BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0610100 Os06g0610100|Os06g0610100
(192 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0610100 Similar to Storage protein precursor 188 2e-48
Os08g0470200 Similar to Nectarin III 87 5e-18
Os08g0423600 86 2e-17
Os08g0423500 Carbonic anhydrase, eukaryotic family protein 86 2e-17
Os08g0470700 Carbonic anhydrase, eukaryotic family protein 79 2e-15
Os08g0424100 Carbonic anhydrase, eukaryotic family protein 77 7e-15
Os12g0153500 Carbonic anhydrase, eukaryotic family protein 69 1e-12
Os09g0454500 Carbonic anhydrase, eukaryotic family protein 65 3e-11
>Os06g0610100 Similar to Storage protein precursor
Length = 192
Score = 188 bits (477), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 104/192 (54%), Positives = 104/192 (54%)
Query: 1 MHAPSNTNXXXXXXXXXXXXXXXXXXXXIRHARAQQETGWXXXXXXXXXXXXXXXXXXXX 60
MHAPSNTN IRHARAQQETGW
Sbjct: 1 MHAPSNTNGAVVFLAAAVSFLLLLLLGSIRHARAQQETGWSSATVAATTTGRSGGGTSGG 60
Query: 61 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVNRGHDIMVRFXXXXXXXXXXX 120
LVNRGHDIMVRF
Sbjct: 61 IGPPAPSASAAANPPSASPRPPPSPPAAAAATTAAASLVNRGHDIMVRFDGDAGGVVVDG 120
Query: 121 ETYALRQMHWHSPSEHAVDGRRYDLELHMLHQSETRDGRYAVVAQLFDIGHRRDATLDMV 180
ETYALRQMHWHSPSEHAVDGRRYDLELHMLHQSETRDGRYAVVAQLFDIGHRRDATLDMV
Sbjct: 121 ETYALRQMHWHSPSEHAVDGRRYDLELHMLHQSETRDGRYAVVAQLFDIGHRRDATLDMV 180
Query: 181 ITLCSTSSTIYT 192
ITLCSTSSTIYT
Sbjct: 181 ITLCSTSSTIYT 192
>Os08g0470200 Similar to Nectarin III
Length = 218
Score = 87.4 bits (215), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 39/73 (53%), Positives = 52/73 (71%), Gaps = 2/73 (2%)
Query: 98 LVNRGHDIMVRFXXXXXXXXXXXETYALRQMHWHSPSEHAVDGRRYDLELHMLHQSETRD 157
+VNRGHDIMVRF Y LRQ+HWHSP+EH+VDGRRYD+ELHM+H+S +
Sbjct: 95 IVNRGHDIMVRFDGDAGSVVINGTAYYLRQLHWHSPTEHSVDGRRYDMELHMVHESAEK- 153
Query: 158 GRYAVVAQLFDIG 170
+ AV+ L+++G
Sbjct: 154 -KAAVIGLLYEVG 165
>Os08g0423600
Length = 276
Score = 85.9 bits (211), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/80 (51%), Positives = 50/80 (62%), Gaps = 2/80 (2%)
Query: 98 LVNRGHDIMVRFXXXXXXXXXXXETYALRQMHWHSPSEHAVDGRRYDLELHMLHQSETRD 157
+VNRGHDIMVRF Y LRQMHWH+PSEH +DGRRYD+ELHM+H +
Sbjct: 94 VVNRGHDIMVRFDGDAGSLKINGTAYQLRQMHWHTPSEHTIDGRRYDMELHMVHLNAQN- 152
Query: 158 GRYAVVAQLFDIGHRRDATL 177
+ AV+ L+ IG D L
Sbjct: 153 -QAAVIGILYTIGTTPDEFL 171
>Os08g0423500 Carbonic anhydrase, eukaryotic family protein
Length = 276
Score = 85.9 bits (211), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 40/75 (53%), Positives = 49/75 (65%), Gaps = 2/75 (2%)
Query: 98 LVNRGHDIMVRFXXXXXXXXXXXETYALRQMHWHSPSEHAVDGRRYDLELHMLHQSETRD 157
+VNRGHDIMVRF Y LRQMHWH+PSEH +DGRRYD+ELHM+H +
Sbjct: 95 VVNRGHDIMVRFDGDAGSLKINGTAYQLRQMHWHTPSEHTIDGRRYDMELHMVHLNAQN- 153
Query: 158 GRYAVVAQLFDIGHR 172
+ AV+ L+ IG R
Sbjct: 154 -QAAVIGILYTIGTR 167
>Os08g0470700 Carbonic anhydrase, eukaryotic family protein
Length = 194
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 55/88 (62%), Gaps = 3/88 (3%)
Query: 98 LVNRGHDIMVRFXXXXXXXXXXXETYALRQMHWHSPSEHAVDGRRYDLELHMLHQSETRD 157
+VNRGHDI V+F + Y L+Q+HWH+PSEH V+GRRYD+ELH++H + +
Sbjct: 92 MVNRGHDIEVKFMGNAGRVVINGKAYKLKQLHWHTPSEHTVNGRRYDMELHLVH--DDGN 149
Query: 158 GRYAVVAQLFDIGHRRDATLDMVITLCS 185
AV+ L+ IG+ D L MV + +
Sbjct: 150 SNTAVIGNLYQIGN-PDPFLLMVCLIST 176
>Os08g0424100 Carbonic anhydrase, eukaryotic family protein
Length = 277
Score = 77.0 bits (188), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 43/81 (53%), Positives = 51/81 (62%), Gaps = 13/81 (16%)
Query: 98 LVNRGHDIMVRFXXXXXX-----XXXXXETYALRQMHWHSPSEHAVDGRRYDLELHMLH- 151
+VNRGHDIMVRF Y LRQ+HWH+PSEHAVDGRRYD+ELHM+H
Sbjct: 91 VVNRGHDIMVRFDGGDDAAAAGGLVINGTAYRLRQVHWHAPSEHAVDGRRYDMELHMVHL 150
Query: 152 --QSETRDGRYAVVAQLFDIG 170
Q++T AVV L+ IG
Sbjct: 151 NTQNQT-----AVVGILYAIG 166
>Os12g0153500 Carbonic anhydrase, eukaryotic family protein
Length = 281
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 47/73 (64%), Gaps = 1/73 (1%)
Query: 98 LVNRGHDIMVRFXXXXXXXXXXXETYALRQMHWHSPSEHAVDGRRYDLELHMLHQSETRD 157
+VN G DI ++F + Y + +HWH+PSEH ++GRR+ LELH++H+S+ D
Sbjct: 91 IVNNGKDITMKFHGEVGQVIIAGKPYRFQAIHWHAPSEHTINGRRFPLELHLVHKSDA-D 149
Query: 158 GRYAVVAQLFDIG 170
G AV++ L+ +G
Sbjct: 150 GGLAVISVLYKLG 162
>Os09g0454500 Carbonic anhydrase, eukaryotic family protein
Length = 223
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 48/89 (53%), Gaps = 4/89 (4%)
Query: 100 NRGHDIMVRFXXXXXXXXXXXETYALRQMHWHSPSEHAVDGRRYDLELHMLHQSETRDGR 159
NRGHD M+++ + Y L+Q+HWH PSEH ++G R+D E+HM+H+ +
Sbjct: 114 NRGHDYMLKWKDGNSKLTVQGKEYTLKQVHWHEPSEHTINGTRFDAEMHMVHEDPSM--A 171
Query: 160 YAVVAQLFDI--GHRRDATLDMVITLCST 186
AVV+ L G ++V T C T
Sbjct: 172 RAVVSVLLSTKAGQPNAVLTEVVTTTCLT 200
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.323 0.132 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,384,290
Number of extensions: 93490
Number of successful extensions: 265
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 264
Number of HSP's successfully gapped: 8
Length of query: 192
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 97
Effective length of database: 12,075,471
Effective search space: 1171320687
Effective search space used: 1171320687
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 153 (63.5 bits)