Os03g0232900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hly-III related proteins family protein.
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Os03g0232900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hly-III related proteins family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 77.88 | 0.415 | 10.3 | -1.47 | 1.08 | -1.06 | 0.381 | 2.36 | -0.775 | 6.98 | 9.787 | 1475 | -- | -- |
| 87.03 | 0.434 | 10.3 | -1.25 | 1.09 | -1.02 | 0.18 | -- | -0.726 | 7.07 | 9.901 | 1482 | -- | -- |
| 77.85 | 0.411 | 10.3 | -1.47 | 1.09 | -1.08 | -- | 2.44 | -0.772 | 6.81 | 9.906 | 1501 | -- | -- |
| 86.97 | 0.434 | 10.3 | -1.24 | 1.09 | -1.01 | -- | -- | -0.703 | 7.23 | 10 | 1470 | -- | -- |
| 138.17 | 0.547 | 10.4 | -1.45 | -- | -1.19 | -- | 2.53 | -0.775 | -- | 9.398 | 1501 | -- | -- |
| 110.65 | 0.493 | 10.3 | -1.24 | 1.13 | -- | 0.0169 | -- | -0.527 | 7.42 | -- | -- | -- | -- |
| 110.65 | 0.493 | 10.3 | -1.24 | 1.13 | -- | -- | -- | -0.527 | 7.42 | -- | -- | -- | -- |
| 148.18 | 0.567 | 10.4 | -1.23 | -- | -1.13 | -- | -- | -0.737 | -- | 9.364 | 1495 | -- | -- |
| 127 | 0.525 | 10.3 | -- | 1.07 | -1.03 | -- | -- | -0.585 | 7.35 | 10 | 1465 | -- | -- |
| 178.8 | 0.625 | 10.3 | -1.22 | -- | -- | -- | -- | -0.509 | -- | -- | -- | -- | -- |
| 151.01 | 0.575 | 10.3 | -- | 1.12 | -- | -- | -- | -0.389 | 7.5 | -- | -- | -- | -- |
| 186.69 | 0.636 | 10.3 | -- | -- | -1.17 | -- | -- | -0.589 | -- | 10 | 1501 | -- | -- |
| 218.03 | 0.689 | 10.3 | -- | -- | -- | -- | -- | -0.373 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 78.96 | radiation | 10 | 1440 | < th | dose dependent | rect. | 10 | 23 |
| 4 | 79.04 | radiation | 10 | 1440 | < th | dose dependent | rect. | 15 | 23 |
| 7 | 79.17 | radiation | 10 | 1440 | < th | dose dependent | rect. | 6 | 22 |
| 17 | 79.21 | radiation | 10 | 1440 | < th | dose dependent | rect. | 24 | 20 |
| 18 | 79.21 | radiation | 10 | 1440 | < th | dose dependent | rect. | 22 | 22 |
| 30 | 79.23 | radiation | 10 | 1440 | < th | dose dependent | no | NA | NA |
| 31 | 79.23 | radiation | 10 | 1440 | < th | dose dependent | rect. | 6 | 14 |
| 32 | 79.23 | radiation | 10 | 1440 | < th | dose dependent | rect. | 2 | 23 |
| 40 | 79.24 | radiation | 10 | 1440 | < th | dose dependent | rect. | 6 | 17 |
| 88 | 79.37 | radiation | 20 | 1440 | < th | dose independent | rect. | 13 | 22 |
| 99 | 79.79 | radiation | 10 | 1440 | < th | dose dependent | sin | 0 | NA |
| 104 | 79.84 | radiation | 20 | 1440 | < th | dose independent | rect. | 15 | 23 |
| 109 | 79.88 | radiation | 20 | 1440 | < th | dose independent | rect. | 9 | 23 |
| 110 | 79.88 | radiation | 1 | 1440 | > th | dose dependent | rect. | 10 | 23 |
| 169 | 79.95 | radiation | 30 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 233 | 80.06 | radiation | 20 | 1440 | < th | dose independent | rect. | 7 | 21 |
| 239 | 80.08 | radiation | 20 | 1440 | < th | dose independent | rect. | 7 | 18 |
| 242 | 80.09 | radiation | 20 | 1440 | < th | dose independent | rect. | 7 | 11 |
| 243 | 80.09 | radiation | 20 | 1440 | < th | dose independent | rect. | 7 | 13 |
| 276 | 80.14 | radiation | 20 | 1440 | < th | dose independent | rect. | 24 | 18 |
| 277 | 80.14 | radiation | 20 | 1440 | < th | dose independent | rect. | 22 | 20 |
| 278 | 80.14 | radiation | 20 | 1440 | < th | dose independent | rect. | 24 | 20 |
| 281 | 80.14 | radiation | 20 | 1440 | < th | dose independent | rect. | 22 | 22 |
| 293 | 80.15 | radiation | 20 | 1440 | < th | dose independent | no | NA | NA |
| 332 | 80.16 | radiation | 20 | 1440 | < th | dose independent | rect. | 2 | 23 |
| 386 | 80.18 | radiation | 10 | 1440 | < th | dose independent | rect. | 15 | 16 |
| 422 | 80.23 | radiation | 1 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 424 | 80.24 | radiation | 20 | 1440 | < th | dose independent | rect. | 13 | 19 |
| 473 | 80.37 | radiation | 1 | 1440 | > th | dose dependent | rect. | 15 | 23 |
| 500 | 80.47 | radiation | 10 | 1440 | < th | dose independent | sin | 14 | NA |
| 501 | 80.47 | radiation | 1 | 1440 | > th | dose dependent | no | NA | NA |
| 503 | 80.47 | radiation | 1 | 1440 | > th | dose dependent | rect. | 5 | 14 |
| 597 | 80.51 | radiation | 20 | 1440 | < th | dose independent | sin | 22 | NA |
| 664 | 80.59 | radiation | 30 | 1440 | < th | dose dependent | sin | 0 | NA |
| 665 | 80.60 | radiation | 10 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 742 | 80.75 | radiation | 1 | 1440 | > th | dose dependent | sin | 23 | NA |
| 826 | 80.99 | radiation | 20 | 1440 | < th | dose dependent | sin | 13 | NA |
| 863 | 81.14 | radiation | 1 | 1440 | > th | dose dependent | sin | 13 | NA |
| 876 | 81.17 | radiation | 10 | 1440 | < th | dose independent | rect. | 15 | 13 |
| 894 | 81.22 | radiation | 1 | 1440 | > th | dose dependent | rect. | 10 | 9 |
| 948 | 81.28 | radiation | 10 | 1440 | < th | dose independent | rect. | 15 | 4 |
| 987 | 81.36 | radiation | 1 | 1440 | > th | dose dependent | rect. | 13 | 20 |