Os09g0454500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Carbonic anhydrase, eukaryotic family protein.
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Os09g0454500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Carbonic anhydrase, eukaryotic family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 83.28 | 0.429 | 3.03 | 0.591 | 0.227 | -2.22 | -0.445 | 21.1 | -0.0551 | 6.82 | 30.8 | 62 | -- | -- |
| 86.78 | 0.437 | 3.1 | -0.0743 | 0.239 | 0.371 | -0.435 | -- | -0.0497 | 6.7 | 30.8 | 62 | -- | -- |
| 83.63 | 0.429 | 3.04 | 0.424 | 0.231 | -2.06 | -- | 20.3 | -0.0537 | 6.62 | 30.96 | 59 | -- | -- |
| 86.7 | 0.434 | 3.1 | -0.0822 | 0.238 | 0.624 | -- | -- | -0.0497 | 6.54 | 32.38 | 14 | -- | -- |
| 86.21 | 0.435 | 3.05 | 0.451 | -- | -2.36 | -- | 22 | -0.0515 | -- | 31.09 | 48 | -- | -- |
| 87.75 | 0.439 | 3.1 | -0.0558 | 0.217 | -- | -0.482 | -- | -0.0601 | 6.97 | -- | -- | -- | -- |
| 88.35 | 0.44 | 3.1 | -0.0648 | 0.215 | -- | -- | -- | -0.0589 | 6.99 | -- | -- | -- | -- |
| 89.57 | 0.443 | 3.11 | -0.0733 | -- | 0.533 | -- | -- | -0.0468 | -- | 32.55 | 14 | -- | -- |
| 86.88 | 0.434 | 3.1 | -- | 0.236 | 0.614 | -- | -- | -0.0416 | 6.56 | 32.4 | 14 | -- | -- |
| 90.78 | 0.445 | 3.11 | -0.0604 | -- | -- | -- | -- | -0.055 | -- | -- | -- | -- | -- |
| 88.46 | 0.44 | 3.1 | -- | 0.214 | -- | -- | -- | -0.0517 | 7.01 | -- | -- | -- | -- |
| 89.71 | 0.443 | 3.11 | -- | -- | 0.526 | -- | -- | -0.0389 | -- | 32.57 | 14 | -- | -- |
| 90.88 | 0.445 | 3.11 | -- | -- | -- | -- | -- | -0.0483 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 72.01 | wind | 3.0 | 10 | > th | dose dependent | rect. | 3 | 1 |
| 3 | 72.93 | wind | 3.0 | 10 | > th | dose independent | rect. | 3 | 1 |
| 8 | 74.28 | wind | 3.0 | 90 | > th | dose dependent | rect. | 2 | 1 |
| 156 | 77.94 | wind | 7.0 | 10 | > th | dose independent | rect. | 21 | 8 |
| 167 | 77.94 | wind | 7.0 | 10 | > th | dose dependent | rect. | 21 | 8 |
| 248 | 79.02 | precipitation | 0.1 | 30 | > th | dose dependent | rect. | 3 | 1 |
| 253 | 79.03 | precipitation | 0.1 | 30 | > th | dose independent | rect. | 3 | 1 |
| 260 | 79.14 | atmosphere | 1000.0 | 90 | < th | dose independent | rect. | 10 | 4 |
| 261 | 79.35 | atmosphere | 1000.0 | 270 | < th | dose independent | rect. | 10 | 1 |
| 263 | 79.50 | atmosphere | 1000.0 | 90 | < th | dose dependent | rect. | 11 | 2 |
| 268 | 79.79 | humidity | 90.0 | 90 | < th | dose dependent | rect. | 2 | 1 |
| 269 | 79.79 | atmosphere | 1000.0 | 10 | < th | dose dependent | rect. | 11 | 3 |
| 304 | 80.34 | humidity | 90.0 | 90 | < th | dose independent | rect. | 2 | 1 |
| 312 | 80.60 | temperature | 30.0 | 270 | > th | dose dependent | rect. | 10 | 1 |
| 317 | 80.66 | temperature | 30.0 | 270 | > th | dose dependent | rect. | 18 | 17 |
| 342 | 80.89 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 2 | 2 |
| 347 | 81.03 | precipitation | 0.1 | 30 | > th | dose independent | rect. | 3 | 5 |
| 360 | 81.03 | precipitation | 0.1 | 30 | > th | dose dependent | rect. | 3 | 5 |
| 399 | 81.10 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 2 | 2 |
| 412 | 81.35 | humidity | 90.0 | 90 | < th | dose independent | rect. | 2 | 3 |
| 436 | 81.52 | temperature | 30.0 | 270 | > th | dose dependent | sin | 9 | NA |
| 437 | 81.58 | temperature | 30.0 | 270 | > th | dose independent | rect. | 9 | 2 |
| 447 | 81.65 | temperature | 30.0 | 270 | > th | dose independent | rect. | 18 | 17 |
| 483 | 81.90 | temperature | 30.0 | 90 | > th | dose dependent | rect. | 17 | 21 |
| 532 | 82.14 | atmosphere | 1005.0 | 10 | > th | dose independent | rect. | 2 | 2 |
| 598 | 82.37 | atmosphere | 1000.0 | 10 | < th | dose dependent | rect. | 12 | 1 |
| 607 | 82.42 | temperature | 30.0 | 90 | > th | dose dependent | sin | 6 | NA |
| 608 | 82.42 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 3 | 1 |
| 711 | 82.67 | wind | 3.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 714 | 82.68 | temperature | 20.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 720 | 82.70 | wind | 1.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 724 | 82.71 | humidity | 80.0 | 10 | < th | dose dependent | rect. | 2 | 4 |
| 731 | 82.74 | humidity | 80.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 746 | 82.77 | humidity | 80.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 754 | 82.79 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 758 | 82.80 | atmosphere | 1000.0 | 10 | < th | dose independent | rect. | 11 | 1 |
| 771 | 82.81 | temperature | 30.0 | 270 | > th | dose independent | sin | 9 | NA |
| 808 | 82.90 | temperature | 10.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 810 | 82.90 | temperature | 30.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 811 | 82.90 | humidity | 50.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 815 | 82.90 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 817 | 82.90 | radiation | 1.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 822 | 82.90 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 2 | 1 |
| 824 | 82.90 | temperature | 10.0 | 30 | > th | dose independent | rect. | 3 | 23 |
| 825 | 82.90 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 830 | 82.90 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 889 | 82.98 | precipitation | 0.1 | 30 | < th | dose independent | sin | 5 | NA |
| 893 | 82.98 | precipitation | 0.1 | 30 | < th | dose dependent | sin | 5 | NA |
| 903 | 83.00 | precipitation | 0.1 | 30 | > th | dose dependent | sin | 5 | NA |
| 906 | 83.01 | precipitation | 0.1 | 30 | > th | dose independent | sin | 5 | NA |
| 918 | 83.04 | humidity | 80.0 | 10 | < th | dose independent | rect. | 2 | 4 |
| 925 | 83.06 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 938 | 83.09 | precipitation | 0.1 | 30 | < th | dose independent | sin | 7 | NA |
| 941 | 83.09 | precipitation | 0.1 | 30 | < th | dose dependent | sin | 7 | NA |