BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0643700 Os06g0643700|J075081P22
(376 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0643700 Hly-III related proteins family protein 505 e-143
Os03g0200000 201 5e-52
Os03g0232900 Hly-III related proteins family protein 166 3e-41
Os02g0179500 Hly-III related proteins family protein 165 7e-41
Os06g0652200 Hly-III related proteins family protein 155 5e-38
Os12g0511200 Hly-III related proteins family protein 132 3e-31
>Os06g0643700 Hly-III related proteins family protein
Length = 376
Score = 505 bits (1301), Expect = e-143, Method: Compositional matrix adjust.
Identities = 273/376 (72%), Positives = 273/376 (72%)
Query: 1 MGEEAAMATMESAYHDELXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCRLVSYHELPDYM 60
MGEEAAMATMESAYHDEL CRLVSYHELPDYM
Sbjct: 1 MGEEAAMATMESAYHDELAPAAAPAPAKGGGSKKKRKQQKREEKRKECRLVSYHELPDYM 60
Query: 61 KENEFILDYYRSEWPILNALLSLFSWHNETINIWXXXXXXXXXXXXXXXXXXQYFPQVAD 120
KENEFILDYYRSEWPILNALLSLFSWHNETINIW QYFPQVAD
Sbjct: 61 KENEFILDYYRSEWPILNALLSLFSWHNETINIWTHLLGFVLFFGLTVLHLGQYFPQVAD 120
Query: 121 LIGHLSWPISKVAENVSSNIGDVLSGAASFMQXXXXXXXXXXXXXXXXXXXXXXXXRWPF 180
LIGHLSWPISKVAENVSSNIGDVLSGAASFMQ RWPF
Sbjct: 121 LIGHLSWPISKVAENVSSNIGDVLSGAASFMQASPASSAGAMAAAWPVTAAAAATTRWPF 180
Query: 181 FVFLAGAMFXXXXXXXXXXXXXXXXRLNLFLIRLDYTGIAVMIVVSFFPPIYYIFQCEPR 240
FVFLAGAMF RLNLFLIRLDYTGIAVMIVVSFFPPIYYIFQCEPR
Sbjct: 181 FVFLAGAMFCLLSSAACHLLSCHSHRLNLFLIRLDYTGIAVMIVVSFFPPIYYIFQCEPR 240
Query: 241 WQVVYLSAITAAGVATVYALMSPRLSAARYRAHRALLFVAMGLSGVVPAAHAVAVNWHEP 300
WQVVYLSAITAAGVATVYALMSPRLSAARYRAHRALLFVAMGLSGVVPAAHAVAVNWHEP
Sbjct: 241 WQVVYLSAITAAGVATVYALMSPRLSAARYRAHRALLFVAMGLSGVVPAAHAVAVNWHEP 300
Query: 301 RRNVTLAYEGAMAASYLAGTAFYLTRVPERWRPGMFDLCGHSHQIFHXXXXXXXXXXXXX 360
RRNVTLAYEGAMAASYLAGTAFYLTRVPERWRPGMFDLCGHSHQIFH
Sbjct: 301 RRNVTLAYEGAMAASYLAGTAFYLTRVPERWRPGMFDLCGHSHQIFHALVIAGALAHYAA 360
Query: 361 XXXFIQARDEMGCPAP 376
FIQARDEMGCPAP
Sbjct: 361 AIVFIQARDEMGCPAP 376
>Os03g0200000
Length = 379
Score = 201 bits (512), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 120/331 (36%), Positives = 152/331 (45%), Gaps = 14/331 (4%)
Query: 49 RLVSYHELPDYMKENEFILDYYRSEWPILNALLSLFSWHNETINIWXXXXXXXXXXXXXX 108
LVSY LP ++K NEFI+DYYRSEWPI ALLS F+ HNET+N+W
Sbjct: 57 ELVSYDALPAFLKHNEFIIDYYRSEWPIKQALLSAFAVHNETVNVWTHLIGFFMFLALTV 116
Query: 109 XXXXQYFPQVADLIGHLSWPISKVAENVSSNIGDVL------SGAASFMQXXXXXXXXXX 162
A ++ S S N + N ++ +GAA +Q
Sbjct: 117 C--------AATMVPMESSATSMTMANNTGNPMVLMMMSYGSNGAAMAVQALRNVSVESE 168
Query: 163 XXXXXXXXXXXXXXRWPFFVFLAGAMFXXXXXXXXXXXXXXXXRLNLFLIRLDYTGIAVM 222
RWPF+ +L GAMF + L+RLDY GI +
Sbjct: 169 LAAAALSAAGDQVARWPFYAYLCGAMFCLLMSSACHLLACHSEHASYVLLRLDYAGITGL 228
Query: 223 IVVSFFPPIYYIFQCEPRWQVVYLSAITAAGVATVYALMSPRLSAARYRAHRALLFVAMG 282
IV SF+P +YY F C+P ++ +YL IT G A V + P R RA LF MG
Sbjct: 229 IVTSFYPLVYYTFLCDPFFRTLYLGFITLFGAAAVAVSLMPVFEKPELRWARAGLFACMG 288
Query: 283 LSGVVPAAHAVAVNWHEPRRNVTLAYEGAMAASYLAGTAFYLTRVPERWRPGMFDLCGHS 342
+SG+VP H + V P +T YE M A YLAG Y TRVPERW PG FDL GHS
Sbjct: 289 MSGLVPIVHKMLVFGARPEAVLTTGYEMVMGAFYLAGVVVYATRVPERWMPGKFDLAGHS 348
Query: 343 HQIFHXXXXXXXXXXXXXXXXFIQARDEMGC 373
HQ+FH ++ RD C
Sbjct: 349 HQLFHVLVIAGAYAHYLAGVVYLSWRDGEAC 379
>Os03g0232900 Hly-III related proteins family protein
Length = 403
Score = 166 bits (420), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 84/197 (42%), Positives = 104/197 (52%)
Query: 177 RWPFFVFLAGAMFXXXXXXXXXXXXXXXXRLNLFLIRLDYTGIAVMIVVSFFPPIYYIFQ 236
RWPF+ FL GAMF RL ++RLDY GIA +I SF+PP+YY F
Sbjct: 207 RWPFYAFLGGAMFCLLASSTCHLLSCHSRRLAYIMLRLDYAGIAALIATSFYPPVYYSFM 266
Query: 237 CEPRWQVVYLSAITAAGVATVYALMSPRLSAARYRAHRALLFVAMGLSGVVPAAHAVAVN 296
C P + +YLS IT GVAT+ + P +R RA LF MG SGV+P H + +
Sbjct: 267 CYPFFCNLYLSCITILGVATIAFSLLPVFQNPEFRTIRACLFFGMGASGVIPVIHKLILF 326
Query: 297 WHEPRRNVTLAYEGAMAASYLAGTAFYLTRVPERWRPGMFDLCGHSHQIFHXXXXXXXXX 356
WH+P T AYE M Y G Y TRVPERW PG FD+ GHSHQ+FH
Sbjct: 327 WHQPEALHTTAYEVLMGLFYGIGALVYATRVPERWMPGKFDIAGHSHQLFHVLVVAGAYT 386
Query: 357 XXXXXXXFIQARDEMGC 373
+++ RD GC
Sbjct: 387 HYHSGLVYLKWRDVQGC 403
>Os02g0179500 Hly-III related proteins family protein
Length = 229
Score = 165 bits (417), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 87/171 (50%), Positives = 108/171 (63%)
Query: 177 RWPFFVFLAGAMFXXXXXXXXXXXXXXXXRLNLFLIRLDYTGIAVMIVVSFFPPIYYIFQ 236
RWP VFL GAM R ++ +LDY GI+ MIV SF PP+YY F
Sbjct: 27 RWPRMVFLVGAMTCLAISATAHLLACHSRRASVVFWQLDYAGISAMIVASFVPPVYYAFL 86
Query: 237 CEPRWQVVYLSAITAAGVATVYALMSPRLSAARYRAHRALLFVAMGLSGVVPAAHAVAVN 296
C +V YLSAI+A G V AL+SP S+ R+R RA LF+AMGLSGVVPA HA+ +N
Sbjct: 87 CHRPARVAYLSAISALGALVVGALLSPPCSSPRFRRLRAALFLAMGLSGVVPALHALWLN 146
Query: 297 WHEPRRNVTLAYEGAMAASYLAGTAFYLTRVPERWRPGMFDLCGHSHQIFH 347
W + L+ E AM +Y AG FY++RVPE+WRPG+FD+ GHSHQIFH
Sbjct: 147 WGHAACYLALSLEVAMGLAYAAGAWFYVSRVPEKWRPGVFDVVGHSHQIFH 197
>Os06g0652200 Hly-III related proteins family protein
Length = 195
Score = 155 bits (392), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 82/142 (57%), Positives = 94/142 (66%)
Query: 206 RLNLFLIRLDYTGIAVMIVVSFFPPIYYIFQCEPRWQVVYLSAITAAGVATVYALMSPRL 265
R + +LDY GIAVMIV SFFPP+YY F QV YLSAITA G V AL++P
Sbjct: 19 RFSRLFWQLDYAGIAVMIVASFFPPVYYAFLGRAVAQVAYLSAITALGALVVAALLAPAR 78
Query: 266 SAARYRAHRALLFVAMGLSGVVPAAHAVAVNWHEPRRNVTLAYEGAMAASYLAGTAFYLT 325
S+ R R RA LFV+MGLSGVVPA HA+ +NW P + L+ E M Y AG FY+
Sbjct: 79 SSPRLRHIRAGLFVSMGLSGVVPALHALWLNWGHPECYLALSLELVMGLVYAAGAGFYVA 138
Query: 326 RVPERWRPGMFDLCGHSHQIFH 347
RVPERWRPG FD GHSHQIFH
Sbjct: 139 RVPERWRPGAFDCVGHSHQIFH 160
>Os12g0511200 Hly-III related proteins family protein
Length = 418
Score = 132 bits (333), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 81/198 (40%), Positives = 99/198 (50%), Gaps = 1/198 (0%)
Query: 177 RWPFFVFLAGAMFXXXXXXXXXXXXXXXXRLNLFLIRLDYTGIAVMIVVSFFPPIYYIFQ 236
RWP F +L GAM R N +RLDY GIA +IV SF P ++Y F
Sbjct: 221 RWPVFAYLGGAMACLLASTACHLLLCHSERANYVTLRLDYAGIAALIVASFLPIVHYSFL 280
Query: 237 CEPRWQVVYLSAITAAGVATVYALMSPRLSAARYRAHRALLFVAMGLSGVVPAAHAVAVN 296
C+P + Y +AI AG ATV A + P + R R RA LF + SGVVP AH + +
Sbjct: 281 CDPWLRRAYTAAIACAGAATVTASLVPAFQSPRLRPLRAALFSGLAASGVVPVAHKMVLY 340
Query: 297 WHEPRRNVTLA-YEGAMAASYLAGTAFYLTRVPERWRPGMFDLCGHSHQIFHXXXXXXXX 355
R T A E AM A Y G A Y RVPERW PG FDL GHSHQ+FH
Sbjct: 341 GGTVREAATSARCEAAMGALYALGVAVYAARVPERWFPGRFDLVGHSHQLFHLLVVAGAY 400
Query: 356 XXXXXXXXFIQARDEMGC 373
+++ RD + C
Sbjct: 401 AHYLGALEYLKWRDAVKC 418
Score = 72.0 bits (175), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 28/47 (59%), Positives = 37/47 (78%)
Query: 48 CRLVSYHELPDYMKENEFILDYYRSEWPILNALLSLFSWHNETINIW 94
C LV Y ELP+++K+NEFI YYR EWP+ +LS+FS HNET+N+W
Sbjct: 42 CELVGYEELPEWLKDNEFIHGYYRCEWPMKETILSIFSIHNETLNVW 88
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.327 0.138 0.447
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,633,375
Number of extensions: 259389
Number of successful extensions: 790
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 780
Number of HSP's successfully gapped: 9
Length of query: 376
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 274
Effective length of database: 11,709,973
Effective search space: 3208532602
Effective search space used: 3208532602
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 157 (65.1 bits)