0.49 | 0.0432 | -- | -10.5 | -0.539 | 21.8 | 30 | 627 | -- | -- |
| 162.73 | 0.594 | 8.52 | -0.115 | 0.614 | -0.939 | -- | -- | -0.528 | 20.6 | 30.4 | 2130 | -- | -- |
| 170.37 | 0.608 | 8.4 | 0.884 | -- | -0.17 | -- | -10.6 | -0.524 | -- | 30 | 637 | -- | -- |
| 187.07 | 0.641 | 8.55 | 0.08 | 0.729 | -- | -0.259 | -- | -0.676 | 20.8 | -- | -- | -- | -- |
| 187.27 | 0.641 | 8.55 | 0.0894 | 0.732 | -- | -- | -- | -0.675 | 20.7 | -- | -- | -- | -- |
| 182.25 | 0.629 | 8.51 | -0.151 | -- | -1.1 | -- | -- | -0.601 | -- | 29.76 | 2104 | -- | -- |
| 162.84 | 0.594 | 8.52 | -- | 0.617 | -0.918 | -- | -- | -0.55 | 20.6 | 30.06 | 2106 | -- | -- |
| 217.49 | 0.689 | 8.53 | 0.0875 | -- | -- | -- | -- | -0.681 | -- | -- | -- | -- | -- |
| 187.48 | 0.64 | 8.55 | -- | 0.732 | -- | -- | -- | -0.685 | 20.7 | -- | -- | -- | -- |
| 182.99 | 0.63 | 8.51 | -- | -- | -1.06 | -- | -- | -0.602 | -- | 29.79 | 2104 | -- | -- |
| 217.7 | 0.689 | 8.53 | -- | -- | -- | -- | -- | -0.691 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 148.04 | wind | 1.0 | 14400 | > th | dose independent | rect. | 1 | 5 |
| 2 | 148.35 | wind | 1.0 | 14400 | < th | dose independent | rect. | 1 | 5 |
| 4 | 148.92 | wind | 1.0 | 14400 | > th | dose independent | rect. | 2 | 2 |
| 10 | 149.92 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 2 | 1 |
| 12 | 150.33 | wind | 1.0 | 14400 | < th | dose independent | rect. | 2 | 1 |
| 15 | 150.86 | temperature | 30.0 | 720 | > th | dose independent | sin | 5 | NA |
| 18 | 150.99 | temperature | 30.0 | 720 | > th | dose independent | rect. | 8 | 7 |
| 71 | 152.02 | temperature | 25.0 | 720 | > th | dose dependent | sin | 7 | NA |
| 74 | 152.13 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 2 | 5 |
| 79 | 152.32 | temperature | 30.0 | 720 | < th | dose independent | sin | 7 | NA |
| 83 | 152.53 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 21 | 19 |
| 119 | 153.19 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 12 | 1 |
| 125 | 153.32 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 23 | 12 |
| 145 | 153.47 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 14 | 4 |
| 156 | 153.69 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 15 | 6 |
| 159 | 153.77 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 12 | 2 |
| 164 | 153.83 | temperature | 30.0 | 720 | < th | dose independent | rect. | 23 | 16 |
| 180 | 154.10 | temperature | 30.0 | 720 | < th | dose independent | rect. | 19 | 20 |
| 182 | 154.13 | temperature | 30.0 | 720 | < th | dose independent | rect. | 21 | 18 |
| 194 | 154.25 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 9 | 1 |
| 195 | 154.26 | wind | 5.0 | 14400 | < th | dose independent | rect. | 7 | 2 |
| 201 | 154.32 | temperature | 30.0 | 720 | < th | dose independent | rect. | 7 | 18 |
| 228 | 154.48 | wind | 5.0 | 14400 | > th | dose independent | rect. | 7 | 2 |
| 229 | 154.52 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 16 | 2 |
| 230 | 154.52 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 16 | 2 |
| 235 | 154.61 | temperature | 30.0 | 720 | < th | dose independent | rect. | 19 | 22 |
| 236 | 154.62 | temperature | 30.0 | 720 | < th | dose independent | rect. | 6 | 23 |
| 248 | 154.77 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 16 | 2 |
| 259 | 154.90 | temperature | 30.0 | 720 | < th | dose independent | rect. | 3 | 23 |
| 261 | 154.91 | temperature | 30.0 | 720 | < th | dose independent | no | NA | NA |
| 273 | 155.01 | temperature | 30.0 | 720 | > th | dose independent | no | NA | NA |
| 369 | 155.03 | temperature | 30.0 | 720 | < th | dose independent | sin | 21 | NA |
| 434 | 155.50 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 3 | 4 |
| 435 | 155.51 | temperature | 30.0 | 720 | < th | dose independent | rect. | 12 | 23 |
| 441 | 155.57 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 24 | 8 |
| 456 | 155.70 | temperature | 30.0 | 720 | > th | dose independent | rect. | 13 | 23 |
| 457 | 155.71 | temperature | 30.0 | 720 | > th | dose dependent | rect. | 8 | 7 |
| 498 | 155.81 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 19 | 6 |
| 500 | 155.82 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 20 | 4 |
| 526 | 155.92 | temperature | 25.0 | 720 | > th | dose dependent | no | NA | NA |
| 536 | 155.95 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 5 | 23 |
| 562 | 156.02 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 15 | 23 |
| 633 | 156.33 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 20 | 5 |
| 647 | 156.38 | temperature | 30.0 | 720 | > th | dose independent | rect. | 11 | 23 |
| 648 | 156.38 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 12 | 1 |
| 671 | 156.47 | temperature | 25.0 | 270 | > th | dose dependent | sin | 12 | NA |
| 687 | 156.54 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 9 | 1 |
| 712 | 156.64 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 11 | 23 |
| 722 | 156.68 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 21 | 2 |
| 734 | 156.72 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 20 | 23 |
| 740 | 156.74 | temperature | 30.0 | 720 | < th | dose independent | rect. | 19 | 16 |
| 746 | 156.76 | wind | 5.0 | 14400 | > th | dose dependent | rect. | 7 | 2 |
| 750 | 156.79 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 14 | 10 |
| 751 | 156.79 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 14 | 10 |
| 753 | 156.79 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 14 | 10 |
| 769 | 156.85 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 16 | 8 |
| 772 | 156.85 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 16 | 8 |
| 842 | 156.95 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 14 | 13 |
| 845 | 156.95 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 14 | 13 |
| 854 | 156.98 | precipitation | 0.1 | 14400 | < th | dose independent | sin | 17 | NA |
| 858 | 156.98 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 14 | 13 |
| 861 | 156.98 | precipitation | 0.1 | 14400 | < th | dose dependent | sin | 17 | NA |
| 862 | 156.99 | precipitation | 0.1 | 14400 | > th | dose independent | sin | 17 | NA |
| 885 | 157.05 | wind | 1.0 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 887 | 157.05 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 11 | 17 |
| 890 | 157.06 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 6 | 17 |
| 891 | 157.06 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 6 | 17 |
| 907 | 157.11 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 11 | 13 |
| 911 | 157.11 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 14 | 14 |
| 915 | 157.12 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 11 | 12 |
| 918 | 157.12 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 11 | 12 |
| 939 | 157.14 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 8 | 16 |
| 948 | 157.15 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 20 | 22 |
| 956 | 157.16 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 20 | 22 |
| 960 | 157.16 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 20 | 22 |
| 992 | 157.20 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 11 | 16 |
| 997 | 157.20 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 11 | 16 |