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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0511200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hly-III related proteins family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.95 (0.0634) R2 : 0.67
β1 : -6.18 (0.249) R2dD : 0.585 R2D : 0.26
β2 : 0.705 (0.148) R2dC : 0.0166 R2C : 0.00562
β3 : -1.4 (0.156) R2dE : 0.0843 R2E : -0.00828
β4 : -3.21 (0.589) R2dD*C : 0.0218 R2D*C : 0.0305
β5 : 9.68 (0.632) R2dD*E : 0.239 R2D*E : -0.223
γ1 : -2.4 (0.149) R2dN8 : 0.335 R2N8 : -0.0721
σ : 1.14
deviance : 589.18
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_____
C
peak time of C : 9.61
E
wheather : radiation
threshold : 9.881
memory length : 1433
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 16
open length of G : 0.881

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
589.18 1.14 3.95 -6.18 0.705 -1.4 -3.21 9.68 -2.4 9.61 9.881 1433 16 0.881
895.64 1.39 4.12 -5.01 0.656 -1.12 -3.3 -- -1.94 9.89 13.48 1792 15.6 0.984
626.44 1.17 3.95 -6.35 0.745 -1.41 -- 9.86 -2.42 8.9 9.889 1433 16 0.878
901.71 1.4 4.15 -4.66 0.7 -2.4 -- -- -1.59 9.6 29.97 4316 16 1.47
657.53 1.19 3.96 -6.36 -- -1.45 -- 10.1 -2.42 -- 9.9 1435 16 0.868
937.05 1.44 4.01 -4.88 0.833 -- -3.78 -- -1.51 10.5 -- -- -- --
994.52 1.48 4.02 -5.04 0.867 -- -- -- -1.53 9.94 -- -- -- --
903.88 1.4 4.15 -3.16 -- -4 -- -- -1.19 -- 29.04 4319 16 1.53
1115.32 1.56 4.1 -- 0.967 -2.36 -- -- -0.717 9.98 29.52 35996 15.9 1.26
1039.7 1.51 4.04 -5.05 -- -- -- -- -1.53 -- -- -- -- --
1663.3 1.91 3.89 -- 0.89 -- -- -- -0.964 10.4 -- -- -- --
1092.85 1.54 4.13 -- -- -4.41 -- -- -1.22 -- 29.49 12958 16.1 1.8
1711.7 1.93 3.91 -- -- -- -- -- -0.965 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 585.39 radiation 40 14400 < th dose independent rect. 6 2
4 590.99 radiation 40 14400 < th dose independent rect. 17 15
7 595.16 radiation 40 14400 < th dose independent rect. 2 6
8 595.29 atmosphere 1015 43200 > th dose independent rect. 19 1
13 598.01 radiation 40 14400 < th dose independent rect. 22 10
14 598.62 radiation 10 1440 < th dose independent rect. 16 1
18 605.86 radiation 10 1440 < th dose independent rect. 15 15
19 612.08 radiation 10 1440 < th dose independent rect. 15 8
21 612.24 radiation 10 1440 < th dose independent rect. 15 6
24 612.65 radiation 10 1440 < th dose independent rect. 15 4
32 616.76 atmosphere 1015 43200 > th dose dependent rect. 17 4
40 618.91 atmosphere 1015 43200 > th dose dependent rect. 17 1
64 622.45 atmosphere 1015 43200 < th dose independent rect. 17 3
72 625.97 radiation 1 4320 < th dose independent rect. 8 1
73 625.97 radiation 1 4320 < th dose dependent rect. 8 1
77 626.87 radiation 30 1440 < th dose independent rect. 16 7
80 627.28 radiation 30 1440 < th dose independent rect. 16 5
97 630.73 radiation 30 1440 < th dose independent rect. 16 3
101 632.21 radiation 10 1440 < th dose independent sin 14 NA
103 633.42 radiation 30 1440 < th dose independent rect. 16 11
107 634.32 atmosphere 1015 43200 > th dose independent rect. 14 6
116 637.60 radiation 30 1440 < th dose independent rect. 16 15
122 640.13 radiation 40 1440 > th dose dependent rect. 13 22
126 643.45 radiation 1 1440 > th dose dependent rect. 11 1
131 646.19 radiation 1 720 > th dose dependent rect. 17 13
138 647.17 temperature 15 43200 < th dose dependent rect. 1 15
140 647.24 temperature 15 43200 < th dose dependent rect. 2 6
141 647.30 radiation 1 4320 > th dose independent rect. 8 1
145 647.49 temperature 15 43200 < th dose dependent rect. 1 8
157 648.01 temperature 15 43200 < th dose dependent rect. 4 3
158 648.07 temperature 15 43200 < th dose dependent rect. 5 1
196 649.23 temperature 15 43200 < th dose dependent sin 5 NA
259 651.35 temperature 15 43200 < th dose dependent rect. 2 1
272 651.81 temperature 15 43200 < th dose dependent rect. 12 19
339 652.83 temperature 15 43200 < th dose dependent rect. 18 14
345 652.85 temperature 15 43200 < th dose dependent no NA NA
419 653.83 radiation 40 1440 > th dose dependent no NA NA
420 653.83 radiation 40 1440 > th dose dependent rect. 8 8
562 654.07 radiation 40 1440 > th dose dependent rect. 10 23
570 654.35 radiation 40 1440 > th dose dependent sin 2 NA
652 656.18 radiation 40 1440 < th dose dependent rect. 11 1
660 656.59 radiation 40 1440 < th dose independent rect. 10 23
723 658.85 temperature 15 43200 < th dose independent rect. 24 2
733 659.34 radiation 1 14400 < th dose independent rect. 10 2
734 659.34 radiation 1 14400 < th dose dependent rect. 10 2
736 659.43 temperature 15 43200 > th dose independent rect. 1 1
740 659.87 radiation 1 14400 > th dose independent rect. 10 2
748 660.49 temperature 15 43200 > th dose independent rect. 3 1
754 660.69 temperature 15 43200 < th dose independent rect. 24 4
761 661.02 radiation 40 1440 > th dose dependent sin 12 NA
789 661.68 temperature 15 43200 < th dose independent rect. 24 8
794 662.00 temperature 15 43200 > th dose independent rect. 24 4
813 662.96 radiation 30 43200 > th dose independent rect. 7 1
833 663.04 temperature 15 43200 < th dose independent rect. 24 15
839 663.21 temperature 15 43200 < th dose independent rect. 5 2
842 663.34 radiation 1 1440 > th dose dependent rect. 15 16
844 663.35 temperature 15 43200 < th dose dependent rect. 10 1
873 664.21 temperature 15 43200 < th dose independent rect. 19 13
878 664.28 temperature 15 43200 > th dose independent rect. 13 15
886 664.37 temperature 15 43200 < th dose independent rect. 13 18
904 664.64 temperature 15 43200 > th dose independent rect. 22 6
906 664.65 temperature 15 43200 < th dose independent rect. 13 15
911 664.73 temperature 15 43200 < th dose independent rect. 19 9
923 664.87 temperature 15 43200 < th dose independent sin 11 NA
925 664.88 temperature 15 43200 > th dose independent rect. 17 11
961 665.19 radiation 40 1440 < th dose independent rect. 11 1