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Os06g0646600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : KNOX family class 2 homeodomain protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 15.9 (0.0195) R2 : 0.651
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.49 (0.051) R2dC : 0.654 R2C : 0.65
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.034 (0.041) R2dN8 : 0.000682 R2N8 : -0.00283
σ : 0.367
deviance : 61.64
__
_____
C
peak time of C : 17.7
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
41.34 0.302 15.8 -0.632 0.104 -1.82 1.36 -0.889 -0.083 0.962 0.2591 693 -- --
41.35 0.299 15.9 -0.677 0.0964 -1.76 1.21 -- -0.0881 22.9 2.08e-08 693 -- --
45.91 0.318 15.9 -0.556 1.49 0.111 -- 1.08 -0.0298 17.4 0.2591 693 -- --
47.83 0.322 15.9 -0.718 0.0901 -1.77 -- -- -0.0947 23.3 0.02 689 -- --
160.58 0.593 15.8 -0.607 -- 0.0567 -- 1.02 -0.0673 -- 0.2591 693 -- --
53.44 0.343 15.9 -0.535 1.48 -- 0.511 -- -0.0283 17.8 -- -- -- --
54.01 0.344 15.9 -0.538 1.48 -- -- -- -0.0259 17.7 -- -- -- --
48.06 0.323 15.9 -0.732 -- -1.82 -- -- -0.0981 -- 0.004258 706 -- --
60.7 0.365 15.8 -- 1.5 0.202 -- -- 0.0383 17.1 0.3522 685 -- --
167.68 0.605 15.8 -0.585 -- -- -- -- -0.061 -- -- -- -- --
61.64 0.367 15.9 -- 1.49 -- -- -- 0.034 17.7 -- -- -- --
61.84 0.366 15.8 -- -- -1.75 -- -- -0.0286 -- 0.3501 701 -- --
176.69 0.62 15.8 -- -- -- -- -- 0.00385 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 36.80 temperature 10.0 270 > th dose dependent rect. 22 16
7 37.68 precipitation 0.1 270 < th dose independent rect. 2 9
8 37.68 precipitation 0.1 270 < th dose dependent rect. 2 9
11 37.83 temperature 10.0 270 > th dose dependent rect. 21 6
12 37.93 temperature 20.0 270 > th dose independent rect. 22 17
14 37.99 temperature 10.0 90 > th dose dependent rect. 23 5
15 38.01 precipitation 0.1 270 < th dose independent rect. 11 15
16 38.01 precipitation 0.1 270 < th dose dependent rect. 11 15
18 38.11 temperature 10.0 270 > th dose dependent rect. 7 9
22 38.23 temperature 10.0 270 > th dose independent rect. 2 9
23 38.23 atmosphere 995.0 270 > th dose independent rect. 2 9
24 38.23 atmosphere 1015.0 270 < th dose independent rect. 2 9
25 38.23 temperature 10.0 270 > th dose independent rect. 11 15
26 38.25 humidity 50.0 270 > th dose independent rect. 2 9
28 38.33 wind 9.0 270 < th dose independent rect. 2 9
29 38.34 wind 9.0 270 < th dose independent rect. 11 15
38 38.52 temperature 15.0 270 > th dose independent rect. 7 10
43 38.66 radiation 10.0 10 < th dose dependent sin 9 NA
45 38.69 temperature 15.0 270 > th dose independent rect. 3 18
51 38.83 precipitation 0.1 270 < th dose independent rect. 21 6
53 38.83 precipitation 0.1 270 < th dose dependent rect. 21 6
57 38.90 radiation 1.0 10 > th dose independent sin 6 NA
59 38.95 wind 5.0 270 < th dose independent rect. 23 2
60 38.98 wind 5.0 270 < th dose independent rect. 21 6
61 38.98 temperature 10.0 10 > th dose dependent rect. 23 6
72 39.02 precipitation 0.1 270 < th dose independent rect. 3 18
73 39.02 precipitation 0.1 270 < th dose dependent rect. 3 18
74 39.03 temperature 30.0 270 < th dose independent rect. 2 8
76 39.03 temperature 10.0 270 > th dose dependent rect. 23 2
78 39.08 radiation 1.0 30 < th dose independent rect. 23 9
88 39.10 wind 9.0 270 < th dose independent rect. 3 18
89 39.10 radiation 1.0 270 < th dose dependent rect. 21 6
91 39.11 temperature 10.0 270 > th dose independent rect. 21 6
92 39.11 temperature 30.0 270 < th dose independent rect. 21 6
93 39.11 humidity 50.0 270 > th dose independent rect. 21 6
96 39.11 atmosphere 995.0 270 > th dose independent rect. 21 6
97 39.11 radiation 1.0 270 < th dose independent rect. 21 6
108 39.13 wind 9.0 270 < th dose independent rect. 21 6
116 39.18 radiation 1.0 30 < th dose independent sin 8 NA
122 39.24 wind 5.0 90 < th dose independent rect. 23 5
123 39.24 wind 9.0 270 < th dose dependent rect. 2 9
139 39.30 radiation 10.0 10 < th dose dependent rect. 23 12
141 39.31 radiation 1.0 30 < th dose dependent rect. 23 17
145 39.32 radiation 1.0 30 < th dose dependent rect. 23 9
164 39.42 wind 9.0 90 < th dose independent rect. 23 5
165 39.42 temperature 10.0 90 > th dose independent rect. 23 5
166 39.42 temperature 30.0 90 < th dose independent rect. 23 5
167 39.42 humidity 50.0 90 > th dose independent rect. 23 5
170 39.42 atmosphere 995.0 90 > th dose independent rect. 23 5
171 39.42 radiation 1.0 90 < th dose independent rect. 23 5
178 39.42 radiation 1.0 90 < th dose dependent rect. 23 5
204 39.54 radiation 40.0 270 < th dose independent rect. 2 8
206 39.55 wind 7.0 270 < th dose independent rect. 17 14
223 39.59 temperature 15.0 270 > th dose independent rect. 4 16
224 39.59 temperature 15.0 270 > th dose independent rect. 1 22
228 39.61 atmosphere 1015.0 270 < th dose independent rect. 3 18
229 39.61 wind 9.0 90 < th dose dependent rect. 23 5
240 39.69 precipitation 0.1 90 < th dose independent rect. 23 5
241 39.69 precipitation 0.1 90 < th dose dependent rect. 23 5
245 39.71 wind 9.0 270 < th dose dependent rect. 23 2
246 39.72 temperature 15.0 90 > th dose independent rect. 4 7
247 39.72 temperature 10.0 270 > th dose dependent sin 6 NA
261 39.77 atmosphere 1015.0 90 < th dose independent rect. 23 5
281 39.80 precipitation 0.1 90 < th dose independent rect. 4 7
284 39.80 precipitation 0.1 90 < th dose dependent rect. 4 7
288 39.82 humidity 50.0 90 > th dose dependent rect. 23 5
295 39.86 atmosphere 995.0 270 > th dose independent rect. 11 15
316 39.94 atmosphere 995.0 90 > th dose independent rect. 4 7
317 39.94 atmosphere 1015.0 90 < th dose independent rect. 4 7
328 39.98 temperature 10.0 270 > th dose independent rect. 20 8
329 39.98 temperature 30.0 270 < th dose independent rect. 20 8
330 39.98 humidity 50.0 270 > th dose independent rect. 20 8
333 39.98 atmosphere 995.0 270 > th dose independent rect. 20 8
334 39.98 radiation 1.0 270 < th dose independent rect. 20 8
341 39.98 atmosphere 1015.0 270 < th dose independent rect. 4 16
342 39.98 wind 9.0 270 < th dose dependent rect. 21 6
343 39.98 radiation 1.0 270 < th dose dependent rect. 20 8
348 39.99 precipitation 0.1 270 < th dose independent rect. 23 2
349 39.99 wind 9.0 270 < th dose independent rect. 4 16
350 39.99 precipitation 0.1 270 < th dose dependent rect. 23 2
355 40.00 radiation 1.0 10 > th dose independent rect. 5 7
373 40.01 wind 9.0 270 < th dose independent rect. 20 8
374 40.01 atmosphere 1015.0 270 < th dose independent rect. 11 15
378 40.02 wind 9.0 270 < th dose independent rect. 1 22
380 40.03 atmosphere 1015.0 270 < th dose independent rect. 21 6
387 40.06 wind 9.0 90 < th dose independent rect. 4 7
401 40.08 wind 9.0 270 < th dose independent rect. 7 9
407 40.09 temperature 10.0 270 > th dose independent rect. 23 2
408 40.09 temperature 30.0 270 < th dose independent rect. 23 2
409 40.09 humidity 50.0 270 > th dose independent rect. 23 2
412 40.09 atmosphere 995.0 270 > th dose independent rect. 23 2
413 40.09 radiation 1.0 270 < th dose independent rect. 23 2
419 40.09 temperature 15.0 270 > th dose independent rect. 2 20
421 40.09 radiation 1.0 270 < th dose dependent rect. 23 2
442 40.10 radiation 20.0 270 < th dose independent rect. 16 15
469 40.13 radiation 40.0 270 < th dose dependent rect. 16 15
470 40.14 humidity 50.0 270 > th dose independent rect. 16 15
532 40.21 atmosphere 1015.0 270 < th dose independent rect. 7 10
533 40.21 temperature 10.0 270 > th dose independent rect. 17 14
534 40.21 radiation 40.0 270 < th dose independent rect. 17 14
540 40.22 precipitation 0.1 270 < th dose independent rect. 7 10
544 40.22 precipitation 0.1 270 < th dose dependent rect. 7 10
546 40.23 wind 9.0 10 < th dose independent rect. 23 6
547 40.23 temperature 10.0 10 > th dose independent rect. 23 6
548 40.23 temperature 30.0 10 < th dose independent rect. 23 6
549 40.23 humidity 50.0 10 > th dose independent rect. 23 6
552 40.23 atmosphere 995.0 10 > th dose independent rect. 23 6
558 40.23 wind 9.0 10 < th dose independent rect. 5 18
559 40.23 temperature 10.0 10 > th dose independent rect. 5 18
561 40.23 atmosphere 1015.0 10 < th dose independent rect. 5 18
570 40.24 temperature 10.0 270 > th dose dependent rect. 9 16
603 40.30 radiation 20.0 14400 < th dose independent rect. 24 6
608 40.31 precipitation 0.1 10 < th dose independent rect. 5 7
612 40.31 precipitation 0.1 10 < th dose dependent rect. 5 7
638 40.34 humidity 50.0 270 > th dose dependent rect. 21 6
661 40.37 humidity 50.0 90 > th dose independent rect. 4 7
672 40.37 wind 9.0 10 < th dose dependent rect. 5 7
682 40.38 wind 9.0 270 < th dose dependent rect. 3 17
703 40.39 precipitation 0.1 10 < th dose independent rect. 5 18
707 40.39 temperature 30.0 270 < th dose dependent rect. 15 18
708 40.39 precipitation 0.1 10 < th dose dependent rect. 5 18
710 40.40 atmosphere 1015.0 10 < th dose independent rect. 23 6
721 40.42 temperature 10.0 10 > th dose independent rect. 5 7
723 40.42 atmosphere 995.0 10 > th dose independent rect. 5 7
724 40.42 atmosphere 1015.0 10 < th dose independent rect. 5 7
725 40.42 radiation 1.0 270 > th dose independent rect. 7 9
726 40.42 temperature 10.0 10 > th dose independent rect. 12 17
731 40.43 atmosphere 995.0 270 > th dose independent rect. 7 9
734 40.44 atmosphere 1015.0 270 < th dose independent rect. 23 2
736 40.44 wind 9.0 10 < th dose independent rect. 5 7
739 40.45 wind 9.0 10 < th dose independent rect. 12 17
823 40.52 temperature 20.0 10 > th dose independent rect. 23 18
868 40.54 precipitation 0.1 270 < th dose independent rect. 16 15
877 40.54 precipitation 0.1 270 < th dose dependent rect. 16 15
886 40.55 atmosphere 995.0 270 > th dose independent rect. 17 14
889 40.55 temperature 10.0 10 > th dose dependent rect. 8 10
903 40.59 atmosphere 995.0 270 > th dose independent rect. 3 18
926 40.62 humidity 50.0 270 > th dose dependent rect. 23 2
985 40.70 humidity 50.0 10 > th dose dependent rect. 23 6