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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0652200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hly-III related proteins family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.1 (0.0508) R2 : 0.696
β1 : -- (--) R2dD : -- R2D : --
β2 : 3.92 (0.133) R2dC : 0.586 R2C : 0.547
β3 : -2.25 (0.153) R2dE : 0.145 R2E : 0.112
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.161 (0.107) R2dN8 : 0.00157 R2N8 : -0.000449
σ : 0.954
deviance : 419.29
__
_____
C
peak time of C : 5.75
E
wheather : temperature
threshold : 13.79
memory length : 42
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 21
open length of G : 5.98

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
410.41 0.952 6.12 -0.491 3.95 -2.19 -0.654 -1.22 -0.23 5.63 11.01 35 21 5.97
413.13 0.947 6.11 -0.465 3.96 -2.23 -0.621 -- -0.22 5.63 11.69 32 21.1 5.95
411.36 0.945 6.12 -0.485 3.95 -2.17 -- -1.21 -0.226 5.65 11.17 37 21 5.97
414.01 0.948 6.11 -0.459 3.92 -2.21 -- -- -0.21 5.7 12.69 41 21 5.97
1126.42 1.57 6.17 -0.374 -- -2.3 -- -1.47 -0.0722 -- 12.58 16 19.8 7.32
521.4 1.07 6.11 -0.516 4.02 -- 0.505 -- -0.291 6.91 -- -- -- --
522.05 1.07 6.11 -0.508 4.03 -- -- -- -0.293 6.9 -- -- -- --
932.06 1.43 6.15 -0.223 -- -3.19 -- -- -0.0242 -- 12.68 6 18 9.56
419.29 0.954 6.1 -- 3.92 -2.25 -- -- -0.161 5.75 13.79 42 21 5.98
1372.43 1.73 6.2 -0.422 -- -- -- -- -0.216 -- -- -- -- --
528.85 1.08 6.1 -- 4.02 -- -- -- -0.236 6.9 -- -- -- --
816.32 1.34 6.12 -- -- -3.43 -- -- 0.115 -- 9.716 31 16.7 10.8
1377.13 1.73 6.19 -- -- -- -- -- -0.169 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 411.90 temperature 10.0 30 > th dose dependent rect. 21 6
3 413.66 temperature 25.0 270 < th dose independent rect. 23 6
4 414.05 temperature 20.0 90 > th dose independent rect. 21 6
9 417.93 temperature 20.0 270 > th dose independent rect. 19 6
12 419.57 humidity 60.0 30 > th dose dependent rect. 21 6
13 419.69 temperature 20.0 270 > th dose independent rect. 21 3
15 420.69 wind 9.0 30 < th dose dependent rect. 21 6
28 423.76 radiation 10.0 14400 < th dose dependent rect. 22 6
29 423.84 wind 7.0 30 < th dose independent rect. 21 6
30 423.91 wind 9.0 30 < th dose dependent rect. 16 11
35 425.14 precipitation 0.1 10 < th dose independent rect. 3 18
36 425.14 precipitation 0.1 10 < th dose dependent rect. 3 18
45 426.26 atmosphere 1010.0 30 < th dose independent rect. 21 6
47 427.00 temperature 30.0 30 < th dose independent rect. 21 6
48 427.00 humidity 50.0 30 > th dose independent rect. 21 6
51 427.00 atmosphere 995.0 30 > th dose independent rect. 21 6
52 427.00 radiation 1.0 30 < th dose independent rect. 21 6
57 427.00 temperature 10.0 30 > th dose independent rect. 3 18
59 427.00 atmosphere 1015.0 30 < th dose independent rect. 3 18
60 427.00 radiation 10.0 30 < th dose dependent rect. 21 6
65 427.36 precipitation 0.1 270 < th dose independent rect. 3 1
66 427.36 precipitation 0.1 270 < th dose dependent rect. 3 1
70 427.80 wind 9.0 30 < th dose independent rect. 3 18
75 427.97 temperature 15.0 270 > th dose dependent rect. 21 3
77 428.13 wind 5.0 270 < th dose independent rect. 3 1
78 428.30 precipitation 0.1 30 < th dose independent rect. 21 6
79 428.30 precipitation 0.1 30 < th dose dependent rect. 21 6
92 429.37 humidity 50.0 270 > th dose independent rect. 1 17
130 430.62 wind 1.0 270 > th dose independent rect. 3 1
171 432.36 wind 3.0 43200 < th dose dependent rect. 4 1
179 432.62 wind 5.0 30 < th dose dependent rect. 3 4
182 432.80 wind 9.0 270 < th dose dependent rect. 3 1
203 434.19 wind 5.0 270 < th dose independent rect. 15 10
221 435.53 wind 5.0 90 < th dose independent rect. 15 12
224 435.57 temperature 10.0 270 > th dose independent rect. 3 1
226 435.57 temperature 30.0 270 < th dose independent rect. 3 1
227 435.57 humidity 50.0 270 > th dose independent rect. 3 1
230 435.57 atmosphere 995.0 270 > th dose independent rect. 3 1
231 435.57 atmosphere 1010.0 270 < th dose independent rect. 3 1
233 435.57 radiation 1.0 270 < th dose independent rect. 3 1
238 435.57 temperature 10.0 270 > th dose independent rect. 4 23
239 435.57 radiation 1.0 270 < th dose dependent rect. 3 1
249 436.08 wind 3.0 30 < th dose independent rect. 3 4
258 436.52 precipitation 0.1 10 < th dose independent rect. 3 4
259 436.52 precipitation 0.1 10 < th dose dependent rect. 3 4
261 436.66 atmosphere 995.0 30 > th dose independent rect. 3 18
268 437.17 radiation 40.0 4320 > th dose dependent rect. 9 2
271 437.25 temperature 15.0 30 > th dose independent rect. 7 20
272 437.30 radiation 30.0 30 < th dose dependent rect. 7 20
277 437.46 wind 5.0 270 < th dose independent rect. 1 4
278 437.48 wind 1.0 270 > th dose independent rect. 1 3
284 437.67 humidity 50.0 270 > th dose independent rect. 14 15
287 437.86 humidity 50.0 30 > th dose independent rect. 3 18
313 438.14 radiation 40.0 4320 > th dose dependent rect. 13 22
326 438.73 temperature 30.0 270 < th dose independent rect. 20 14
330 438.80 atmosphere 1015.0 270 < th dose dependent rect. 3 1
332 438.87 precipitation 0.1 30 < th dose independent rect. 7 20
334 438.87 precipitation 0.1 30 < th dose dependent rect. 7 20
336 438.95 radiation 40.0 4320 > th dose dependent sin 11 NA
348 439.21 atmosphere 1015.0 30 < th dose independent rect. 7 20
349 439.21 radiation 40.0 30 < th dose dependent rect. 3 4
350 439.22 atmosphere 1015.0 270 < th dose dependent rect. 1 4
356 439.35 precipitation 0.1 270 < th dose independent rect. 1 4
357 439.35 precipitation 0.1 270 < th dose dependent rect. 1 4
393 439.81 temperature 10.0 1440 > th dose independent rect. 22 6
396 439.81 temperature 30.0 1440 < th dose independent rect. 22 6
400 439.81 humidity 50.0 1440 > th dose independent rect. 22 6
407 439.81 atmosphere 995.0 1440 > th dose independent rect. 22 6
408 439.81 radiation 1.0 1440 < th dose independent rect. 22 6
428 439.81 temperature 10.0 1440 > th dose independent rect. 4 18
431 439.81 radiation 1.0 1440 < th dose dependent rect. 22 6
444 439.95 atmosphere 995.0 30 > th dose independent rect. 7 20
451 440.19 temperature 10.0 30 > th dose independent rect. 3 4
453 440.19 temperature 30.0 30 < th dose independent rect. 3 4
454 440.19 humidity 50.0 30 > th dose independent rect. 3 4
457 440.19 atmosphere 995.0 30 > th dose independent rect. 3 4
458 440.19 atmosphere 1015.0 30 < th dose independent rect. 3 4
459 440.19 radiation 20.0 30 < th dose independent rect. 3 4
493 440.49 humidity 80.0 720 > th dose independent rect. 19 6
496 440.52 atmosphere 1015.0 90 < th dose dependent rect. 3 4
516 440.85 wind 9.0 30 < th dose independent rect. 7 20
538 441.22 humidity 80.0 270 > th dose independent rect. 21 3
568 441.52 humidity 50.0 270 > th dose dependent rect. 3 1
575 441.63 temperature 10.0 270 > th dose dependent rect. 3 1
584 441.87 radiation 40.0 270 < th dose independent rect. 20 14
595 442.13 wind 5.0 270 < th dose independent rect. 21 3
602 442.24 wind 1.0 43200 > th dose dependent rect. 3 2
603 442.25 temperature 25.0 14400 > th dose dependent rect. 22 2
604 442.26 wind 9.0 270 < th dose independent rect. 4 23
605 442.28 wind 5.0 270 < th dose independent rect. 24 6
612 442.43 humidity 50.0 30 > th dose dependent rect. 3 4
675 442.89 radiation 1.0 270 < th dose dependent rect. 1 4
679 442.96 atmosphere 1015.0 270 < th dose independent rect. 5 20
692 442.98 temperature 15.0 270 > th dose independent rect. 20 14
698 443.04 radiation 40.0 4320 > th dose independent rect. 8 2
723 443.10 radiation 1.0 270 < th dose independent rect. 1 4
732 443.13 temperature 10.0 270 > th dose independent rect. 1 4
735 443.13 humidity 50.0 270 > th dose independent rect. 1 4
738 443.13 atmosphere 995.0 270 > th dose independent rect. 1 4
739 443.13 atmosphere 1010.0 270 < th dose independent rect. 1 4
744 443.13 temperature 10.0 270 > th dose independent rect. 5 20
776 443.44 precipitation 0.1 270 < th dose independent rect. 24 6
777 443.44 precipitation 0.1 270 < th dose dependent rect. 24 6
778 443.46 precipitation 0.1 270 < th dose independent rect. 4 23
779 443.46 temperature 30.0 270 < th dose dependent rect. 24 5
780 443.46 precipitation 0.1 270 < th dose dependent rect. 4 23
785 443.48 wind 9.0 270 < th dose dependent rect. 1 4
806 443.80 wind 7.0 270 < th dose independent rect. 20 14
810 443.84 wind 9.0 270 < th dose independent rect. 5 20
823 443.97 atmosphere 1010.0 270 < th dose independent rect. 20 4
832 444.08 humidity 60.0 270 > th dose dependent rect. 21 3
837 444.11 radiation 40.0 4320 < th dose independent rect. 8 2
842 444.19 radiation 40.0 4320 > th dose independent sin 11 NA
869 444.30 atmosphere 1015.0 270 < th dose independent rect. 6 18
873 444.34 temperature 30.0 270 < th dose independent rect. 5 8
878 444.42 radiation 40.0 4320 > th dose dependent rect. 9 6
919 444.46 radiation 40.0 4320 < th dose independent rect. 22 12
969 444.57 radiation 40.0 4320 > th dose dependent no NA NA