BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0232900 Os03g0232900|AK072709
(403 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0232900 Hly-III related proteins family protein 755 0.0
Os12g0511200 Hly-III related proteins family protein 300 1e-81
Os03g0200000 284 8e-77
Os02g0179500 Hly-III related proteins family protein 199 2e-51
Os06g0643700 Hly-III related proteins family protein 193 2e-49
Os06g0652200 Hly-III related proteins family protein 189 4e-48
>Os03g0232900 Hly-III related proteins family protein
Length = 403
Score = 755 bits (1950), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 366/366 (100%), Positives = 366/366 (100%)
Query: 38 ALPGYMRDNEYILRHYRCEWPLPQVLLSAFSIHNETLNVWTHLIGFFIFLVLTIYTATQV 97
ALPGYMRDNEYILRHYRCEWPLPQVLLSAFSIHNETLNVWTHLIGFFIFLVLTIYTATQV
Sbjct: 38 ALPGYMRDNEYILRHYRCEWPLPQVLLSAFSIHNETLNVWTHLIGFFIFLVLTIYTATQV 97
Query: 98 PNVVDLQSLQHLPDVLRNADLHKIQTELVACLPSLPHLSDLQKLKDELKSSWNSIEVLPS 157
PNVVDLQSLQHLPDVLRNADLHKIQTELVACLPSLPHLSDLQKLKDELKSSWNSIEVLPS
Sbjct: 98 PNVVDLQSLQHLPDVLRNADLHKIQTELVACLPSLPHLSDLQKLKDELKSSWNSIEVLPS 157
Query: 158 LSRWHLLELLSSCLPHRFTHSNETSLSVLQSMKEDIANMIAPQLIRPIPRWPFYAFLGGA 217
LSRWHLLELLSSCLPHRFTHSNETSLSVLQSMKEDIANMIAPQLIRPIPRWPFYAFLGGA
Sbjct: 158 LSRWHLLELLSSCLPHRFTHSNETSLSVLQSMKEDIANMIAPQLIRPIPRWPFYAFLGGA 217
Query: 218 MFCLLASSTCHLLSCHSRRLAYIMLRLDYAGIAALIATSFYPPVYYSFMCYPFFCNLYLS 277
MFCLLASSTCHLLSCHSRRLAYIMLRLDYAGIAALIATSFYPPVYYSFMCYPFFCNLYLS
Sbjct: 218 MFCLLASSTCHLLSCHSRRLAYIMLRLDYAGIAALIATSFYPPVYYSFMCYPFFCNLYLS 277
Query: 278 CITILGVATIAFSLLPVFQNPEFRTIRACLFFGMGASGVIPVIHKLILFWHQPEALHTTA 337
CITILGVATIAFSLLPVFQNPEFRTIRACLFFGMGASGVIPVIHKLILFWHQPEALHTTA
Sbjct: 278 CITILGVATIAFSLLPVFQNPEFRTIRACLFFGMGASGVIPVIHKLILFWHQPEALHTTA 337
Query: 338 YEVLMGLFYGIGALVYATRVPERWMPGKFDIAGHSHQLFHVLVVAGAYTHYHSGLVYLKW 397
YEVLMGLFYGIGALVYATRVPERWMPGKFDIAGHSHQLFHVLVVAGAYTHYHSGLVYLKW
Sbjct: 338 YEVLMGLFYGIGALVYATRVPERWMPGKFDIAGHSHQLFHVLVVAGAYTHYHSGLVYLKW 397
Query: 398 RDVQGC 403
RDVQGC
Sbjct: 398 RDVQGC 403
>Os12g0511200 Hly-III related proteins family protein
Length = 418
Score = 300 bits (768), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 171/376 (45%), Positives = 225/376 (59%), Gaps = 18/376 (4%)
Query: 39 LPGYMRDNEYILRHYRCEWPLPQVLLSAFSIHNETLNVWTHLIGFFIFLVLTIYTATQVP 98
LP +++DNE+I +YRCEWP+ + +LS FSIHNETLNVWTHLIGF +FL L I+TA +P
Sbjct: 50 LPEWLKDNEFIHGYYRCEWPMKETILSIFSIHNETLNVWTHLIGFLLFLCLAIFTAMVIP 109
Query: 99 NVVDLQSLQHLPDVLRNA-DLHKIQTELVACLPSLPHLSDLQKLKDELKSSWNSIEVLPS 157
+ +L S A D + I +L+ +S++ ++ + + +L
Sbjct: 110 SGDNLHSNSSRSRSNATAMDYYYIHGDLMV-------MSNMTRVLRHEALAAAACLLLHD 162
Query: 158 LSRWHLLELLSSCLPHRFTHSNETSL------SVLQSMKEDIANMIAPQLI---RPIPRW 208
+ E +S+ P + +S +V Q +D + A PI RW
Sbjct: 163 PADLSQHEQISTSCPTNTSSCYTSSSSFSHLHNVRQHAIQDAGKVTAATAAAIAEPITRW 222
Query: 209 PFYAFLGGAMFCLLASSTCHLLSCHSRRLAYIMLRLDYAGIAALIATSFYPPVYYSFMCY 268
P +A+LGGAM CLLAS+ CHLL CHS R Y+ LRLDYAGIAALI SF P V+YSF+C
Sbjct: 223 PVFAYLGGAMACLLASTACHLLLCHSERANYVTLRLDYAGIAALIVASFLPIVHYSFLCD 282
Query: 269 PFFCNLYLSCITILGVATIAFSLLPVFQNPEFRTIRACLFFGMGASGVIPVIHKLILFWH 328
P+ Y + I G AT+ SL+P FQ+P R +RA LF G+ ASGV+PV HK++L+
Sbjct: 283 PWLRRAYTAAIACAGAATVTASLVPAFQSPRLRPLRAALFSGLAASGVVPVAHKMVLYGG 342
Query: 329 QPEALHTTAY-EVLMGLFYGIGALVYATRVPERWMPGKFDIAGHSHQLFHVLVVAGAYTH 387
T+A E MG Y +G VYA RVPERW PG+FD+ GHSHQLFH+LVVAGAY H
Sbjct: 343 TVREAATSARCEAAMGALYALGVAVYAARVPERWFPGRFDLVGHSHQLFHLLVVAGAYAH 402
Query: 388 YHSGLVYLKWRDVQGC 403
Y L YLKWRD C
Sbjct: 403 YLGALEYLKWRDAVKC 418
>Os03g0200000
Length = 379
Score = 284 bits (726), Expect = 8e-77, Method: Compositional matrix adjust.
Identities = 129/199 (64%), Positives = 158/199 (79%)
Query: 205 IPRWPFYAFLGGAMFCLLASSTCHLLSCHSRRLAYIMLRLDYAGIAALIATSFYPPVYYS 264
+ RWPFYA+L GAMFCLL SS CHLL+CHS +Y++LRLDYAGI LI TSFYP VYY+
Sbjct: 181 VARWPFYAYLCGAMFCLLMSSACHLLACHSEHASYVLLRLDYAGITGLIVTSFYPLVYYT 240
Query: 265 FMCYPFFCNLYLSCITILGVATIAFSLLPVFQNPEFRTIRACLFFGMGASGVIPVIHKLI 324
F+C PFF LYL IT+ G A +A SL+PVF+ PE R RA LF MG SG++P++HK++
Sbjct: 241 FLCDPFFRTLYLGFITLFGAAAVAVSLMPVFEKPELRWARAGLFACMGMSGLVPIVHKML 300
Query: 325 LFWHQPEALHTTAYEVLMGLFYGIGALVYATRVPERWMPGKFDIAGHSHQLFHVLVVAGA 384
+F +PEA+ TT YE++MG FY G +VYATRVPERWMPGKFD+AGHSHQLFHVLV+AGA
Sbjct: 301 VFGARPEAVLTTGYEMVMGAFYLAGVVVYATRVPERWMPGKFDLAGHSHQLFHVLVIAGA 360
Query: 385 YTHYHSGLVYLKWRDVQGC 403
Y HY +G+VYL WRD + C
Sbjct: 361 YAHYLAGVVYLSWRDGEAC 379
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 39/61 (63%), Positives = 51/61 (83%)
Query: 38 ALPGYMRDNEYILRHYRCEWPLPQVLLSAFSIHNETLNVWTHLIGFFIFLVLTIYTATQV 97
ALP +++ NE+I+ +YR EWP+ Q LLSAF++HNET+NVWTHLIGFF+FL LT+ AT V
Sbjct: 63 ALPAFLKHNEFIIDYYRSEWPIKQALLSAFAVHNETVNVWTHLIGFFMFLALTVCAATMV 122
Query: 98 P 98
P
Sbjct: 123 P 123
>Os02g0179500 Hly-III related proteins family protein
Length = 229
Score = 199 bits (507), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 100/195 (51%), Positives = 125/195 (64%)
Query: 205 IPRWPFYAFLGGAMFCLLASSTCHLLSCHSRRLAYIMLRLDYAGIAALIATSFYPPVYYS 264
+PRWP FL GAM CL S+T HLL+CHSRR + + +LDYAGI+A+I SF PPVYY+
Sbjct: 25 VPRWPRMVFLVGAMTCLAISATAHLLACHSRRASVVFWQLDYAGISAMIVASFVPPVYYA 84
Query: 265 FMCYPFFCNLYLSCITILGVATIAFSLLPVFQNPEFRTIRACLFFGMGASGVIPVIHKLI 324
F+C+ YLS I+ LG + L P +P FR +RA LF MG SGV+P +H L
Sbjct: 85 FLCHRPARVAYLSAISALGALVVGALLSPPCSSPRFRRLRAALFLAMGLSGVVPALHALW 144
Query: 325 LFWHQPEALHTTAYEVLMGLFYGIGALVYATRVPERWMPGKFDIAGHSHQLFHVLVVAGA 384
L W + EV MGL Y GA Y +RVPE+W PG FD+ GHSHQ+FHVLV+ GA
Sbjct: 145 LNWGHAACYLALSLEVAMGLAYAAGAWFYVSRVPEKWRPGVFDVVGHSHQIFHVLVLVGA 204
Query: 385 YTHYHSGLVYLKWRD 399
THY + V L WR+
Sbjct: 205 VTHYVAVDVLLNWRE 219
>Os06g0643700 Hly-III related proteins family protein
Length = 376
Score = 193 bits (491), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 104/197 (52%), Positives = 129/197 (65%)
Query: 207 RWPFYAFLGGAMFCLLASSTCHLLSCHSRRLAYIMLRLDYAGIAALIATSFYPPVYYSFM 266
RWPF+ FL GAMFCLL+S+ CHLLSCHS RL ++RLDY GIA +I SF+PP+YY F
Sbjct: 177 RWPFFVFLAGAMFCLLSSAACHLLSCHSHRLNLFLIRLDYTGIAVMIVVSFFPPIYYIFQ 236
Query: 267 CYPFFCNLYLSCITILGVATIAFSLLPVFQNPEFRTIRACLFFGMGASGVIPVIHKLILF 326
C P + +YLS IT GVAT+ + P +R RA LF MG SGV+P H + +
Sbjct: 237 CEPRWQVVYLSAITAAGVATVYALMSPRLSAARYRAHRALLFVAMGLSGVVPAAHAVAVN 296
Query: 327 WHQPEALHTTAYEVLMGLFYGIGALVYATRVPERWMPGKFDIAGHSHQLFHVLVVAGAYT 386
WH+P T AYE M Y G Y TRVPERW PG FD+ GHSHQ+FH LV+AGA
Sbjct: 297 WHEPRRNVTLAYEGAMAASYLAGTAFYLTRVPERWRPGMFDLCGHSHQIFHALVIAGALA 356
Query: 387 HYHSGLVYLKWRDVQGC 403
HY + +V+++ RD GC
Sbjct: 357 HYAAAIVFIQARDEMGC 373
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 37/66 (56%), Positives = 47/66 (71%), Gaps = 1/66 (1%)
Query: 39 LPGYMRDNEYILRHYRCEWPLPQVLLSAFSIHNETLNVWTHLIGFFIFLVLTIYTATQ-V 97
LP YM++NE+IL +YR EWP+ LLS FS HNET+N+WTHL+GF +F LT+ Q
Sbjct: 56 LPDYMKENEFILDYYRSEWPILNALLSLFSWHNETINIWTHLLGFVLFFGLTVLHLGQYF 115
Query: 98 PNVVDL 103
P V DL
Sbjct: 116 PQVADL 121
>Os06g0652200 Hly-III related proteins family protein
Length = 195
Score = 189 bits (479), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 94/182 (51%), Positives = 116/182 (63%)
Query: 218 MFCLLASSTCHLLSCHSRRLAYIMLRLDYAGIAALIATSFYPPVYYSFMCYPFFCNLYLS 277
M CL S+T HLL+CHSRR + + +LDYAGIA +I SF+PPVYY+F+ YLS
Sbjct: 1 MTCLAVSATAHLLACHSRRFSRLFWQLDYAGIAVMIVASFFPPVYYAFLGRAVAQVAYLS 60
Query: 278 CITILGVATIAFSLLPVFQNPEFRTIRACLFFGMGASGVIPVIHKLILFWHQPEALHTTA 337
IT LG +A L P +P R IRA LF MG SGV+P +H L L W PE +
Sbjct: 61 AITALGALVVAALLAPARSSPRLRHIRAGLFVSMGLSGVVPALHALWLNWGHPECYLALS 120
Query: 338 YEVLMGLFYGIGALVYATRVPERWMPGKFDIAGHSHQLFHVLVVAGAYTHYHSGLVYLKW 397
E++MGL Y GA Y RVPERW PG FD GHSHQ+FHVLV+AGA THY + + + W
Sbjct: 121 LELVMGLVYAAGAGFYVARVPERWRPGAFDCVGHSHQIFHVLVLAGALTHYAATAILIDW 180
Query: 398 RD 399
R+
Sbjct: 181 RE 182
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.329 0.141 0.463
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,941,526
Number of extensions: 529808
Number of successful extensions: 1381
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 1374
Number of HSP's successfully gapped: 9
Length of query: 403
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 300
Effective length of database: 11,657,759
Effective search space: 3497327700
Effective search space used: 3497327700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 157 (65.1 bits)