FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0610100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Storage protein precursor.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.05 (0.0203) R2 : 0.00576
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0696 (0.0428) R2dN8 : 0.00744 R2N8 : 0.00576
σ : 0.383
deviance : 67.26
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
65.38 0.38 3.03 0.126 0.107 0.0106 -0.0515 -1.23 0.0878 6.54 1000 1610 -- --
65.62 0.377 3.04 0.0724 0.111 -0.229 -0.0665 -- 0.0918 6.4 999 2214 -- --
65.39 0.377 3.03 0.124 0.107 0.00377 -- -1.2 0.088 6.63 1000 1655 -- --
65.62 0.377 3.04 0.0664 0.106 -0.231 -- -- 0.0925 6.44 999.1 2226 -- --
65.95 0.378 3.04 0.102 -- -0.0872 -- -0.782 0.0916 -- 1000 2598 -- --
66.43 0.382 3.05 0.0953 0.105 -- -0.0644 -- 0.0779 6.41 -- -- -- --
66.44 0.382 3.04 0.0945 0.105 -- -- -- 0.0782 6.54 -- -- -- --
66.21 0.379 3.04 0.0686 -- -0.229 -- -- 0.0937 -- 999.1 2226 -- --
65.73 0.378 3.04 -- 0.108 -0.246 -- -- 0.0855 6.41 999.1 2226 -- --
67.01 0.383 3.05 0.0971 -- -- -- -- 0.0803 -- -- -- -- --
66.67 0.382 3.05 -- 0.106 -- -- -- 0.0676 6.49 -- -- -- --
66.34 0.379 3.05 -- -- -0.241 -- -- 0.0865 -- 999.2 2226 -- --
67.26 0.383 3.05 -- -- -- -- -- 0.0696 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 60.53 radiation 10.0 14400 < th dose dependent rect. 23 1
2 60.55 atmosphere 1000.0 30 > th dose independent rect. 23 23
9 60.76 temperature 30.0 30 < th dose dependent rect. 22 1
10 60.77 atmosphere 1005.0 10 > th dose independent rect. 22 1
13 60.78 wind 1.0 30 > th dose independent rect. 22 1
14 60.78 wind 5.0 30 < th dose independent rect. 22 1
17 60.78 temperature 10.0 30 > th dose independent rect. 22 1
19 60.78 temperature 30.0 30 < th dose independent rect. 22 1
20 60.78 humidity 50.0 30 > th dose independent rect. 22 1
23 60.78 atmosphere 995.0 30 > th dose independent rect. 22 1
24 60.78 atmosphere 1010.0 30 < th dose independent rect. 22 1
26 60.78 radiation 1.0 30 < th dose independent rect. 22 1
31 60.78 temperature 10.0 30 > th dose independent rect. 23 23
32 60.78 atmosphere 995.0 30 > th dose dependent rect. 22 1
34 60.78 radiation 1.0 30 < th dose dependent rect. 22 1
39 60.79 humidity 90.0 30 < th dose independent rect. 22 1
41 60.79 precipitation 0.1 30 < th dose independent rect. 22 1
42 60.79 wind 7.0 30 < th dose dependent rect. 22 1
44 60.79 humidity 50.0 30 > th dose dependent rect. 22 1
50 60.79 atmosphere 1015.0 30 < th dose dependent rect. 22 1
51 60.79 precipitation 0.1 30 < th dose dependent rect. 22 1
53 60.80 wind 9.0 1440 < th dose independent rect. 23 1
54 60.80 temperature 10.0 1440 > th dose independent rect. 23 1
57 60.80 temperature 30.0 1440 < th dose independent rect. 23 1
62 60.80 humidity 50.0 1440 > th dose independent rect. 23 1
72 60.80 atmosphere 995.0 1440 > th dose independent rect. 23 1
73 60.80 radiation 1.0 1440 < th dose independent rect. 23 1
93 60.80 temperature 10.0 1440 > th dose independent rect. 24 23
97 60.80 temperature 10.0 30 > th dose dependent rect. 22 1
98 60.80 temperature 25.0 30 > th dose dependent rect. 22 1
99 60.80 humidity 90.0 30 < th dose dependent rect. 22 1
100 60.80 radiation 1.0 1440 < th dose dependent rect. 23 1
110 60.81 temperature 25.0 30 > th dose independent rect. 22 1
119 60.82 wind 1.0 30 > th dose dependent rect. 22 1
146 60.84 precipitation 0.1 30 < th dose independent rect. 23 23
154 60.84 precipitation 0.1 30 < th dose dependent rect. 23 23
174 61.09 wind 9.0 30 < th dose independent rect. 23 23
192 61.99 humidity 50.0 30 > th dose independent rect. 23 23
195 62.08 precipitation 0.1 1440 < th dose independent rect. 23 1
196 62.08 precipitation 0.1 1440 < th dose dependent rect. 23 1
204 62.48 temperature 30.0 30 < th dose independent rect. 23 23
213 62.94 atmosphere 1015.0 30 < th dose independent rect. 23 23
221 63.18 radiation 10.0 30 < th dose dependent rect. 23 23
252 63.64 temperature 10.0 30 > th dose dependent rect. 23 23
296 63.84 radiation 10.0 30 < th dose independent rect. 23 23
330 64.00 temperature 10.0 30 > th dose dependent rect. 23 7
366 64.10 wind 1.0 30 < th dose independent rect. 10 1
367 64.10 temperature 10.0 1440 > th dose independent rect. 11 1
371 64.10 atmosphere 995.0 1440 > th dose independent rect. 11 1
374 64.10 precipitation 0.1 1440 < th dose independent rect. 11 1
377 64.10 temperature 10.0 1440 > th dose independent rect. 12 23
380 64.10 wind 1.0 30 < th dose dependent rect. 10 1
381 64.10 precipitation 0.1 1440 < th dose dependent rect. 11 1
386 64.14 wind 1.0 90 > th dose independent rect. 23 22
389 64.15 humidity 70.0 30 < th dose independent rect. 10 1
396 64.17 atmosphere 1005.0 30 > th dose independent rect. 10 1
399 64.17 radiation 40.0 90 < th dose dependent rect. 23 11
407 64.20 temperature 25.0 30 > th dose dependent rect. 10 1
408 64.20 atmosphere 1000.0 30 > th dose dependent rect. 10 1
413 64.22 temperature 20.0 90 > th dose independent rect. 23 6
424 64.24 wind 3.0 30 < th dose dependent rect. 6 17
428 64.26 humidity 70.0 30 < th dose dependent rect. 10 1
434 64.28 atmosphere 1010.0 30 < th dose independent rect. 10 1
446 64.32 temperature 25.0 30 > th dose independent rect. 10 1
447 64.32 radiation 20.0 30 > th dose independent rect. 10 1
459 64.34 radiation 40.0 30 < th dose independent rect. 10 1
463 64.36 temperature 30.0 30 < th dose independent rect. 10 1
467 64.37 wind 5.0 30 < th dose independent rect. 10 1
470 64.37 temperature 10.0 30 > th dose independent rect. 10 1
472 64.37 humidity 50.0 30 > th dose independent rect. 10 1
474 64.37 humidity 90.0 30 < th dose independent rect. 10 1
478 64.37 precipitation 0.1 30 < th dose independent rect. 10 1
479 64.37 wind 3.0 30 < th dose independent rect. 6 17
481 64.37 temperature 10.0 30 > th dose independent rect. 11 23
482 64.37 precipitation 0.1 30 < th dose dependent rect. 10 1
485 64.38 wind 1.0 30 > th dose independent rect. 10 1
487 64.38 wind 7.0 30 < th dose dependent rect. 10 1
507 64.42 humidity 80.0 30 > th dose independent rect. 23 7
512 64.43 radiation 1.0 30 > th dose dependent rect. 10 1
522 64.45 radiation 40.0 30 < th dose dependent rect. 10 1
531 64.47 humidity 50.0 30 > th dose dependent rect. 23 11
542 64.49 atmosphere 1000.0 30 > th dose independent rect. 23 7
543 64.49 wind 3.0 30 < th dose independent rect. 10 13
596 64.51 wind 3.0 30 < th dose independent rect. 17 6
605 64.52 wind 1.0 30 > th dose dependent rect. 10 1
609 64.52 radiation 10.0 30 < th dose dependent rect. 23 21
684 64.55 wind 9.0 30 < th dose independent rect. 11 23
685 64.55 humidity 50.0 30 > th dose dependent rect. 10 1
695 64.56 temperature 25.0 270 > th dose dependent rect. 19 1
738 64.59 atmosphere 1000.0 90 > th dose independent rect. 23 10
745 64.60 temperature 10.0 1440 > th dose independent rect. 24 7
748 64.60 temperature 30.0 1440 < th dose independent rect. 24 7
752 64.60 humidity 50.0 1440 > th dose independent rect. 24 7
757 64.60 atmosphere 995.0 1440 > th dose independent rect. 24 7
758 64.60 radiation 40.0 1440 < th dose independent rect. 24 7
762 64.60 temperature 10.0 1440 > th dose independent rect. 7 17
777 64.61 radiation 10.0 30 < th dose independent rect. 23 11
785 64.62 wind 1.0 10 < th dose independent rect. 6 2
787 64.62 temperature 20.0 270 > th dose dependent rect. 24 1
800 64.63 humidity 50.0 30 > th dose dependent rect. 23 7
803 64.63 wind 1.0 30 < th dose dependent rect. 6 12
826 64.64 radiation 1.0 90 < th dose independent rect. 23 9
860 64.67 temperature 25.0 720 > th dose independent rect. 23 10
865 64.67 wind 1.0 30 < th dose dependent rect. 6 8
880 64.69 wind 9.0 30 < th dose independent rect. 23 7
881 64.69 temperature 10.0 30 > th dose independent rect. 23 7
882 64.69 temperature 30.0 30 < th dose independent rect. 23 7
883 64.69 humidity 50.0 30 > th dose independent rect. 23 7
887 64.69 radiation 20.0 30 < th dose independent rect. 23 7
890 64.69 wind 3.0 30 < th dose independent rect. 13 10
892 64.69 temperature 10.0 30 > th dose independent rect. 6 17
894 64.69 atmosphere 1015.0 30 < th dose independent rect. 6 17
895 64.69 precipitation 0.1 30 < th dose independent rect. 6 17
900 64.69 radiation 40.0 30 < th dose dependent rect. 23 7
907 64.69 precipitation 0.1 30 < th dose dependent rect. 6 17
927 64.70 radiation 10.0 30 < th dose independent rect. 23 21
940 64.71 wind 1.0 30 < th dose independent rect. 6 8
950 64.72 precipitation 0.1 30 < th dose independent rect. 23 7
957 64.72 precipitation 0.1 30 < th dose dependent rect. 23 7
966 64.73 atmosphere 1015.0 30 < th dose dependent rect. 10 1
990 64.75 temperature 25.0 4320 > th dose independent rect. 23 2
997 64.75 humidity 50.0 30 > th dose independent rect. 6 17