Os05g0129700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : KNOX class homeodomain protein (Knotted1-type homeobox protein OSH71).
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Os05g0129700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : KNOX class homeodomain protein (Knotted1-type homeobox protein OSH71).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = precipitation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 165.62 | 0.605 | 3.07 | -0.016 | 0.0854 | -0.456 | -0.153 | -1.86 | 0.0397 | 8.59 | 0.4998 | 1135 | -- | -- |
| 165.64 | 0.599 | 3.11 | -0.0528 | 0.0873 | -0.944 | -0.188 | -- | 0.0077 | 7.71 | 0.4718 | 874 | -- | -- |
| 165.69 | 0.6 | 3.07 | -0.0145 | 0.0866 | -0.45 | -- | -1.83 | 0.0409 | 8.46 | 0.4999 | 1129 | -- | -- |
| 165.28 | 0.599 | 3.09 | -0.0473 | 0.0926 | -1.07 | -- | -- | 0.0485 | 9.03 | 0.268 | 863 | -- | -- |
| 166.1 | 0.6 | 3.07 | -0.0208 | -- | -0.444 | -- | -1.87 | 0.0407 | -- | 0.5 | 1129 | -- | -- |
| 173.19 | 0.617 | 3.1 | 0.106 | 0.0912 | -- | -0.113 | -- | 0.0124 | 8.37 | -- | -- | -- | -- |
| 173.22 | 0.616 | 3.1 | 0.102 | 0.093 | -- | -- | -- | 0.0122 | 7.94 | -- | -- | -- | -- |
| 165.79 | 0.6 | 3.09 | -0.0424 | -- | -1.08 | -- | -- | 0.048 | -- | 0.1715 | 863 | -- | -- |
| 165.33 | 0.599 | 3.09 | -- | 0.0944 | -1.06 | -- | -- | 0.0516 | 9.09 | 0.2783 | 863 | -- | -- |
| 173.69 | 0.616 | 3.1 | 0.103 | -- | -- | -- | -- | 0.0134 | -- | -- | -- | -- | -- |
| 173.5 | 0.616 | 3.1 | -- | 0.0937 | -- | -- | -- | 0.000776 | 7.86 | -- | -- | -- | -- |
| 165.84 | 0.6 | 3.09 | -- | -- | -1.06 | -- | -- | 0.0517 | -- | 0.09464 | 863 | -- | -- |
| 173.97 | 0.616 | 3.1 | -- | -- | -- | -- | -- | 0.00193 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 156.89 | wind | 3.0 | 90 | > th | dose independent | rect. | 1 | 3 |
| 3 | 157.32 | wind | 3.0 | 90 | > th | dose dependent | rect. | 1 | 3 |
| 7 | 159.11 | wind | 3.0 | 90 | > th | dose independent | rect. | 1 | 6 |
| 35 | 160.99 | temperature | 20.0 | 90 | < th | dose dependent | rect. | 2 | 1 |
| 36 | 161.01 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 4 | 1 |
| 42 | 161.24 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 3 | 19 |
| 49 | 161.52 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 3 | 16 |
| 62 | 161.69 | wind | 3.0 | 10 | > th | dose independent | rect. | 2 | 3 |
| 70 | 161.78 | wind | 3.0 | 90 | > th | dose independent | rect. | 3 | 1 |
| 85 | 161.99 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 22 | 1 |
| 86 | 161.99 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 22 | 1 |
| 92 | 162.22 | wind | 5.0 | 90 | > th | dose dependent | rect. | 3 | 1 |
| 95 | 162.29 | wind | 5.0 | 90 | > th | dose independent | rect. | 24 | 1 |
| 100 | 162.33 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 22 | 6 |
| 141 | 162.60 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 3 | 9 |
| 154 | 162.76 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 21 | 14 |
| 159 | 162.80 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 21 | 7 |
| 170 | 162.89 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 187 | 163.12 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 24 | 22 |
| 196 | 163.20 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 15 | 14 |
| 200 | 163.22 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 15 | 4 |
| 202 | 163.24 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 15 | 9 |
| 217 | 163.33 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 19 | 1 |
| 218 | 163.35 | temperature | 20.0 | 90 | < th | dose independent | rect. | 2 | 1 |
| 221 | 163.37 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 15 | 14 |
| 224 | 163.39 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 15 | 14 |
| 226 | 163.39 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 21 | 14 |
| 229 | 163.40 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 24 | 19 |
| 231 | 163.44 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 15 | 4 |
| 239 | 163.44 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 21 | 10 |
| 249 | 163.48 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 15 | 4 |
| 253 | 163.49 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 15 | 9 |
| 285 | 163.52 | wind | 5.0 | 90 | > th | dose dependent | rect. | 21 | 9 |
| 310 | 163.64 | wind | 5.0 | 90 | > th | dose independent | rect. | 21 | 9 |
| 336 | 163.76 | atmosphere | 1005.0 | 10 | < th | dose independent | rect. | 3 | 1 |
| 346 | 163.76 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 21 | 10 |
| 388 | 163.86 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 20 | 8 |
| 391 | 163.86 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 20 | 8 |
| 417 | 163.96 | humidity | 90.0 | 1440 | < th | dose independent | rect. | 16 | 2 |
| 419 | 163.96 | humidity | 60.0 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 434 | 164.01 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 20 | 8 |
| 436 | 164.02 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 15 | 9 |
| 437 | 164.02 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 15 | 9 |
| 441 | 164.07 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 15 | 9 |
| 444 | 164.09 | radiation | 1.0 | 1440 | > th | dose independent | sin | 16 | NA |
| 456 | 164.14 | radiation | 1.0 | 1440 | < th | dose independent | sin | 15 | NA |
| 457 | 164.14 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 17 | 7 |
| 495 | 164.23 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 12 | 12 |
| 498 | 164.23 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 12 | 12 |
| 537 | 164.32 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 20 | 2 |
| 540 | 164.32 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 20 | 2 |
| 541 | 164.33 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 20 | 2 |
| 545 | 164.33 | radiation | 10.0 | 1440 | < th | dose dependent | sin | 15 | NA |
| 546 | 164.33 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 550 | 164.34 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 18 | 6 |
| 554 | 164.35 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 20 | 8 |
| 607 | 164.47 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 20 | 3 |
| 617 | 164.48 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 24 | 12 |
| 622 | 164.49 | humidity | 90.0 | 1440 | < th | dose independent | rect. | 10 | 14 |
| 686 | 164.57 | humidity | 90.0 | 1440 | < th | dose independent | rect. | 13 | 11 |
| 726 | 164.62 | temperature | 20.0 | 720 | < th | dose dependent | rect. | 16 | 2 |
| 789 | 164.67 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 17 | 11 |
| 836 | 164.72 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 19 | 3 |
| 863 | 164.76 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 17 | 11 |
| 865 | 164.76 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 17 | 11 |
| 871 | 164.77 | temperature | 20.0 | 10 | < th | dose dependent | sin | 4 | NA |
| 877 | 164.78 | wind | 5.0 | 90 | > th | dose independent | rect. | 21 | 5 |
| 881 | 164.78 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 20 | 20 |
| 888 | 164.78 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 20 | 20 |
| 895 | 164.81 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 20 | 20 |
| 901 | 164.82 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 19 | 1 |
| 937 | 164.87 | precipitation | 0.1 | 1440 | > th | dose independent | sin | 16 | NA |
| 938 | 164.87 | precipitation | 0.1 | 1440 | < th | dose independent | sin | 16 | NA |
| 940 | 164.87 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 20 | 18 |
| 942 | 164.87 | precipitation | 0.1 | 1440 | < th | dose dependent | sin | 16 | NA |
| 945 | 164.88 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 955 | 164.90 | humidity | 60.0 | 90 | < th | dose dependent | rect. | 9 | 1 |
| 989 | 164.93 | humidity | 90.0 | 4320 | > th | dose independent | rect. | 17 | 1 |