BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0643700 Os06g0643700|J075081P22
(376 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G20270.1 | chr5:6841025-6842656 REVERSE LENGTH=333 265 4e-71
AT4G30850.1 | chr4:15020540-15022278 REVERSE LENGTH=359 225 3e-59
AT2G24150.1 | chr2:10265632-10267345 REVERSE LENGTH=345 216 2e-56
AT4G37680.1 | chr4:17701231-17702568 FORWARD LENGTH=386 159 2e-39
AT4G38320.1 | chr4:17949078-17950383 FORWARD LENGTH=375 152 4e-37
AT2G40710.1 | chr2:16981087-16981368 REVERSE LENGTH=94 76 2e-14
AT4G38290.1 | chr4:17942871-17943909 FORWARD LENGTH=109 58 9e-09
>AT5G20270.1 | chr5:6841025-6842656 REVERSE LENGTH=333
Length = 332
Score = 265 bits (676), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 141/327 (43%), Positives = 181/327 (55%), Gaps = 51/327 (15%)
Query: 49 RLVSYHELPDYMKENEFILDYYRSEWPILNALLSLFSWHNETINIWXXXXXXXXXXXXXX 108
L+SY ELP+YMK+NE+IL+YYR++W I +A S+FS+HNE++N+W
Sbjct: 55 ELMSYCELPEYMKDNEYILNYYRADWSIRDAFFSVFSFHNESLNVWTHLIGFIFFVAL-- 112
Query: 109 XXXXQYFPQVADLIGHLSW-PI-SKVAENVSSNIGDVLSGAASFMQXXXXXXXXXXXXXX 166
VA++I H + P+ +K NV+
Sbjct: 113 --------TVANIIHHDGFFPVDAKSPGNVT----------------------------- 135
Query: 167 XXXXXXXXXXRWPFFVFLAGAMFXXXXXXXXXXXXXXXXRLNLFLIRLDYTGIAVMIVVS 226
RWPFFVFL G+MF LN+FL+R+DY GI MI+ S
Sbjct: 136 ----------RWPFFVFLGGSMFCLLASSICHLFCCHSKELNVFLLRIDYAGITAMIITS 185
Query: 227 FFPPIYYIFQCEPRWQVVYLSAITAAGVATVYALMSPRLSAARYRAHRALLFVAMGLSGV 286
FFPPI+YIFQC PRW +YL+ IT+ G+ T+ L +P LSA +YRA RALLF +MGL G+
Sbjct: 186 FFPPIFYIFQCTPRWYFIYLAGITSMGIFTIITLFTPSLSAPKYRAFRALLFASMGLFGI 245
Query: 287 VPAAHAVAVNWHEPRRNVTLAYEGAMAASYLAGTAFYLTRVPERWRPGMFDLCGHSHQIF 346
VPAAHA+ VNW P+RNVTL YE MA YL GT FY+ RVPER +PG FD GHSHQIF
Sbjct: 246 VPAAHALVVNWGNPQRNVTLVYELLMAVFYLVGTGFYVGRVPERLKPGWFDRVGHSHQIF 305
Query: 347 HXXXXXXXXXXXXXXXXFIQARDEMGC 373
H F+ RD +GC
Sbjct: 306 HVFVLLGALSHYAAALLFLDWRDHVGC 332
>AT4G30850.1 | chr4:15020540-15022278 REVERSE LENGTH=359
Length = 358
Score = 225 bits (574), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 122/305 (40%), Positives = 160/305 (52%), Gaps = 11/305 (3%)
Query: 49 RLVSYHELPDYMKENEFILDYYRSEWPILNALLSLFSWHNETINIWXXXXXXXXXXXXXX 108
RL+ + ELP Y+K+NEFI ++YR EW I LS FSWHNET+NIW
Sbjct: 30 RLMKFEELPRYLKDNEFIHNHYRCEWSIKETFLSAFSWHNETLNIWTHLCGFAIFTWMMV 89
Query: 109 XXXXQYFP-QVADLIGHLS-----WPISKVAENVSSNIGDVLSGAASFMQXXXXXXXXXX 162
+ +A + LS WP +A + DV + +
Sbjct: 90 VSSMETTELGLAGFVSLLSGATIRWPWPSMAMS-----KDVYFSSDQTLHHDLNVTHTRS 144
Query: 163 XXXXXXXXXXXXXXRWPFFVFLAGAMFXXXXXXXXXXXXXXXXRLNLFLIRLDYTGIAVM 222
+WP+ VFL GAM R NLF RLDY GI++M
Sbjct: 145 LLNSQGDVNYEAIPKWPWLVFLTGAMGCLICSSMSHLFACHSRRFNLFFWRLDYAGISLM 204
Query: 223 IVVSFFPPIYYIFQCEPRWQVVYLSAITAAGVATVYALMSPRLSAARYRAHRALLFVAMG 282
IV SFF PIYY F C W++ YLS+I+ G+ ++ L+SP LSA R+R+ RA LF+ MG
Sbjct: 205 IVCSFFAPIYYAFSCHTYWRLFYLSSISILGLLAIFTLLSPSLSAPRFRSFRAALFLTMG 264
Query: 283 LSGVVPAAHAVAVNWHEPRRNVTLAYEGAMAASYLAGTAFYLTRVPERWRPGMFDLCGHS 342
SGV+PA H + ++ P + L YE AMA Y G AFY+TR+PERW+PG FD+ GHS
Sbjct: 265 FSGVIPATHVLYLHKDHPNVLIALVYELAMAVLYATGAAFYVTRIPERWKPGAFDIAGHS 324
Query: 343 HQIFH 347
HQIFH
Sbjct: 325 HQIFH 329
>AT2G24150.1 | chr2:10265632-10267345 REVERSE LENGTH=345
Length = 344
Score = 216 bits (550), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 116/307 (37%), Positives = 157/307 (51%), Gaps = 32/307 (10%)
Query: 49 RLVSYHELPDYMKENEFILDYYRSEWPILNALLSLFSWHNETINIWXXXXXXXXXXXXXX 108
RL+ + +LP+Y+K+NEFI ++YR +W + + LS FSWHNET+NIW
Sbjct: 33 RLMKFEDLPEYLKDNEFIHNHYRCQWSLKDTFLSAFSWHNETLNIW-------------- 78
Query: 109 XXXXQYFPQVADLIGH---LSWPISKVAENVSSNIGDVLSGAASFM-----QXXXXXXXX 160
LIG L + E ++ V +G A
Sbjct: 79 ----------THLIGFGIFLWMTVVSCLETTEISLAGVFNGMAGVRICLSSNQTLLHDSN 128
Query: 161 XXXXXXXXXXXXXXXXRWPFFVFLAGAMFXXXXXXXXXXXXXXXXRLNLFLIRLDYTGIA 220
+WP+ V+L GAM R N+F RLDY GI+
Sbjct: 129 VTHHISCLTSQGEAIPKWPWLVYLVGAMGCLICSSVSHLLACHSKRFNVFFWRLDYAGIS 188
Query: 221 VMIVVSFFPPIYYIFQCEPRWQVVYLSAITAAGVATVYALMSPRLSAARYRAHRALLFVA 280
+MIV SFF PIYY F C P ++++YLS+I+ G+ + L+SP LS R+R RA LF+A
Sbjct: 189 LMIVASFFAPIYYAFSCHPNFRLLYLSSISILGLLAIITLLSPALSTPRFRPFRANLFLA 248
Query: 281 MGLSGVVPAAHAVAVNWHEPRRNVTLAYEGAMAASYLAGTAFYLTRVPERWRPGMFDLCG 340
MG S V+PA H + + W P + L YE A A SY G FY++RVPERW+PG FD+ G
Sbjct: 249 MGSSAVIPATHVLCLYWDHPNVFIALGYEIATALSYFVGATFYVSRVPERWKPGAFDMAG 308
Query: 341 HSHQIFH 347
HSHQIFH
Sbjct: 309 HSHQIFH 315
>AT4G37680.1 | chr4:17701231-17702568 FORWARD LENGTH=386
Length = 385
Score = 159 bits (402), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 78/197 (39%), Positives = 103/197 (52%)
Query: 177 RWPFFVFLAGAMFXXXXXXXXXXXXXXXXRLNLFLIRLDYTGIAVMIVVSFFPPIYYIFQ 236
RWPF+ FL GAMF R++ ++RLDY GIA +I SF+PP+YY F
Sbjct: 189 RWPFYAFLGGAMFCLLASSTCHLLSCHSERVSYIMLRLDYAGIAALIATSFYPPVYYSFM 248
Query: 237 CEPRWQVVYLSAITAAGVATVYALMSPRLSAARYRAHRALLFVAMGLSGVVPAAHAVAVN 296
C+P + +YL IT G+ATV + P + +R RA LF MG SG+ P H + +
Sbjct: 249 CDPFFCNLYLGFITILGIATVLVSLLPVFQSPEFRVVRASLFFGMGFSGLAPILHKLIIF 308
Query: 297 WHEPRRNVTLAYEGAMAASYLAGTAFYLTRVPERWRPGMFDLCGHSHQIFHXXXXXXXXX 356
W +P T YE M Y G Y TR+PERW PG FD+ GHSHQ+FH
Sbjct: 309 WDQPEALHTTGYEILMGLLYGLGALVYATRIPERWMPGKFDIAGHSHQLFHVLVVAGAFT 368
Query: 357 XXXXXXXFIQARDEMGC 373
+++ RD GC
Sbjct: 369 HYRAGLVYLKWRDIEGC 385
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 26/46 (56%), Positives = 38/46 (82%)
Query: 49 RLVSYHELPDYMKENEFILDYYRSEWPILNALLSLFSWHNETINIW 94
+LV +H LP Y+++NE+I+ +YRSEWPI LLS+F+ HNET+N+W
Sbjct: 38 QLVEFHSLPAYLRDNEYIIGHYRSEWPIKQILLSIFTIHNETLNVW 83
>AT4G38320.1 | chr4:17949078-17950383 FORWARD LENGTH=375
Length = 374
Score = 152 bits (383), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 72/171 (42%), Positives = 95/171 (55%)
Query: 177 RWPFFVFLAGAMFXXXXXXXXXXXXXXXXRLNLFLIRLDYTGIAVMIVVSFFPPIYYIFQ 236
RWPF+ FL GA+F R++ ++RLDY GIA +I SF+PP+YY F
Sbjct: 189 RWPFYAFLGGAIFCLLASSTCHLLSCHSERVSYIMLRLDYAGIAALIATSFYPPVYYSFM 248
Query: 237 CEPRWQVVYLSAITAAGVATVYALMSPRLSAARYRAHRALLFVAMGLSGVVPAAHAVAVN 296
C+P + +YL IT G+ATV + P + +R RA LF MG SG+ P H + +
Sbjct: 249 CDPFFCNLYLGFITILGIATVLVSLLPVFQSLEFRVVRASLFFGMGFSGLAPILHKLIIF 308
Query: 297 WHEPRRNVTLAYEGAMAASYLAGTAFYLTRVPERWRPGMFDLCGHSHQIFH 347
W +P YE M Y G Y TR+PERW PG FD+ GHSHQ+FH
Sbjct: 309 WDQPEALHMTGYEILMGLLYGLGAVVYATRIPERWMPGKFDIAGHSHQLFH 359
Score = 67.8 bits (164), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 26/46 (56%), Positives = 38/46 (82%)
Query: 49 RLVSYHELPDYMKENEFILDYYRSEWPILNALLSLFSWHNETINIW 94
+LV +H LP Y+++NE+I+ +YRSEWPI LLS+F+ HNET+N+W
Sbjct: 38 QLVEFHSLPAYLRDNEYIIGHYRSEWPIKQILLSIFTIHNETLNVW 83
>AT2G40710.1 | chr2:16981087-16981368 REVERSE LENGTH=94
Length = 93
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 46/93 (49%)
Query: 281 MGLSGVVPAAHAVAVNWHEPRRNVTLAYEGAMAASYLAGTAFYLTRVPERWRPGMFDLCG 340
MG SG+ P H + + W +P T YE M Y G Y TR+PERW PG FD+ G
Sbjct: 1 MGFSGLAPILHKLIIFWDQPEALHTTCYEILMGLLYGLGALVYATRIPERWMPGKFDIAG 60
Query: 341 HSHQIFHXXXXXXXXXXXXXXXXFIQARDEMGC 373
HSHQ+FH +++ RD GC
Sbjct: 61 HSHQLFHVLVVAGAFTHYRAGLVYLKWRDIEGC 93
>AT4G38290.1 | chr4:17942871-17943909 FORWARD LENGTH=109
Length = 108
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 301 RRNVTL-AYEGAMAASYLAGTAFYLTRVPERWRPGMFDLCGHSHQIFHXXXXXXXXXXXX 359
R ++ L YE M Y G Y TR+PERW PG FD+ GHSHQ+FH
Sbjct: 35 REDIYLTGYEILMGLLYGLGALVYATRIPERWMPGKFDIAGHSHQLFHVLVVAGAFTHYR 94
Query: 360 XXXXFIQARDEMGC 373
+++ RD GC
Sbjct: 95 AGLVYLKWRDIEGC 108
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.327 0.138 0.447
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,396,544
Number of extensions: 157275
Number of successful extensions: 404
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 399
Number of HSP's successfully gapped: 12
Length of query: 376
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 276
Effective length of database: 8,364,969
Effective search space: 2308731444
Effective search space used: 2308731444
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 112 (47.8 bits)