BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0646600 Os06g0646600|AB061818
(317 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0646600 KNOX family class 2 homeodomain protein 475 e-134
Os02g0182800 Similar to NTH23 protein 381 e-106
Os08g0292900 OSH45 protein 335 3e-92
Os03g0123500 Similar to HOS66 protein 322 2e-88
Os03g0771500 Knotted1-type homeobox protein OSH43 114 9e-26
Os01g0302500 Knotted1-type homeobox protein OSH6 112 5e-25
Os05g0129700 KNOX class homeodomain protein (Knotted1-type ... 110 1e-24
Os03g0673500 100 1e-21
Os03g0727000 Similar to Homeobox protein OSH1 95 7e-20
Os07g0129700 OSH15 protein (Homeobox gene) 94 2e-19
Os03g0727200 Similar to HOS13 protein (Fragment) 73 3e-13
Os03g0673000 Similar to Knotted1-type homeobox protein OSH1... 72 7e-13
>Os06g0646600 KNOX family class 2 homeodomain protein
Length = 317
Score = 475 bits (1222), Expect = e-134, Method: Compositional matrix adjust.
Identities = 242/317 (76%), Positives = 242/317 (76%)
Query: 1 MAFHYQDHXXXXXXXXXXXETXXXXXXXXXXXXXXXXXXXXXXWEREKAAIAAHPLYERL 60
MAFHYQDH ET WEREKAAIAAHPLYERL
Sbjct: 1 MAFHYQDHALAMDAAAAAAETGGHHHPGFVGAGGVVGGGGGGGWEREKAAIAAHPLYERL 60
Query: 61 LEAHVACLRVATPVDQLPRIDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEELDLFMTHY 120
LEAHVACLRVATPVDQLPRID EELDLFMTHY
Sbjct: 61 LEAHVACLRVATPVDQLPRIDAQIAARPPPLAAATAAAAAAAAGGAPSGGEELDLFMTHY 120
Query: 121 VLLLCSFKEQLQQHVRVHAMEAVMACWELEQTLQSLTGASPREGSGATMSDDEDNQVDSE 180
VLLLCSFKEQLQQHVRVHAMEAVMACWELEQTLQSLTGASPREGSGATMSDDEDNQVDSE
Sbjct: 121 VLLLCSFKEQLQQHVRVHAMEAVMACWELEQTLQSLTGASPREGSGATMSDDEDNQVDSE 180
Query: 181 SNMFDGNDGSDGMGFGPLMLTEGERSLVERVRQELKHELKQGYREKLVDIREEILRKRRA 240
SNMFDGNDGSDGMGFGPLMLTEGERSLVERVRQELKHELKQGYREKLVDIREEILRKRRA
Sbjct: 181 SNMFDGNDGSDGMGFGPLMLTEGERSLVERVRQELKHELKQGYREKLVDIREEILRKRRA 240
Query: 241 GKLPGDTASTLKAWWQAHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPA 300
GKLPGDTASTLKAWWQAHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPA
Sbjct: 241 GKLPGDTASTLKAWWQAHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPA 300
Query: 301 XXXXXXXXXXXXXVVDF 317
VVDF
Sbjct: 301 SSSSDKSKRKRYRVVDF 317
>Os02g0182800 Similar to NTH23 protein
Length = 212
Score = 381 bits (978), Expect = e-106, Method: Compositional matrix adjust.
Identities = 180/190 (94%), Positives = 186/190 (97%)
Query: 111 EELDLFMTHYVLLLCSFKEQLQQHVRVHAMEAVMACWELEQTLQSLTGASPREGSGATMS 170
EELDLFMTHYVLLLCSFKEQLQQHVRVHAMEAVM CWELEQ+LQSLTGASP EG+GATMS
Sbjct: 1 EELDLFMTHYVLLLCSFKEQLQQHVRVHAMEAVMGCWELEQSLQSLTGASPGEGTGATMS 60
Query: 171 DDEDNQVDSESNMFDGNDGSDGMGFGPLMLTEGERSLVERVRQELKHELKQGYREKLVDI 230
DDEDNQVDSE+NMFDGNDGSDGMGFGPLMLTEGERSLVERVR ELK+ELKQGY+EKLVDI
Sbjct: 61 DDEDNQVDSEANMFDGNDGSDGMGFGPLMLTEGERSLVERVRHELKNELKQGYKEKLVDI 120
Query: 231 REEILRKRRAGKLPGDTASTLKAWWQAHSKWPYPTEEDKARLVQETGLQLKQINNWFINQ 290
REEILRKRRAGKLPGDTAS LKAWWQAHSKWPYPTE+DKARLVQETGLQLKQINNWFINQ
Sbjct: 121 REEILRKRRAGKLPGDTASILKAWWQAHSKWPYPTEDDKARLVQETGLQLKQINNWFINQ 180
Query: 291 RKRNWHSNPA 300
RKRNWHSNPA
Sbjct: 181 RKRNWHSNPA 190
>Os08g0292900 OSH45 protein
Length = 194
Score = 335 bits (858), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 160/185 (86%), Positives = 173/185 (93%), Gaps = 3/185 (1%)
Query: 117 MTHYVLLLCSFKEQLQQHVRVHAMEAVMACWELEQTLQSLTGASPREGSGATMSDDEDNQ 176
MTHYVLLLCSFKEQLQQHVRVHAMEAVMACWELEQ LQSLTGASP EG+GATMSD ED+Q
Sbjct: 1 MTHYVLLLCSFKEQLQQHVRVHAMEAVMACWELEQNLQSLTGASPGEGTGATMSDGEDDQ 60
Query: 177 VDSESNMFDGN-DGSDGMGFGPLMLTEGERSLVERVRQELKHELKQGYREKLVDIREEIL 235
DSE+NM+D + DG+D MGFG + TE ERSL+ERVRQELKHELKQGY+EKL+DIREEIL
Sbjct: 61 ADSEANMYDPSLDGADNMGFG--LPTESERSLMERVRQELKHELKQGYKEKLIDIREEIL 118
Query: 236 RKRRAGKLPGDTASTLKAWWQAHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNW 295
RKRRAGKLPGDT STLKAWWQ+H+KWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNW
Sbjct: 119 RKRRAGKLPGDTTSTLKAWWQSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNW 178
Query: 296 HSNPA 300
HSNP+
Sbjct: 179 HSNPS 183
>Os03g0123500 Similar to HOS66 protein
Length = 287
Score = 322 bits (825), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 160/252 (63%), Positives = 187/252 (74%), Gaps = 4/252 (1%)
Query: 48 KAAIAAHPLYERLLEAHVACLRVATPVDQLPRIDXXXXXXXXXXXXXXXXXXXXXXXXXX 107
K IA HPL E+L+ AHV CLRVATP+D LP ID
Sbjct: 27 KGEIAVHPLCEQLVAAHVGCLRVATPIDHLPLIDAQLAQSSGLLHSYAAHHRPFLSPHDK 86
Query: 108 XXXEELDLFMTHYVLLLCSFKEQLQQHVRVHAMEAVMACWELEQTLQSLTGASPREGSGA 167
+ELD F+ Y++LLCSF+EQLQQHVRVHA+EAVMAC E+EQ+LQ LTGA+ EG+GA
Sbjct: 87 ---QELDSFLAQYMMLLCSFREQLQQHVRVHAVEAVMACREIEQSLQDLTGATLEEGTGA 143
Query: 168 TMSDDEDNQVDS-ESNMFDGNDGSDGMGFGPLMLTEGERSLVERVRQELKHELKQGYREK 226
TMS+DED E M G+DG D MGFGPLM T+ ERSL+ERVRQELK ELKQG++ +
Sbjct: 144 TMSEDEDETAPMLEGPMDMGSDGHDLMGFGPLMPTDSERSLMERVRQELKIELKQGFKSR 203
Query: 227 LVDIREEILRKRRAGKLPGDTASTLKAWWQAHSKWPYPTEEDKARLVQETGLQLKQINNW 286
+ D+REEILRKRRAGKLPGDT + LK WWQ HSKWPYPTE+DKA+LV+ETGLQLKQINNW
Sbjct: 204 IEDVREEILRKRRAGKLPGDTTTILKQWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNW 263
Query: 287 FINQRKRNWHSN 298
FINQRKRNWH+N
Sbjct: 264 FINQRKRNWHNN 275
>Os03g0771500 Knotted1-type homeobox protein OSH43
Length = 341
Score = 114 bits (285), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 78/252 (30%), Positives = 114/252 (45%), Gaps = 43/252 (17%)
Query: 48 KAAIAAHPLYERLLEAHVACLRVATPVDQLPRIDXXXXXXXXXXXXXXXXXXXXXXXXXX 107
KA I +HP Y LL A++ C +V P D L ++
Sbjct: 84 KAEIMSHPQYSALLAAYLGCKKVGAPPDVLTKL--TAVPAAQQLDEADGHPRRRHEPQRD 141
Query: 108 XXXEELDLFMTHYVLLLCSFKEQLQQHVRVHAMEAVMACWELEQTLQSLTGASPREGSGA 167
++LD FM Y +L ++E+L++ + +EA +E L SL S EG+G+
Sbjct: 142 DDPDQLDQFMDAYCSMLTRYREELERPI----LEAAEFFSRVETQLDSLA-ESNCEGTGS 196
Query: 168 TMSDDEDNQVDSESNMFDGNDGSDGMGFGPLMLTEGERSLVERVRQELKHELKQGYREKL 227
S++E + D ++LKH+L + Y L
Sbjct: 197 --SEEEQDPSD----------------------------------KQLKHQLLRKYGGSL 220
Query: 228 VDIREEILRKRRAGKLPGDTASTLKAWWQAHSKWPYPTEEDKARLVQETGLQLKQINNWF 287
D+R+ ++ + GKLP + L WW+ H KWPYP+E +K L Q TGL KQINNWF
Sbjct: 221 GDLRQVFSKRTKKGKLPKEARQKLLHWWELHYKWPYPSEMEKMTLAQTTGLDQKQINNWF 280
Query: 288 INQRKRNWHSNP 299
INQRKR+W P
Sbjct: 281 INQRKRHWKPTP 292
>Os01g0302500 Knotted1-type homeobox protein OSH6
Length = 301
Score = 112 bits (279), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 88/254 (34%), Positives = 115/254 (45%), Gaps = 34/254 (13%)
Query: 48 KAAIAAHPLYERLLEAHVACLRVATPVDQLPRIDXXXXXXXXXXXXXXXXXXXXXXXXXX 107
KA IA HP Y LL A++ C +V P P +
Sbjct: 44 KAQIAGHPRYPTLLSAYIECRKVGAP----PEV----ASLLKEIGRERRAGGGGGGAGQI 95
Query: 108 XXXEELDLFMTHYVLLLCSFKEQLQQHVRVHAMEAVMACWELEQTLQSL-TGASPREGSG 166
ELD FM Y +L +KE+L + EA ++ L +L +GA+ +
Sbjct: 96 GVDPELDEFMEAYCRVLVRYKEELSRPFD----EAASFLSSIQTQLSNLCSGATSPPATT 151
Query: 167 ATMSDD-----EDNQVDSESNMFDGNDGSDGMGFGPLMLTEGERSLVERVRQELKHELKQ 221
AT SD+ +++Q E++M D G+ ELK L +
Sbjct: 152 ATHSDEMVGSSDEDQCSGETDMLD----------------IGQEQSSRLADHELKEMLLK 195
Query: 222 GYREKLVDIREEILRKRRAGKLPGDTASTLKAWWQAHSKWPYPTEEDKARLVQETGLQLK 281
Y L +R E L+KR+ GKLP D S L WW H +WPYPTEEDK RL TGL K
Sbjct: 196 KYSGCLSRLRSEFLKKRKKGKLPKDARSALLEWWNTHYRWPYPTEEDKLRLAARTGLDPK 255
Query: 282 QINNWFINQRKRNW 295
QINNWFINQRKR+W
Sbjct: 256 QINNWFINQRKRHW 269
>Os05g0129700 KNOX class homeodomain protein (Knotted1-type homeobox protein
OSH71)
Length = 311
Score = 110 bits (275), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 90/248 (36%), Positives = 111/248 (44%), Gaps = 25/248 (10%)
Query: 48 KAAIAAHPLYERLLEAHVACLRVATPVDQLPRIDXXXXXXXXXXXXXXXXXXXXXXXXXX 107
KA IA HP Y LL A++ C +V P P +
Sbjct: 56 KAQIAGHPSYPSLLSAYIECRKVGAP----PEV---TTLLEEIGREGRGGGGGATAGGEI 108
Query: 108 XXXEELDLFMTHYVLLLCSFKEQLQQHVRVHAMEAVMACWELEQTLQSLTGASPREGSGA 167
ELD FM Y +L +KE+L + EA + L SL G +P
Sbjct: 109 GLDPELDEFMETYCRVLERYKEELTRPFD----EAASFLTGIHTQLASLCGGAPPP---- 160
Query: 168 TMSDDEDNQVDSESNMFDGNDGSDGMGFGPLMLTEGERSLVERVRQELKHELKQGYREKL 227
+D+ D V S + D +D FG E L + ELK L + Y L
Sbjct: 161 --TDNSDEMVGSSEDEPCSGD-ADAADFG----QEHSSRLAD---HELKEMLLKKYSGCL 210
Query: 228 VDIREEILRKRRAGKLPGDTASTLKAWWQAHSKWPYPTEEDKARLVQETGLQLKQINNWF 287
+R E L+KR+ GKLP D S L WW H +WPYPTEEDK RL TGL KQINNWF
Sbjct: 211 SRLRSEFLKKRKKGKLPKDARSALMDWWNTHYRWPYPTEEDKVRLAAMTGLDPKQINNWF 270
Query: 288 INQRKRNW 295
INQRKR+W
Sbjct: 271 INQRKRHW 278
>Os03g0673500
Length = 337
Score = 100 bits (249), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 77/256 (30%), Positives = 105/256 (41%), Gaps = 37/256 (14%)
Query: 48 KAAIAAHPLYERLLEAHVACLRVATPVDQLPRIDXXXXXXXXXXXXXXXXXXXXXXXXXX 107
KA I +HPLY LL A V C +V P + + R+
Sbjct: 72 KAKIMSHPLYPSLLRAFVDCKKVGAPPEVVGRLSSLAVVTDVPQYSGDRCLPAQQPAAD- 130
Query: 108 XXXEELDLFMTHYVLLLCSFKEQLQQHVRVHAMEAVMACWELEQTLQSLTGASPREGSGA 167
ELD FM Y +L + ++L + ++ EA +E+ + SL
Sbjct: 131 ---PELDQFMETYCYMLTRYGQELARPIQ----EAEEFFRGIEEQIDSL----------- 172
Query: 168 TMSDDEDNQVDSESNMFDGNDGSDGMGFGPLMLTEGERSLVER-VRQELKHELKQGYREK 226
+ DED D E + G L E + E V + L Y
Sbjct: 173 --ALDEDVSYDYEDEVAGG-------------LPEKSAAFGENEVTTTTRRHLMNKYSGY 217
Query: 227 LVDIREEILRKRR--AGKLPGDTASTLKAWWQAHSKWPYPTEEDKARLVQETGLQLKQIN 284
L + EI K++ G LP D L WW H +WPYP+E +KA L + TGL KQ+
Sbjct: 218 LNSLWTEISNKKKNSTGHLPRDARHKLLQWWHLHYRWPYPSEAEKAALAESTGLDKKQVT 277
Query: 285 NWFINQRKRNWHSNPA 300
NWFINQRKR+W PA
Sbjct: 278 NWFINQRKRHWKPKPA 293
>Os03g0727000 Similar to Homeobox protein OSH1
Length = 269
Score = 95.1 bits (235), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 69/186 (37%), Positives = 98/186 (52%), Gaps = 26/186 (13%)
Query: 112 ELDLFMTHYVLLLCSFKEQLQQHVRVHAMEAVMACWELEQTLQSLTGASPRE--GSGATM 169
ELD FM Y +L ++E+L + ++ AME + E + S++G S R SG++
Sbjct: 70 ELDQFMEAYHEMLVKYREELTRPLQ-EAMEFLRRV-ETQLNTLSISGRSLRNILSSGSSE 127
Query: 170 SDDEDNQVDSESNMFDGNDGSDGMGFGPLMLTEGERSLVERVRQELKHELKQGYREKLVD 229
D E + ++E D + V QELKH L + Y L
Sbjct: 128 EDQEGSGGETELPEIDAHG----------------------VDQELKHHLLKKYSGYLSS 165
Query: 230 IREEILRKRRAGKLPGDTASTLKAWWQAHSKWPYPTEEDKARLVQETGLQLKQINNWFIN 289
+++E+ +K++ GKLP D L WW+ H KWPYP+E K L + TGL LKQINNWFIN
Sbjct: 166 LKQELSKKKKKGKLPKDARQQLLNWWELHYKWPYPSESQKVALAESTGLDLKQINNWFIN 225
Query: 290 QRKRNW 295
QRKR+W
Sbjct: 226 QRKRHW 231
>Os07g0129700 OSH15 protein (Homeobox gene)
Length = 355
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 79/251 (31%), Positives = 111/251 (44%), Gaps = 22/251 (8%)
Query: 45 EREKAAIAAHPLYERLLEAHVACLRVATPVDQLPRIDXXXXXXXXXXXXXXXXXXXXXXX 104
E KA I AHP Y LL A++ C +V P + L R+
Sbjct: 89 ESIKAKIMAHPQYSALLAAYLDCQKVGAPPEVLERL-----------TATAAKLDARPPG 137
Query: 105 XXXXXXEELDLFMTHYVLLLCSFKEQLQQHVRVHAMEAVMACWELEQTLQSLTGASPREG 164
ELD FM Y +L ++E+L + + AME + T+
Sbjct: 138 RHDARDPELDQFMEAYCNMLAKYREELTRPID-EAMEFLKRVESQLDTIAGGAHGGGAGS 196
Query: 165 SGATMSDDEDNQVDSESNMFDGNDGSDGMGFGPLMLTEGERSLVERVRQELKHELKQGYR 224
+ ++D + V S D D S P + E +ELK +L + Y
Sbjct: 197 ARLLLADGKSECVGSSE---DDMDPSGRENEPPEIDPRAED-------KELKFQLLKKYS 246
Query: 225 EKLVDIREEILRKRRAGKLPGDTASTLKAWWQAHSKWPYPTEEDKARLVQETGLQLKQIN 284
L +R+E +K++ GKLP + L WW+ H KWPYP+E +K L + TGL KQIN
Sbjct: 247 GYLSSLRQEFSKKKKKGKLPKEARQKLLHWWELHYKWPYPSETEKIALAESTGLDQKQIN 306
Query: 285 NWFINQRKRNW 295
NWFINQRKR+W
Sbjct: 307 NWFINQRKRHW 317
>Os03g0727200 Similar to HOS13 protein (Fragment)
Length = 365
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 75/253 (29%), Positives = 109/253 (43%), Gaps = 23/253 (9%)
Query: 48 KAAIAAHPLYERLLEAHVACLRVATPVDQLPRIDXXXXXXXXXXXXXXXXXXXXXXXXXX 107
KA I +HP Y RLL A + C +V P +
Sbjct: 74 KARIVSHPRYHRLLAAFLDCHKVGCPAEA----AEEIAAAARVREARQRAAAAASRMPPA 129
Query: 108 XXXEELDLFMTHYVLLLCSFKEQLQQHVRVHAMEAVMACWELEQTLQSLTGASPREGSGA 167
EL L Y LL KE+L + ++ EA +E L S+ P A
Sbjct: 130 PEDPELKLVTEDYCKLLVECKEELSRPLQ----EAEEFLRTVESELNSINSGPPLT---A 182
Query: 168 TMSDDEDNQVDSESNMFDGNDGSDGMGFGPLMLTEGERSLVERVR-----QELKHELKQG 222
+S+ S++ + +D G G M+ E + + + LK L +
Sbjct: 183 LISE-------SKAGLDSSDDDEHEDGSGMEMMEAAEDEDLGIIDPRSDDKALKRHLLRK 235
Query: 223 YREKLVDIREEILRKRRAGKLPGDTASTLKAWWQAHSKWPYPTEEDKARLVQETGLQLKQ 282
Y L +R+E+ +KR+ GKLP + L WW+ H +WP P+E +K L + TGL+ KQ
Sbjct: 236 YSGYLGGLRKELSKKRKKGKLPKEARQKLLTWWELHYRWPNPSEMEKIALAESTGLEQKQ 295
Query: 283 INNWFINQRKRNW 295
INN FINQRKR+W
Sbjct: 296 INNCFINQRKRHW 308
>Os03g0673000 Similar to Knotted1-type homeobox protein OSH10 (Fragment)
Length = 77
Score = 71.6 bits (174), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 48/77 (62%)
Query: 214 ELKHELKQGYREKLVDIREEILRKRRAGKLPGDTASTLKAWWQAHSKWPYPTEEDKARLV 273
ELK L Y L + E+ +K++ GKLP D L WWQ H +WPYP+E +KA L
Sbjct: 1 ELKSHLLNKYSGYLSSLWRELSKKKKKGKLPRDARQKLLHWWQLHYRWPYPSELEKAALA 60
Query: 274 QETGLQLKQINNWFINQ 290
+ TGL KQINNWFINQ
Sbjct: 61 ESTGLDAKQINNWFINQ 77
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.132 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,695,593
Number of extensions: 351962
Number of successful extensions: 1493
Number of sequences better than 1.0e-10: 12
Number of HSP's gapped: 1482
Number of HSP's successfully gapped: 12
Length of query: 317
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 216
Effective length of database: 11,762,187
Effective search space: 2540632392
Effective search space used: 2540632392
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 156 (64.7 bits)