Os06g0643700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hly-III related proteins family protein.
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Os06g0643700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hly-III related proteins family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 97.55 | 0.464 | 10.8 | -2.68 | 0.558 | 1.23 | 1.05 | -2.77 | -0.649 | 5.39 | 24.67 | 1376 | -- | -- |
| 103.46 | 0.474 | 10.7 | -1.99 | 0.579 | 0.923 | 1.07 | -- | -0.597 | 5.28 | 22.73 | 7013 | -- | -- |
| 99.64 | 0.465 | 10.8 | -2.51 | 0.582 | 1.21 | -- | -2.26 | -0.599 | 5.97 | 24.87 | 1355 | -- | -- |
| 103.98 | 0.475 | 10.7 | -1.96 | 0.589 | 0.996 | -- | -- | -0.579 | 5.76 | 22.99 | 1350 | -- | -- |
| 115.91 | 0.501 | 10.8 | -2.6 | -- | 1.32 | -- | -2.53 | -0.648 | -- | 24.4 | 1319 | -- | -- |
| 136.81 | 0.548 | 10.7 | -1.56 | 0.624 | -- | 1.27 | -- | -0.312 | 4.91 | -- | -- | -- | -- |
| 140.44 | 0.555 | 10.7 | -1.57 | 0.644 | -- | -- | -- | -0.318 | 5.46 | -- | -- | -- | -- |
| 118.42 | 0.507 | 10.7 | -1.9 | -- | 1.07 | -- | -- | -0.44 | -- | 24.78 | 1307 | -- | -- |
| 188.79 | 0.64 | 10.6 | -- | 0.575 | 0.591 | -- | -- | -0.0921 | 6.08 | 27.8 | 1265 | -- | -- |
| 162.04 | 0.595 | 10.7 | -1.54 | -- | -- | -- | -- | -0.302 | -- | -- | -- | -- | -- |
| 205.02 | 0.67 | 10.6 | -- | 0.619 | -- | -- | -- | -0.143 | 5.57 | -- | -- | -- | -- |
| 205.95 | 0.668 | 10.6 | -- | -- | 0.631 | -- | -- | -0.108 | -- | 27.1 | 1281 | -- | -- |
| 224.92 | 0.7 | 10.6 | -- | -- | -- | -- | -- | -0.131 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 92.78 | humidity | 70 | 14400 | < th | dose independent | rect. | 19 | 13 |
| 3 | 93.39 | humidity | 70 | 14400 | > th | dose independent | rect. | 19 | 13 |
| 5 | 93.54 | humidity | 70 | 14400 | < th | dose independent | rect. | 18 | 4 |
| 16 | 94.55 | humidity | 70 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 17 | 94.91 | humidity | 70 | 14400 | < th | dose dependent | rect. | 17 | 14 |
| 19 | 94.99 | humidity | 70 | 14400 | < th | dose dependent | rect. | 17 | 5 |
| 34 | 95.61 | humidity | 70 | 14400 | > th | dose independent | rect. | 18 | 4 |
| 35 | 95.61 | humidity | 70 | 14400 | > th | dose independent | rect. | 18 | 6 |
| 37 | 95.62 | humidity | 70 | 14400 | > th | dose independent | rect. | 18 | 9 |
| 44 | 95.70 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 4 |
| 45 | 95.79 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 59 | 96.19 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 6 |
| 111 | 96.86 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 14 |
| 116 | 96.89 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 12 |
| 154 | 97.15 | temperature | 25 | 1440 | > th | dose dependent | sin | 19 | NA |
| 258 | 97.80 | temperature | 25 | 1440 | > th | dose dependent | rect. | 21 | 21 |
| 348 | 98.03 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 360 | 98.05 | wind | 7 | 43200 | > th | dose independent | rect. | 17 | 23 |
| 373 | 98.09 | humidity | 90 | 43200 | < th | dose independent | rect. | 20 | 2 |
| 395 | 98.16 | wind | 7 | 43200 | < th | dose independent | rect. | 17 | 23 |
| 397 | 98.19 | wind | 7 | 43200 | > th | dose independent | rect. | 15 | 23 |
| 400 | 98.20 | wind | 7 | 43200 | > th | dose independent | rect. | 9 | 21 |
| 424 | 98.34 | wind | 7 | 43200 | < th | dose independent | rect. | 10 | 20 |
| 429 | 98.36 | wind | 7 | 43200 | > th | dose independent | rect. | 3 | 20 |
| 432 | 98.36 | wind | 7 | 43200 | < th | dose independent | rect. | 15 | 23 |
| 442 | 98.38 | wind | 7 | 43200 | > th | dose independent | rect. | 3 | 23 |
| 443 | 98.38 | wind | 7 | 43200 | > th | dose independent | rect. | 24 | 23 |
| 451 | 98.39 | humidity | 90 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 484 | 98.46 | wind | 7 | 43200 | > th | dose independent | no | NA | NA |
| 485 | 98.46 | wind | 7 | 43200 | < th | dose independent | rect. | 3 | 20 |
| 497 | 98.48 | wind | 7 | 43200 | < th | dose independent | rect. | 19 | 23 |
| 504 | 98.49 | wind | 7 | 43200 | < th | dose independent | rect. | 19 | 21 |
| 525 | 98.50 | wind | 7 | 43200 | < th | dose independent | rect. | 3 | 23 |
| 534 | 98.51 | wind | 7 | 43200 | < th | dose independent | rect. | 24 | 23 |
| 569 | 98.55 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 23 |
| 587 | 98.58 | temperature | 10 | 1440 | > th | dose dependent | rect. | 13 | 4 |
| 593 | 98.60 | wind | 7 | 43200 | < th | dose independent | no | NA | NA |
| 615 | 98.64 | radiation | 1 | 4320 | < th | dose independent | rect. | 18 | 9 |
| 627 | 98.66 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 3 |
| 651 | 98.71 | radiation | 1 | 4320 | < th | dose independent | rect. | 18 | 5 |
| 654 | 98.72 | radiation | 1 | 4320 | < th | dose independent | rect. | 18 | 1 |
| 685 | 98.80 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 3 |
| 721 | 98.89 | humidity | 90 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 729 | 98.91 | temperature | 10 | 1440 | > th | dose dependent | rect. | 11 | 6 |
| 760 | 98.99 | wind | 7 | 43200 | > th | dose dependent | rect. | 11 | 21 |
| 785 | 99.09 | wind | 7 | 43200 | > th | dose independent | sin | 17 | NA |
| 791 | 99.10 | wind | 7 | 43200 | > th | dose dependent | sin | 16 | NA |
| 803 | 99.12 | humidity | 50 | 1440 | > th | dose dependent | rect. | 13 | 10 |
| 820 | 99.17 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 3 |
| 854 | 99.26 | humidity | 90 | 43200 | > th | dose independent | rect. | 9 | 2 |
| 873 | 99.29 | wind | 7 | 43200 | < th | dose independent | sin | 17 | NA |
| 880 | 99.29 | wind | 5 | 43200 | > th | dose dependent | rect. | 9 | 14 |
| 885 | 99.31 | humidity | 50 | 1440 | > th | dose dependent | sin | 17 | NA |
| 938 | 99.39 | wind | 7 | 43200 | > th | dose independent | sin | 2 | NA |
| 955 | 99.40 | wind | 5 | 43200 | > th | dose dependent | rect. | 17 | 23 |
| 966 | 99.43 | wind | 7 | 43200 | < th | dose independent | sin | 2 | NA |
| 974 | 99.44 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 22 |
| 986 | 99.46 | humidity | 90 | 1440 | < th | dose dependent | rect. | 15 | 8 |
| 992 | 99.46 | wind | 5 | 43200 | > th | dose dependent | rect. | 19 | 21 |