BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0652200 Os06g0652200|AK108530
(195 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G30850.1 | chr4:15020540-15022278 REVERSE LENGTH=359 189 9e-49
AT2G24150.1 | chr2:10265632-10267345 REVERSE LENGTH=345 185 1e-47
AT5G20270.1 | chr5:6841025-6842656 REVERSE LENGTH=333 174 2e-44
AT4G37680.1 | chr4:17701231-17702568 FORWARD LENGTH=386 169 1e-42
AT4G38320.1 | chr4:17949078-17950383 FORWARD LENGTH=375 162 9e-41
AT2G40710.1 | chr2:16981087-16981368 REVERSE LENGTH=94 102 1e-22
AT4G38290.1 | chr4:17942871-17943909 FORWARD LENGTH=109 84 6e-17
>AT4G30850.1 | chr4:15020540-15022278 REVERSE LENGTH=359
Length = 358
Score = 189 bits (480), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 92/182 (50%), Positives = 119/182 (65%)
Query: 1 MTCLAVSATAHLLACHSRRFSRLFWQLDYAGIAVMIVASFFPPVYYAFLGRAVAQVAYLS 60
M CL S+ +HL ACHSRRF+ FW+LDYAGI++MIV SFF P+YYAF ++ YLS
Sbjct: 170 MGCLICSSMSHLFACHSRRFNLFFWRLDYAGISLMIVCSFFAPIYYAFSCHTYWRLFYLS 229
Query: 61 AITXXXXXXXXXXXXXXXXXXXXRHIRAGLFVSMGLSGVVPALHALWLNWGHPECYLALS 120
+I+ R RA LF++MG SGV+PA H L+L+ HP +AL
Sbjct: 230 SISILGLLAIFTLLSPSLSAPRFRSFRAALFLTMGFSGVIPATHVLYLHKDHPNVLIALV 289
Query: 121 LELVMGLVYAAGAGFYVARVPERWRPGAFDCVGHSHQIFHVLVLAGALTHYAATAILIDW 180
EL M ++YA GA FYV R+PERW+PGAFD GHSHQIFHV V+ GAL H A+ +++D+
Sbjct: 290 YELAMAVLYATGAAFYVTRIPERWKPGAFDIAGHSHQIFHVFVVLGALAHSVASLLIMDF 349
Query: 181 RE 182
R
Sbjct: 350 RR 351
>AT2G24150.1 | chr2:10265632-10267345 REVERSE LENGTH=345
Length = 344
Score = 185 bits (470), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 92/180 (51%), Positives = 116/180 (64%)
Query: 1 MTCLAVSATAHLLACHSRRFSRLFWQLDYAGIAVMIVASFFPPVYYAFLGRAVAQVAYLS 60
M CL S+ +HLLACHS+RF+ FW+LDYAGI++MIVASFF P+YYAF ++ YLS
Sbjct: 156 MGCLICSSVSHLLACHSKRFNVFFWRLDYAGISLMIVASFFAPIYYAFSCHPNFRLLYLS 215
Query: 61 AITXXXXXXXXXXXXXXXXXXXXRHIRAGLFVSMGLSGVVPALHALWLNWGHPECYLALS 120
+I+ R RA LF++MG S V+PA H L L W HP ++AL
Sbjct: 216 SISILGLLAIITLLSPALSTPRFRPFRANLFLAMGSSAVIPATHVLCLYWDHPNVFIALG 275
Query: 121 LELVMGLVYAAGAGFYVARVPERWRPGAFDCVGHSHQIFHVLVLAGALTHYAATAILIDW 180
E+ L Y GA FYV+RVPERW+PGAFD GHSHQIFHV V+ GAL H T ++ID+
Sbjct: 276 YEIATALSYFVGATFYVSRVPERWKPGAFDMAGHSHQIFHVFVVMGALAHCVTTLLIIDF 335
>AT5G20270.1 | chr5:6841025-6842656 REVERSE LENGTH=333
Length = 332
Score = 174 bits (442), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 88/182 (48%), Positives = 109/182 (59%)
Query: 1 MTCLAVSATAHLLACHSRRFSRLFWQLDYAGIAVMIVASFFPPVYYAFLGRAVAQVAYLS 60
M CL S+ HL CHS+ + ++DYAGI MI+ SFFPP++Y F YL+
Sbjct: 147 MFCLLASSICHLFCCHSKELNVFLLRIDYAGITAMIITSFFPPIFYIFQCTPRWYFIYLA 206
Query: 61 AITXXXXXXXXXXXXXXXXXXXXRHIRAGLFVSMGLSGVVPALHALWLNWGHPECYLALS 120
IT R RA LF SMGL G+VPA HAL +NWG+P+ + L
Sbjct: 207 GITSMGIFTIITLFTPSLSAPKYRAFRALLFASMGLFGIVPAAHALVVNWGNPQRNVTLV 266
Query: 121 LELVMGLVYAAGAGFYVARVPERWRPGAFDCVGHSHQIFHVLVLAGALTHYAATAILIDW 180
EL+M + Y G GFYV RVPER +PG FD VGHSHQIFHV VL GAL+HYAA + +DW
Sbjct: 267 YELLMAVFYLVGTGFYVGRVPERLKPGWFDRVGHSHQIFHVFVLLGALSHYAAALLFLDW 326
Query: 181 RE 182
R+
Sbjct: 327 RD 328
>AT4G37680.1 | chr4:17701231-17702568 FORWARD LENGTH=386
Length = 385
Score = 169 bits (427), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 85/182 (46%), Positives = 105/182 (57%)
Query: 1 MTCLAVSATAHLLACHSRRFSRLFWQLDYAGIAVMIVASFFPPVYYAFLGRAVAQVAYLS 60
M CL S+T HLL+CHS R S + +LDYAGIA +I SF+PPVYY+F+ YL
Sbjct: 200 MFCLLASSTCHLLSCHSERVSYIMLRLDYAGIAALIATSFYPPVYYSFMCDPFFCNLYLG 259
Query: 61 AITXXXXXXXXXXXXXXXXXXXXRHIRAGLFVSMGLSGVVPALHALWLNWGHPECYLALS 120
IT R +RA LF MG SG+ P LH L + W PE
Sbjct: 260 FITILGIATVLVSLLPVFQSPEFRVVRASLFFGMGFSGLAPILHKLIIFWDQPEALHTTG 319
Query: 121 LELVMGLVYAAGAGFYVARVPERWRPGAFDCVGHSHQIFHVLVLAGALTHYAATAILIDW 180
E++MGL+Y GA Y R+PERW PG FD GHSHQ+FHVLV+AGA THY A + + W
Sbjct: 320 YEILMGLLYGLGALVYATRIPERWMPGKFDIAGHSHQLFHVLVVAGAFTHYRAGLVYLKW 379
Query: 181 RE 182
R+
Sbjct: 380 RD 381
>AT4G38320.1 | chr4:17949078-17950383 FORWARD LENGTH=375
Length = 374
Score = 162 bits (410), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 83/171 (48%), Positives = 100/171 (58%)
Query: 3 CLAVSATAHLLACHSRRFSRLFWQLDYAGIAVMIVASFFPPVYYAFLGRAVAQVAYLSAI 62
CL S+T HLL+CHS R S + +LDYAGIA +I SF+PPVYY+F+ YL I
Sbjct: 202 CLLASSTCHLLSCHSERVSYIMLRLDYAGIAALIATSFYPPVYYSFMCDPFFCNLYLGFI 261
Query: 63 TXXXXXXXXXXXXXXXXXXXXRHIRAGLFVSMGLSGVVPALHALWLNWGHPECYLALSLE 122
T R +RA LF MG SG+ P LH L + W PE E
Sbjct: 262 TILGIATVLVSLLPVFQSLEFRVVRASLFFGMGFSGLAPILHKLIIFWDQPEALHMTGYE 321
Query: 123 LVMGLVYAAGAGFYVARVPERWRPGAFDCVGHSHQIFHVLVLAGALTHYAA 173
++MGL+Y GA Y R+PERW PG FD GHSHQ+FHVLV+AGALTHY A
Sbjct: 322 ILMGLLYGLGAVVYATRIPERWMPGKFDIAGHSHQLFHVLVVAGALTHYRA 372
>AT2G40710.1 | chr2:16981087-16981368 REVERSE LENGTH=94
Length = 93
Score = 102 bits (255), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 47/89 (52%), Positives = 58/89 (65%)
Query: 94 MGLSGVVPALHALWLNWGHPECYLALSLELVMGLVYAAGAGFYVARVPERWRPGAFDCVG 153
MG SG+ P LH L + W PE E++MGL+Y GA Y R+PERW PG FD G
Sbjct: 1 MGFSGLAPILHKLIIFWDQPEALHTTCYEILMGLLYGLGALVYATRIPERWMPGKFDIAG 60
Query: 154 HSHQIFHVLVLAGALTHYAATAILIDWRE 182
HSHQ+FHVLV+AGA THY A + + WR+
Sbjct: 61 HSHQLFHVLVVAGAFTHYRAGLVYLKWRD 89
>AT4G38290.1 | chr4:17942871-17943909 FORWARD LENGTH=109
Length = 108
Score = 83.6 bits (205), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 36/61 (59%), Positives = 45/61 (73%)
Query: 122 ELVMGLVYAAGAGFYVARVPERWRPGAFDCVGHSHQIFHVLVLAGALTHYAATAILIDWR 181
E++MGL+Y GA Y R+PERW PG FD GHSHQ+FHVLV+AGA THY A + + WR
Sbjct: 44 EILMGLLYGLGALVYATRIPERWMPGKFDIAGHSHQLFHVLVVAGAFTHYRAGLVYLKWR 103
Query: 182 E 182
+
Sbjct: 104 D 104
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.332 0.141 0.471
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,317,666
Number of extensions: 106572
Number of successful extensions: 336
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 331
Number of HSP's successfully gapped: 7
Length of query: 195
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 102
Effective length of database: 8,556,881
Effective search space: 872801862
Effective search space used: 872801862
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 109 (46.6 bits)