BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0454500 Os09g0454500|AK111065
(223 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G28210.1 | chr2:12029997-12032338 FORWARD LENGTH=218 132 2e-31
AT1G08080.1 | chr1:2517022-2518546 REVERSE LENGTH=276 130 6e-31
AT5G56330.1 | chr5:22813768-22816162 FORWARD LENGTH=351 127 5e-30
AT4G21000.1 | chr4:11222529-11223756 FORWARD LENGTH=261 126 7e-30
AT1G08065.1 | chr1:2511788-2513341 REVERSE LENGTH=278 122 1e-28
AT4G20990.1 | chr4:11219772-11221126 FORWARD LENGTH=268 119 1e-27
AT5G04180.1 | chr5:1147907-1149237 REVERSE LENGTH=278 110 7e-25
AT3G52720.1 | chr3:19538804-19541116 REVERSE LENGTH=285 86 1e-17
>AT2G28210.1 | chr2:12029997-12032338 FORWARD LENGTH=218
Length = 217
Score = 132 bits (331), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 68/137 (49%), Positives = 91/137 (66%), Gaps = 6/137 (4%)
Query: 56 FGYE-NDATGPAKWGSLHKEWAVCGDGKKQSPIDITTVEPQKVK--EPLMQAYKAGATTI 112
F YE N GPAKWG L EW +CG G+ QSPID+ + V + L + YK T+
Sbjct: 11 FSYEWNQENGPAKWGKLRPEWKMCGKGEMQSPIDLMNKRVRLVTHLKKLTRHYKPCNATL 70
Query: 113 QNRGHDYMLKW-KDGNSKLTVQGKEYTLKQVHWHEPSEHTINGTRFDAEMHMVHEDPSMA 171
+NRGHD MLK+ ++G+ +TV G EY L Q+HWH PSEHT+NG RF E+HMVHE+ + +
Sbjct: 71 KNRGHDMMLKFGEEGSGSITVNGTEYKLLQLHWHSPSEHTMNGRRFALELHMVHENINGS 130
Query: 172 RAVVSVLLSTKAGQPNA 188
AVV+VL K G+P++
Sbjct: 131 LAVVTVLY--KIGRPDS 145
>AT1G08080.1 | chr1:2517022-2518546 REVERSE LENGTH=276
Length = 275
Score = 130 bits (326), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 67/159 (42%), Positives = 94/159 (59%), Gaps = 4/159 (2%)
Query: 24 VASLVIVFVFAFSSAITPTRADHVEGHMSHEM-FGYE-NDATGPAKWGSLHKEWAVCGDG 81
++ + V +F+ + ++ + A G + E F Y+ ND GP +WG L EW +CG G
Sbjct: 7 ISCIFFVALFSIFTIVSISSAASSHGEVEDEREFNYKKNDEKGPERWGELKPEWEMCGKG 66
Query: 82 KKQSPIDITTVEPQKVKE--PLMQAYKAGATTIQNRGHDYMLKWKDGNSKLTVQGKEYTL 139
+ QSPID+ V L + Y T++NRGHD MLK++DG + + G EY L
Sbjct: 67 EMQSPIDLMNERVNIVSHLGRLNRDYNPSNATLKNRGHDIMLKFEDGAGTIKINGFEYEL 126
Query: 140 KQVHWHEPSEHTINGTRFDAEMHMVHEDPSMARAVVSVL 178
+Q+HWH PSEHTING RF E+HMVHE + AVV+VL
Sbjct: 127 QQLHWHSPSEHTINGRRFALELHMVHEGRNRRMAVVTVL 165
>AT5G56330.1 | chr5:22813768-22816162 FORWARD LENGTH=351
Length = 350
Score = 127 bits (319), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 68/137 (49%), Positives = 81/137 (59%), Gaps = 7/137 (5%)
Query: 56 FGYENDAT-GPAKWGSLHKEWAVCGDGKKQSPIDI---TTVEPQKVKEPLMQAYKAGATT 111
F YE GPAKWG+L EW +CG GK QSPID+ V K L Y TT
Sbjct: 140 FSYETKGNKGPAKWGTLDAEWKMCGIGKMQSPIDLRDKNVVVSNKFG-LLRSQYLPSNTT 198
Query: 112 IQNRGHDYMLKWKDGNSKL--TVQGKEYTLKQVHWHEPSEHTINGTRFDAEMHMVHEDPS 169
I+NRGHD MLK+K GN + T++G Y L+Q+HWH PSEHTING RF E H+VHE
Sbjct: 199 IKNRGHDIMLKFKGGNKGIGVTIRGTRYQLQQLHWHSPSEHTINGKRFALEEHLVHESKD 258
Query: 170 MARAVVSVLLSTKAGQP 186
AVV+ L + A P
Sbjct: 259 KRYAVVAFLYNLGASDP 275
>AT4G21000.1 | chr4:11222529-11223756 FORWARD LENGTH=261
Length = 260
Score = 126 bits (317), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 68/166 (40%), Positives = 91/166 (54%), Gaps = 7/166 (4%)
Query: 24 VASLVIVFVFAFSSAITPTRADHVEGHMSHEMFGYENDA-TGPAKWGSLHKEWAVCGDGK 82
+ V+ F+ FS I A + + +F Y+ GPA+WG L +W VC GK
Sbjct: 8 ILFFVVFFIDLFSPNILFVYAREIG---NKPLFTYKQKTEKGPAEWGKLDPQWKVCSTGK 64
Query: 83 KQSPIDITTVEPQKV-KEPLMQAYKAGATTIQNRGHDYMLKWKDGNSKLTVQGKEYTLKQ 141
QSPID+T + + L + YK + IQ+RGHD M+ WK K+T+ +Y L Q
Sbjct: 65 IQSPIDLTDERVSLIHDQALSKHYKPASAVIQSRGHDVMVSWKGDGGKITIHQTDYKLVQ 124
Query: 142 VHWHEPSEHTINGTRFDAEMHMVHEDPSMARAVVSVLLSTKAGQPN 187
HWH PSEHTINGT +D E+HMVH S VV VL K G+P+
Sbjct: 125 CHWHSPSEHTINGTSYDLELHMVHTSASGKTTVVGVLY--KLGEPD 168
>AT1G08065.1 | chr1:2511788-2513341 REVERSE LENGTH=278
Length = 277
Score = 122 bits (307), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 74/171 (43%), Positives = 93/171 (54%), Gaps = 11/171 (6%)
Query: 24 VASLVIVFVFAFSS-AITPTRADHVEGHMSHE-MFGYENDA-TGPAKWGSLHKEWAVCGD 80
+ S+ VF F S I + DH G + E F YE GP WG L EWA+CG
Sbjct: 3 IPSIGYVFFLIFISITIVSSSPDH--GEVEDETQFNYEKKGEKGPENWGRLKPEWAMCGK 60
Query: 81 GKKQSPIDIT--TVEPQKVKEPLMQAYKAGATTIQNRGHDYMLKWKDGNSKL--TVQGKE 136
G QSPID+T V L Y TI+NRGHD M+K++ GN+ L T+ G E
Sbjct: 61 GNMQSPIDLTDKRVLIDHNLGYLRSQYLPSNATIKNRGHDIMMKFEGGNAGLGITINGTE 120
Query: 137 YTLKQVHWHEPSEHTINGTRFDAEMHMVHEDPSMARAVVSVLLSTKAGQPN 187
Y L+Q+HWH PSEHT+NG RF E HMVH+ AVV+ K G+P+
Sbjct: 121 YKLQQIHWHSPSEHTLNGKRFVLEEHMVHQSKDGRNAVVAFFY--KLGKPD 169
>AT4G20990.1 | chr4:11219772-11221126 FORWARD LENGTH=268
Length = 267
Score = 119 bits (298), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 58/134 (43%), Positives = 76/134 (56%), Gaps = 4/134 (2%)
Query: 56 FGYENDA-TGPAKWGSLHKEWAVCGDGKKQSPIDITTVEPQKV-KEPLMQAYKAGATTIQ 113
F YE GP WG ++ W VC G+ QSPID+T + + + YK I
Sbjct: 36 FTYEQKTEKGPEGWGKINPHWKVCNTGRYQSPIDLTNERVSLIHDQAWTRQYKPAPAVIT 95
Query: 114 NRGHDYMLKWKDGNSKLTVQGKEYTLKQVHWHEPSEHTINGTRFDAEMHMVHEDPSMARA 173
NRGHD M+ WK K+T++ ++ L Q HWH PSEHT+NGTR+D E+HMVH A
Sbjct: 96 NRGHDIMVSWKGDAGKMTIRKTDFNLVQCHWHSPSEHTVNGTRYDLELHMVHTSARGRTA 155
Query: 174 VVSVLLSTKAGQPN 187
V+ VL K G+PN
Sbjct: 156 VIGVLY--KLGEPN 167
>AT5G04180.1 | chr5:1147907-1149237 REVERSE LENGTH=278
Length = 277
Score = 110 bits (274), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 60/164 (36%), Positives = 89/164 (54%), Gaps = 10/164 (6%)
Query: 28 VIVFVFAFSSAITPTRADHVEGHMSHEMFGYENDATGPAKWGSLHKEWAVCGDGKKQSPI 87
+I+FV F + + + AD E ++ + P+KW S+ EW +CG GK+QSPI
Sbjct: 4 IILFV-TFLALSSSSLADETETEFHYK----PGEIADPSKWSSIKAEWKICGTGKRQSPI 58
Query: 88 DITTVEPQKV---KEPLMQAYKAGATTIQNRGHDYMLKWKDGNSKLTVQGKEYTLKQVHW 144
++T + V E L YK ++NRG D +KW+D K+ + +Y L Q HW
Sbjct: 59 NLTPKIARIVHNSTEILQTYYKPVEAILKNRGFDMKVKWEDDAGKIVINDTDYKLVQSHW 118
Query: 145 HEPSEHTINGTRFDAEMHMVHEDPSMARAVVSVLLSTKAGQPNA 188
H PSEH ++G R E+HMVH+ AV+ VL + G+PNA
Sbjct: 119 HAPSEHFLDGQRLAMELHMVHKSVEGHLAVIGVLF--REGEPNA 160
>AT3G52720.1 | chr3:19538804-19541116 REVERSE LENGTH=285
Length = 284
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 55/164 (33%), Positives = 83/164 (50%), Gaps = 10/164 (6%)
Query: 27 LVIVFVFAFSSAITPTRAD-HVEGHMSHEMFGYENDATGPAKWGSLHKEWAVCGDGKKQS 85
++I F S I AD EG +FGY+ GP +WG L+ + C GK QS
Sbjct: 5 MMIKLCFFSMSLICIAPADAQTEG----VVFGYKGK-NGPNQWGHLNPHFTTCAVGKLQS 59
Query: 86 PIDITTVE---PQKVKEPLMQAYKAGATTIQNRGHDYMLKWKDGNSKLTVQGKEYTLKQV 142
PIDI + K+ + Y AT + N + + + +G + ++ K YTL Q+
Sbjct: 60 PIDIQRRQIFYNHKLNSIHREYYFTNATLV-NHVCNVAMFFGEGAGDVIIENKNYTLLQM 118
Query: 143 HWHEPSEHTINGTRFDAEMHMVHEDPSMARAVVSVLLSTKAGQP 186
HWH PSEH ++G ++ AE+HMVH+ + AVV+ L +P
Sbjct: 119 HWHTPSEHHLHGVQYAAELHMVHQAKDGSFAVVASLFKIGTEEP 162
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.315 0.129 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,386,024
Number of extensions: 170012
Number of successful extensions: 361
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 350
Number of HSP's successfully gapped: 8
Length of query: 223
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 128
Effective length of database: 8,502,049
Effective search space: 1088262272
Effective search space used: 1088262272
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 110 (47.0 bits)