BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0232900 Os03g0232900|AK072709
(403 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G37680.1 | chr4:17701231-17702568 FORWARD LENGTH=386 554 e-158
AT4G38320.1 | chr4:17949078-17950383 FORWARD LENGTH=375 519 e-148
AT4G30850.1 | chr4:15020540-15022278 REVERSE LENGTH=359 247 6e-66
AT5G20270.1 | chr5:6841025-6842656 REVERSE LENGTH=333 216 2e-56
AT2G24150.1 | chr2:10265632-10267345 REVERSE LENGTH=345 199 1e-51
AT2G40710.1 | chr2:16981087-16981368 REVERSE LENGTH=94 171 7e-43
AT4G38290.1 | chr4:17942871-17943909 FORWARD LENGTH=109 143 2e-34
>AT4G37680.1 | chr4:17701231-17702568 FORWARD LENGTH=386
Length = 385
Score = 554 bits (1427), Expect = e-158, Method: Compositional matrix adjust.
Identities = 263/367 (71%), Positives = 304/367 (82%), Gaps = 26/367 (7%)
Query: 38 ALPGYMRDNEYILRHYRCEWPLPQVLLSAFSIHNETLNVWTHLIGFFIFLVLTIYTATQV 97
+LP Y+RDNEYI+ HYR EWP+ Q+LLS F+IHNETLNVWTHLIGFF+FL LTIYTAT+V
Sbjct: 44 SLPAYLRDNEYIIGHYRSEWPIKQILLSIFTIHNETLNVWTHLIGFFLFLALTIYTATKV 103
Query: 98 PNVVDLQSLQH-LPDVLRNADLHKIQTELVACLPSLPHLSDLQKLKDELKSSWNSIEVLP 156
P+VVDL SLQH LPD+LR DLHK+ +EL+A LPS P
Sbjct: 104 PSVVDLHSLQHRLPDLLRKTDLHKLHSELMARLPSSP----------------------- 140
Query: 157 SLSRWHLLELLSSCLPHRFTHSNETSLSVLQSMKEDIANMIAPQLIRPIPRWPFYAFLGG 216
S WH+++LL +CLP RF+H N T + VL S++ED+AN+IAP + RPI RWPFYAFLGG
Sbjct: 141 --SSWHVMDLLYNCLPERFSHGNYTDMCVLHSVREDLANLIAPLIFRPITRWPFYAFLGG 198
Query: 217 AMFCLLASSTCHLLSCHSRRLAYIMLRLDYAGIAALIATSFYPPVYYSFMCYPFFCNLYL 276
AMFCLLASSTCHLLSCHS R++YIMLRLDYAGIAALIATSFYPPVYYSFMC PFFCNLYL
Sbjct: 199 AMFCLLASSTCHLLSCHSERVSYIMLRLDYAGIAALIATSFYPPVYYSFMCDPFFCNLYL 258
Query: 277 SCITILGVATIAFSLLPVFQNPEFRTIRACLFFGMGASGVIPVIHKLILFWHQPEALHTT 336
ITILG+AT+ SLLPVFQ+PEFR +RA LFFGMG SG+ P++HKLI+FW QPEALHTT
Sbjct: 259 GFITILGIATVLVSLLPVFQSPEFRVVRASLFFGMGFSGLAPILHKLIIFWDQPEALHTT 318
Query: 337 AYEVLMGLFYGIGALVYATRVPERWMPGKFDIAGHSHQLFHVLVVAGAYTHYHSGLVYLK 396
YE+LMGL YG+GALVYATR+PERWMPGKFDIAGHSHQLFHVLVVAGA+THY +GLVYLK
Sbjct: 319 GYEILMGLLYGLGALVYATRIPERWMPGKFDIAGHSHQLFHVLVVAGAFTHYRAGLVYLK 378
Query: 397 WRDVQGC 403
WRD++GC
Sbjct: 379 WRDIEGC 385
>AT4G38320.1 | chr4:17949078-17950383 FORWARD LENGTH=375
Length = 374
Score = 519 bits (1337), Expect = e-148, Method: Compositional matrix adjust.
Identities = 249/356 (69%), Positives = 290/356 (81%), Gaps = 26/356 (7%)
Query: 38 ALPGYMRDNEYILRHYRCEWPLPQVLLSAFSIHNETLNVWTHLIGFFIFLVLTIYTATQV 97
+LP Y+RDNEYI+ HYR EWP+ Q+LLS F+IHNETLNVWTHLIGFF+FL LTIYTAT+V
Sbjct: 44 SLPAYLRDNEYIIGHYRSEWPIKQILLSIFTIHNETLNVWTHLIGFFLFLALTIYTATKV 103
Query: 98 PNVVDLQSLQH-LPDVLRNADLHKIQTELVACLPSLPHLSDLQKLKDELKSSWNSIEVLP 156
P+VVDL SLQH LPD+LR DLHK+ +EL++ LPS P
Sbjct: 104 PSVVDLHSLQHRLPDLLRKTDLHKLHSELMSRLPSSP----------------------- 140
Query: 157 SLSRWHLLELLSSCLPHRFTHSNETSLSVLQSMKEDIANMIAPQLIRPIPRWPFYAFLGG 216
S WH+++LL +CLP RF+H N T + VL S++ED+AN+IAP + RPI RWPFYAFLGG
Sbjct: 141 --SSWHVMDLLYNCLPERFSHGNYTDMCVLHSVREDLANLIAPLIFRPITRWPFYAFLGG 198
Query: 217 AMFCLLASSTCHLLSCHSRRLAYIMLRLDYAGIAALIATSFYPPVYYSFMCYPFFCNLYL 276
A+FCLLASSTCHLLSCHS R++YIMLRLDYAGIAALIATSFYPPVYYSFMC PFFCNLYL
Sbjct: 199 AIFCLLASSTCHLLSCHSERVSYIMLRLDYAGIAALIATSFYPPVYYSFMCDPFFCNLYL 258
Query: 277 SCITILGVATIAFSLLPVFQNPEFRTIRACLFFGMGASGVIPVIHKLILFWHQPEALHTT 336
ITILG+AT+ SLLPVFQ+ EFR +RA LFFGMG SG+ P++HKLI+FW QPEALH T
Sbjct: 259 GFITILGIATVLVSLLPVFQSLEFRVVRASLFFGMGFSGLAPILHKLIIFWDQPEALHMT 318
Query: 337 AYEVLMGLFYGIGALVYATRVPERWMPGKFDIAGHSHQLFHVLVVAGAYTHYHSGL 392
YE+LMGL YG+GA+VYATR+PERWMPGKFDIAGHSHQLFHVLVVAGA THY +GL
Sbjct: 319 GYEILMGLLYGLGAVVYATRIPERWMPGKFDIAGHSHQLFHVLVVAGALTHYRAGL 374
>AT4G30850.1 | chr4:15020540-15022278 REVERSE LENGTH=359
Length = 358
Score = 247 bits (631), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 143/360 (39%), Positives = 186/360 (51%), Gaps = 46/360 (12%)
Query: 39 LPGYMRDNEYILRHYRCEWPLPQVLLSAFSIHNETLNVWTHLIGFFIFLVLTIYTATQVP 98
LP Y++DNE+I HYRCEW + + LSAFS HNETLN+WTHL GF IF + + ++ +
Sbjct: 37 LPRYLKDNEFIHNHYRCEWSIKETFLSAFSWHNETLNIWTHLCGFAIFTWMMVVSSMETT 96
Query: 99 NVVDLQSLQHLPDVLRNADLHKIQTELVACLPSLPHLSDLQKLKDELKSSWNSIEVLPSL 158
+ L +L A + PS+ D+ D+
Sbjct: 97 EL----GLAGFVSLLSGATIR-------WPWPSMAMSKDVYFSSDQ-------------- 131
Query: 159 SRWHLLELLSSCLPHRFTHSNETSLSVLQSMKEDIANMIAPQLIRPIPRWPFYAFLGGAM 218
L H N T L + + D+ IP+WP+ FL GAM
Sbjct: 132 -----------TLHHDL---NVTHTRSLLNSQGDVN-------YEAIPKWPWLVFLTGAM 170
Query: 219 FCLLASSTCHLLSCHSRRLAYIMLRLDYAGIAALIATSFYPPVYYSFMCYPFFCNLYLSC 278
CL+ SS HL +CHSRR RLDYAGI+ +I SF+ P+YY+F C+ ++ YLS
Sbjct: 171 GCLICSSMSHLFACHSRRFNLFFWRLDYAGISLMIVCSFFAPIYYAFSCHTYWRLFYLSS 230
Query: 279 ITILGVATIAFSLLPVFQNPEFRTIRACLFFGMGASGVIPVIHKLILFWHQPEALHTTAY 338
I+ILG+ I L P P FR+ RA LF MG SGVIP H L L P L Y
Sbjct: 231 ISILGLLAIFTLLSPSLSAPRFRSFRAALFLTMGFSGVIPATHVLYLHKDHPNVLIALVY 290
Query: 339 EVLMGLFYGIGALVYATRVPERWMPGKFDIAGHSHQLFHVLVVAGAYTHYHSGLVYLKWR 398
E+ M + Y GA Y TR+PERW PG FDIAGHSHQ+FHV VV GA H + L+ + +R
Sbjct: 291 ELAMAVLYATGAAFYVTRIPERWKPGAFDIAGHSHQIFHVFVVLGALAHSVASLLIMDFR 350
>AT5G20270.1 | chr5:6841025-6842656 REVERSE LENGTH=333
Length = 332
Score = 216 bits (550), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 101/199 (50%), Positives = 132/199 (66%)
Query: 205 IPRWPFYAFLGGAMFCLLASSTCHLLSCHSRRLAYIMLRLDYAGIAALIATSFYPPVYYS 264
+ RWPF+ FLGG+MFCLLASS CHL CHS+ L +LR+DYAGI A+I TSF+PP++Y
Sbjct: 134 VTRWPFFVFLGGSMFCLLASSICHLFCCHSKELNVFLLRIDYAGITAMIITSFFPPIFYI 193
Query: 265 FMCYPFFCNLYLSCITILGVATIAFSLLPVFQNPEFRTIRACLFFGMGASGVIPVIHKLI 324
F C P + +YL+ IT +G+ TI P P++R RA LF MG G++P H L+
Sbjct: 194 FQCTPRWYFIYLAGITSMGIFTIITLFTPSLSAPKYRAFRALLFASMGLFGIVPAAHALV 253
Query: 325 LFWHQPEALHTTAYEVLMGLFYGIGALVYATRVPERWMPGKFDIAGHSHQLFHVLVVAGA 384
+ W P+ T YE+LM +FY +G Y RVPER PG FD GHSHQ+FHV V+ GA
Sbjct: 254 VNWGNPQRNVTLVYELLMAVFYLVGTGFYVGRVPERLKPGWFDRVGHSHQIFHVFVLLGA 313
Query: 385 YTHYHSGLVYLKWRDVQGC 403
+HY + L++L WRD GC
Sbjct: 314 LSHYAAALLFLDWRDHVGC 332
>AT2G24150.1 | chr2:10265632-10267345 REVERSE LENGTH=345
Length = 344
Score = 199 bits (507), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 96/185 (51%), Positives = 117/185 (63%)
Query: 203 RPIPRWPFYAFLGGAMFCLLASSTCHLLSCHSRRLAYIMLRLDYAGIAALIATSFYPPVY 262
IP+WP+ +L GAM CL+ SS HLL+CHS+R RLDYAGI+ +I SF+ P+Y
Sbjct: 141 EAIPKWPWLVYLVGAMGCLICSSVSHLLACHSKRFNVFFWRLDYAGISLMIVASFFAPIY 200
Query: 263 YSFMCYPFFCNLYLSCITILGVATIAFSLLPVFQNPEFRTIRACLFFGMGASGVIPVIHK 322
Y+F C+P F LYLS I+ILG+ I L P P FR RA LF MG+S VIP H
Sbjct: 201 YAFSCHPNFRLLYLSSISILGLLAIITLLSPALSTPRFRPFRANLFLAMGSSAVIPATHV 260
Query: 323 LILFWHQPEALHTTAYEVLMGLFYGIGALVYATRVPERWMPGKFDIAGHSHQLFHVLVVA 382
L L+W P YE+ L Y +GA Y +RVPERW PG FD+AGHSHQ+FHV VV
Sbjct: 261 LCLYWDHPNVFIALGYEIATALSYFVGATFYVSRVPERWKPGAFDMAGHSHQIFHVFVVM 320
Query: 383 GAYTH 387
GA H
Sbjct: 321 GALAH 325
>AT2G40710.1 | chr2:16981087-16981368 REVERSE LENGTH=94
Length = 93
Score = 171 bits (433), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 76/93 (81%), Positives = 87/93 (93%)
Query: 311 MGASGVIPVIHKLILFWHQPEALHTTAYEVLMGLFYGIGALVYATRVPERWMPGKFDIAG 370
MG SG+ P++HKLI+FW QPEALHTT YE+LMGL YG+GALVYATR+PERWMPGKFDIAG
Sbjct: 1 MGFSGLAPILHKLIIFWDQPEALHTTCYEILMGLLYGLGALVYATRIPERWMPGKFDIAG 60
Query: 371 HSHQLFHVLVVAGAYTHYHSGLVYLKWRDVQGC 403
HSHQLFHVLVVAGA+THY +GLVYLKWRD++GC
Sbjct: 61 HSHQLFHVLVVAGAFTHYRAGLVYLKWRDIEGC 93
>AT4G38290.1 | chr4:17942871-17943909 FORWARD LENGTH=109
Length = 108
Score = 143 bits (360), Expect = 2e-34, Method: Composition-based stats.
Identities = 59/73 (80%), Positives = 68/73 (93%)
Query: 331 EALHTTAYEVLMGLFYGIGALVYATRVPERWMPGKFDIAGHSHQLFHVLVVAGAYTHYHS 390
E ++ T YE+LMGL YG+GALVYATR+PERWMPGKFDIAGHSHQLFHVLVVAGA+THY +
Sbjct: 36 EDIYLTGYEILMGLLYGLGALVYATRIPERWMPGKFDIAGHSHQLFHVLVVAGAFTHYRA 95
Query: 391 GLVYLKWRDVQGC 403
GLVYLKWRD++GC
Sbjct: 96 GLVYLKWRDIEGC 108
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.329 0.141 0.463
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,328,849
Number of extensions: 348163
Number of successful extensions: 1038
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 1033
Number of HSP's successfully gapped: 10
Length of query: 403
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 302
Effective length of database: 8,337,553
Effective search space: 2517941006
Effective search space used: 2517941006
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 113 (48.1 bits)