BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0523100 Os06g0523100|AK062190
(463 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0523100 Conserved hypothetical protein 867 0.0
Os01g0621900 Conserved hypothetical protein 446 e-125
Os04g0640900 Lambda repressor-like, DNA-binding domain cont... 415 e-116
Os04g0458200 Conserved hypothetical protein 392 e-109
Os02g0575700 Conserved hypothetical protein 387 e-108
Os02g0259100 Conserved hypothetical protein 243 2e-64
Os06g0472700 Conserved hypothetical protein 179 4e-45
Os11g0223400 Conserved hypothetical protein 162 5e-40
>Os06g0523100 Conserved hypothetical protein
Length = 463
Score = 867 bits (2240), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 439/463 (94%), Positives = 439/463 (94%)
Query: 1 MSSVPTVDEGSTSARWKSGGKLLPYLYQSRNNTGHFSSKELPGSSNQSQDLAPLPKMIQT 60
MSSVPTVDEGSTSARWKSGGKLLPYLYQSRNNTGHFSSKELPGSSNQSQDLAPLPKMIQT
Sbjct: 1 MSSVPTVDEGSTSARWKSGGKLLPYLYQSRNNTGHFSSKELPGSSNQSQDLAPLPKMIQT 60
Query: 61 PQSPVTSTSGVVSFQQRCNSTKICSQPGCAKGARGSSGRCIAHGGGRRCQREGCKKGAEG 120
PQSPVTSTSGVVSFQQRCNSTKICSQPGCAKGARGSSGRCIAHGGGRRCQREGCKKGAEG
Sbjct: 61 PQSPVTSTSGVVSFQQRCNSTKICSQPGCAKGARGSSGRCIAHGGGRRCQREGCKKGAEG 120
Query: 121 KTIFCKAHGGGRRCEHLGCTKSAEGRTDFCIAHXXXXXXXXXXXXKAARGKSGLCIKHGG 180
KTIFCKAHGGGRRCEHLGCTKSAEGRTDFCIAH KAARGKSGLCIKHGG
Sbjct: 121 KTIFCKAHGGGRRCEHLGCTKSAEGRTDFCIAHGGGRRCSRDGCRKAARGKSGLCIKHGG 180
Query: 181 GKRCQKLNCTKSAEGQSGFCIAHGGGRRCKHDGCTKGAQGSTNFCKAHGGGKRCTHPNCS 240
GKRCQKLNCTKSAEGQSGFCIAHGGGRRCKHDGCTKGAQGSTNFCKAHGGGKRCTHPNCS
Sbjct: 181 GKRCQKLNCTKSAEGQSGFCIAHGGGRRCKHDGCTKGAQGSTNFCKAHGGGKRCTHPNCS 240
Query: 241 KGAEGSTALCKAHGGGKRCSAEGCPKSVHGGTEFCVAHGGGKRCVVPGCTKSARGRTDCC 300
KGAEGSTALCKAHGGGKRCSAEGCPKSVHGGTEFCVAHGGGKRCVVPGCTKSARGRTDCC
Sbjct: 241 KGAEGSTALCKAHGGGKRCSAEGCPKSVHGGTEFCVAHGGGKRCVVPGCTKSARGRTDCC 300
Query: 301 VRHGGGKRCQFTGCSKSAQGSTDFCKAHGGGKRCLWXXXXXXXXXXXXTCERFARGKKGL 360
VRHGGGKRCQFTGCSKSAQGSTDFCKAHGGGKRCLW TCERFARGKKGL
Sbjct: 301 VRHGGGKRCQFTGCSKSAQGSTDFCKAHGGGKRCLWGQSGSGLGDGSGTCERFARGKKGL 360
Query: 361 CVAHNALVEDSRVRGGQTVGTIALPGSTGADSDVSHGTLPGNSFNFGETFAANTKQALHH 420
CVAHNALVEDSRVRGGQTVGTIALPGSTGADSDVSHGTLPGNSFNFGETFAANTKQALHH
Sbjct: 361 CVAHNALVEDSRVRGGQTVGTIALPGSTGADSDVSHGTLPGNSFNFGETFAANTKQALHH 420
Query: 421 VQSPVPEGRVHGGNIAAMLANSMDYQKQLNFSTGASTSDRNWL 463
VQSPVPEGRVHGGNIAAMLANSMDYQKQLNFSTGASTSDRNWL
Sbjct: 421 VQSPVPEGRVHGGNIAAMLANSMDYQKQLNFSTGASTSDRNWL 463
>Os01g0621900 Conserved hypothetical protein
Length = 646
Score = 446 bits (1148), Expect = e-125, Method: Compositional matrix adjust.
Identities = 255/464 (54%), Positives = 304/464 (65%), Gaps = 13/464 (2%)
Query: 3 SVPTVDEGSTSARWKSGGKLLPYLYQSRNNTGHFSSKELPGSSNQSQDLAPLPK-MIQTP 61
S + EGS W ++ Y S T F ++P + + + + ++ +
Sbjct: 182 SPAIIGEGSVPCTWVFEKSVISSSYASEA-TYTFPFSKVPKTGDAAMSSPVISSTLVTSM 240
Query: 62 QSPVTSTSGVVSFQQRCNSTKICSQPGCAKGARGSSGRCIAHGGGRRCQREGCKKGAEGK 121
+SPV TSG ++ QQR + TK C PGC KGARG+SG CIAHGGGRRCQ+ GC+KGAEG+
Sbjct: 241 KSPVACTSGSINPQQRNSITKNCQFPGCVKGARGASGHCIAHGGGRRCQKPGCQKGAEGR 300
Query: 122 TIFCKAHGGGRRCEHLGCTKSAEGRTDFCIAHXXXXXXXXXXXXKAARGKSGLCIKHGGG 181
TI+CKAHGGGRRC+ LGCTKSAEGRTD CIAH +AARGKSGLCI+HGGG
Sbjct: 301 TIYCKAHGGGRRCQFLGCTKSAEGRTDHCIAHGGGRRCSHDGCSRAARGKSGLCIRHGGG 360
Query: 182 KRCQKLNCTKSAEGQSGFCIAHGGGRRCKHDGCTKGAQGSTNFCKAHGGGKRCTHPNCSK 241
KRCQK NC +SAEG SGFCI+HGGGRRC+ CTKGAQGST FCKAHGGGKRCT C+K
Sbjct: 361 KRCQKENCIRSAEGHSGFCISHGGGRRCQFPECTKGAQGSTKFCKAHGGGKRCTFSGCNK 420
Query: 242 GAEGSTALCKAHGGGKRCSAEG---CPKSVHGGTEFCVAHGGGKRCVVPGCTKSARGRTD 298
GAEGST CK HGGGKRC +G CPKSVHGGT++CVAHGGGKRC + GCTKSARGRT+
Sbjct: 421 GAEGSTLFCKGHGGGKRCLFQGGGVCPKSVHGGTQYCVAHGGGKRCAISGCTKSARGRTE 480
Query: 299 CCVRHGGGKRCQFTGCSKSAQGSTDFCKAHGGGKRCLWXXXXXXXXXXXXTCERFARGKK 358
CVRHGGGKRC+F GC+KSAQGSTDFCKAHGGGKRC W C++FAR K
Sbjct: 481 YCVRHGGGKRCKFEGCAKSAQGSTDFCKAHGGGKRCSWGQVDLNFGVGAPQCDKFARSKT 540
Query: 359 GLCVAHNALVEDSRVRGGQTVGTIALPGSTGADSDVSHGT-LPGNSFNFGETFAANTKQA 417
GLC AH ALV+D VRGG T+G +T A D T + G+ + +
Sbjct: 541 GLCSAHCALVQDHCVRGG-TLGAATFQFATDAKFDEMEVTPVKGDPHAQASSDDQSHLGG 599
Query: 418 LHHVQSP------VPEGRVHGGNIAAMLANSMDYQKQLNFSTGA 455
H P EGRVHGG + A+L+ ++ N GA
Sbjct: 600 AHPPAVPAITSDRFSEGRVHGGGLLALLSRGGNHANAGNSKNGA 643
>Os04g0640900 Lambda repressor-like, DNA-binding domain containing protein
Length = 637
Score = 415 bits (1067), Expect = e-116, Method: Compositional matrix adjust.
Identities = 249/506 (49%), Positives = 302/506 (59%), Gaps = 83/506 (16%)
Query: 4 VPTVDEGSTSARWKSGGKLLPYLYQSRNN------------TGHFSSKE------LPGSS 45
P DEGSTSA+ K GG +LP L+ R++ H + + + +
Sbjct: 134 FPLTDEGSTSAKRKPGGYVLPLLFAPRSDDICPNGTPPVTDIQHVETVDDCDDDHITSLN 193
Query: 46 NQSQDLAPLPKMIQTPQSPVTSTSGVV----SFQQRCNS--TKICSQPGCAKGARGSSGR 99
Q ++P P T +TS ++ S +QR + K C GC+KGARG++G
Sbjct: 194 QQKVQISPEPSA--TTDCSFAATSDMIFSSTSTEQRSHQRHPKKCRFNGCSKGARGATGL 251
Query: 100 CIAHGGGRRCQREGCKKGAEGKTIFCKAHGGGRRCEHLGCTKSAEGRTDFCIAHXXXXXX 159
CI+HGGG+RCQ+ GC KGAE +T +CK+HGGG+RC+ LGCTKSAEG+T+FCIAH
Sbjct: 252 CISHGGGQRCQKPGCNKGAESRTAYCKSHGGGKRCQELGCTKSAEGKTEFCIAHGGGRRC 311
Query: 160 XXXXXXKAARGKSGLCIKHGGGKRCQKLNCTKSAEGQSGFCIAHGGGRRCKHDGCTKGAQ 219
KAARG+SG CIKHGGGKRC+ C++SAEGQ G CI+HGGGRRC++ C+KGAQ
Sbjct: 312 GTPGCTKAARGRSGFCIKHGGGKRCRVEGCSRSAEGQFGLCISHGGGRRCQYPNCSKGAQ 371
Query: 220 GSTNFCKAHGGGKRCTHPNCSKGAEGSTALCKAHGGGKRCSAEG---CPKSVHGGTEFCV 276
G T FCK+HGGGKRC C+KGAEG+T LCK HGGGKRC EG CPKSVHGGT FCV
Sbjct: 372 GGTMFCKSHGGGKRCIFEGCTKGAEGNTLLCKGHGGGKRCLFEGGGVCPKSVHGGTSFCV 431
Query: 277 AHGGGKRCVVPGCTKSARGRTDCCVRHGGGKRCQFTGCSKSAQGSTDFCKAHGGGKRCLW 336
AHGGGKRC VPGCTKSARGRTDCCVRHGGGKRC+ GC KSAQGSTDFCKAHGGGKRC W
Sbjct: 432 AHGGGKRCSVPGCTKSARGRTDCCVRHGGGKRCKVDGCDKSAQGSTDFCKAHGGGKRCAW 491
Query: 337 XXXXXXXXXXXXTCERFARGKKGLCVAHNALVEDSRV------RG-------GQTVGTIA 383
CERFARG+ GLC AH L+ +V RG + V +
Sbjct: 492 STG----------CERFARGRSGLCAAHGTLMASKQVPESEHSRGMIRNSLFSKMVSASS 541
Query: 384 LPGSTGADSDVSHGTLPGNSFNFGETFAANTKQAL---HHVQSP---------------- 424
+ D +S +LPG S + GE+ L H V P
Sbjct: 542 MTAGASMDHAIS-SSLPGASSDRGESLEEMRNAKLLIPHQVLVPGSMRPSSSHGKGQEDG 600
Query: 425 -----------VPEGRVHGGNIAAML 439
VPEGRVHGG + +ML
Sbjct: 601 GSQEQQCFGFVVPEGRVHGGGLMSML 626
>Os04g0458200 Conserved hypothetical protein
Length = 631
Score = 392 bits (1006), Expect = e-109, Method: Compositional matrix adjust.
Identities = 228/409 (55%), Positives = 262/409 (64%), Gaps = 34/409 (8%)
Query: 1 MSSVPTVDEGSTSARWKSGGKLLPYLY------QSRNNTGHFS----SKELPGSSNQSQD 50
+ S VDE S S +S G +P L S N H + S +L S N +
Sbjct: 135 VHSFTVVDEASASPSVRSIGGYMPSLLFAPRSGSSAVNETHEAETQDSLDLTHSDNDNTQ 194
Query: 51 -------LAPLPKMIQTPQSPVTS--TSGVVSFQQRCNS--TKICSQPGCAKGARGSSGR 99
L+P P + V+S + + +QR + K C GC+KGARG+SG
Sbjct: 195 HVQHHLQLSPEPSAMTDTSFGVSSDVVTATTTSEQRNHPRHPKKCRFKGCSKGARGASGL 254
Query: 100 CIAHGGGRRCQREGCKKGAEGKTIFCKAHGGGRRCEHLGCTKSAEGRTDFCIAHXXXXXX 159
CIAHGGG+RC + GC KGAE T +CKAHGGGRRCE LGCTKSAEG+TD+CIAH
Sbjct: 255 CIAHGGGQRCHKPGCHKGAESSTAYCKAHGGGRRCEELGCTKSAEGKTDYCIAHGGGRRC 314
Query: 160 XXXXXXKAARGKSGLCIKHGGGKRCQKLNCTKSAEGQSGFCIAHGGGRRCKHDGCTKGAQ 219
KAARGKSG CIKHGGGKRC C +SAEG++G CI+HGGGRRC+ C+KGAQ
Sbjct: 315 EHDGCPKAARGKSGRCIKHGGGKRCTVQGCIRSAEGKAGLCISHGGGRRCQFPDCSKGAQ 374
Query: 220 GSTNFCKAHGGGKRCTHPNCSKGAEGSTALCKAHGGGKRCSAEG---CPKSVHGGTEFCV 276
GST +CK HGGGKRC CSKGAEGST LCKAHGGGKRC EG CPKSVHGGTE+CV
Sbjct: 375 GSTLYCKGHGGGKRCIFDGCSKGAEGSTPLCKAHGGGKRCMFEGGGVCPKSVHGGTEYCV 434
Query: 277 AHGGGKRCVVPGCTKSARGRTDCCVRHGGGKRCQFTGCSKSAQGSTDFCKAHGGGKRCLW 336
AHGGGKRC V GCTKSARGRTDCCV+HGGGKRC+ CSKSAQGSTDFCKAHGGGKRC W
Sbjct: 435 AHGGGKRCSVAGCTKSARGRTDCCVKHGGGKRCKVDNCSKSAQGSTDFCKAHGGGKRCTW 494
Query: 337 XXXXXXXXXXXXTCERFARGKKGLCVAHNALVEDSRVRGGQTVGTIALP 385
CE+FARG+ GLC AH L + R G +P
Sbjct: 495 GTG----------CEKFARGRSGLCAAHGTLAAKQQERDAANNGAGMIP 533
>Os02g0575700 Conserved hypothetical protein
Length = 655
Score = 387 bits (995), Expect = e-108, Method: Compositional matrix adjust.
Identities = 227/415 (54%), Positives = 260/415 (62%), Gaps = 53/415 (12%)
Query: 1 MSSVPTVDEGSTSARWKSGGKLLPYLYQSRNNTGHFSSKELPGSSNQSQD---------- 50
+S VDEGSTSAR SGG + L+ R N ++ + +
Sbjct: 145 ISFAAAVDEGSTSARRSSGGYMPSLLFAPRPNASAPEEARHDVVADHTDNTVSGGGARHG 204
Query: 51 ---------LAPLPKMIQTPQSPVTSTSGVVS-------------------FQQRCNSTK 82
L+P P+ P + +T TS VS Q + K
Sbjct: 205 HARRRVVRQLSPEPE--PEPSATMTETSFGVSSDVVTTVTNPVTTQPAAAAAQSQRRHPK 262
Query: 83 ICSQPGCAKGARGSSGRCIAHGGGRRCQREGCKKGAEGKTIFCKAHGGGRRCEHLGCTKS 142
C GC+KGARG+SG CIAHGGG+RCQ+ GC KGAE +T +CKAHGGGRRC LGCTKS
Sbjct: 263 KCRFKGCSKGARGASGLCIAHGGGQRCQKPGCHKGAESRTAYCKAHGGGRRCMQLGCTKS 322
Query: 143 AEGRTDFCIAHXXXXXXXXXXXXKAARGKSGLCIKHGGGKRCQKLNCTKSAEGQSGFCIA 202
AEG+TD CIAH KAARGKSG CIKHGGGKRC C +SAEG+ G CI+
Sbjct: 323 AEGKTDHCIAHGGGRRCGHQGCPKAARGKSGRCIKHGGGKRCSVEGCIRSAEGRVGLCIS 382
Query: 203 HGGGRRCKHDGCTKGAQGSTNFCKAHGGGKRCTHPNCSKGAEGSTALCKAHGGGKRCSAE 262
HGGGRRC++ C KGAQGST +CKAHGGGKRC C KGAEGST LCKAHGGGKRC E
Sbjct: 383 HGGGRRCQYPDCRKGAQGSTLYCKAHGGGKRCVFDGCLKGAEGSTPLCKAHGGGKRCMFE 442
Query: 263 G---CPKSVHGGTEFCVAHGGGKRCVVPGCTKSARGRTDCCVRHGGGKRCQFTGCSKSAQ 319
G CPKSVHGGT FCVAHGGGKRC VPGC KSARGRTDCCV+HGGGKRC+ GC+KSAQ
Sbjct: 443 GGGLCPKSVHGGTSFCVAHGGGKRCTVPGCGKSARGRTDCCVKHGGGKRCRVDGCAKSAQ 502
Query: 320 GSTDFCKAHGGGKRCLWXXXXXXXXXXXXTCERFARGKKGLCVAHNALVEDSRVR 374
GST+FCKAHGGGKRC W CE+FARG+ GLC AH L+ + R
Sbjct: 503 GSTEFCKAHGGGKRCTWATG----------CEKFARGRSGLCAAHGTLMASQQRR 547
>Os02g0259100 Conserved hypothetical protein
Length = 357
Score = 243 bits (621), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 130/192 (67%), Positives = 148/192 (77%), Gaps = 2/192 (1%)
Query: 1 MSSVPTVDEGSTSARWKSGGKLLPYLYQSRNNTGHFSSKEL-PGSSNQSQDLAPLPKMIQ 59
M VPTVDEGSTSAR SG ++L +L ++ + FS +E+ PGSSNQSQ AP+P ++Q
Sbjct: 161 MDLVPTVDEGSTSARRPSGCQVLSFLNKTAKMS-EFSPREVFPGSSNQSQGPAPMPTLLQ 219
Query: 60 TPQSPVTSTSGVVSFQQRCNSTKICSQPGCAKGARGSSGRCIAHGGGRRCQREGCKKGAE 119
P+SPV TSG+ QQR +STK C+ PGC KGARGSSGRCIAHGGGRRCQ++GC KGAE
Sbjct: 220 LPKSPVACTSGLSRPQQRSSSTKNCTYPGCMKGARGSSGRCIAHGGGRRCQKDGCDKGAE 279
Query: 120 GKTIFCKAHGGGRRCEHLGCTKSAEGRTDFCIAHXXXXXXXXXXXXKAARGKSGLCIKHG 179
GKTIFCKAHGGGRRCEHLGCTKSAEGRTDFCIAH +AARGKSG CIKHG
Sbjct: 280 GKTIFCKAHGGGRRCEHLGCTKSAEGRTDFCIAHGGGRRCSHEGCKRAARGKSGRCIKHG 339
Query: 180 GGKRCQKLNCTK 191
GGKRCQ CTK
Sbjct: 340 GGKRCQHAGCTK 351
Score = 132 bits (332), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 68/110 (61%), Positives = 77/110 (70%)
Query: 182 KRCQKLNCTKSAEGQSGFCIAHGGGRRCKHDGCTKGAQGSTNFCKAHGGGKRCTHPNCSK 241
K C C K A G SG CIAHGGGRRC+ DGC KGA+G T FCKAHGGG+RC H C+K
Sbjct: 242 KNCTYPGCMKGARGSSGRCIAHGGGRRCQKDGCDKGAEGKTIFCKAHGGGRRCEHLGCTK 301
Query: 242 GAEGSTALCKAHGGGKRCSAEGCPKSVHGGTEFCVAHGGGKRCVVPGCTK 291
AEG T C AHGGG+RCS EGC ++ G + C+ HGGGKRC GCTK
Sbjct: 302 SAEGRTDFCIAHGGGRRCSHEGCKRAARGKSGRCIKHGGGKRCQHAGCTK 351
Score = 131 bits (330), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 64/110 (58%), Positives = 80/110 (72%)
Query: 207 RRCKHDGCTKGAQGSTNFCKAHGGGKRCTHPNCSKGAEGSTALCKAHGGGKRCSAEGCPK 266
+ C + GC KGA+GS+ C AHGGG+RC C KGAEG T CKAHGGG+RC GC K
Sbjct: 242 KNCTYPGCMKGARGSSGRCIAHGGGRRCQKDGCDKGAEGKTIFCKAHGGGRRCEHLGCTK 301
Query: 267 SVHGGTEFCVAHGGGKRCVVPGCTKSARGRTDCCVRHGGGKRCQFTGCSK 316
S G T+FC+AHGGG+RC GC ++ARG++ C++HGGGKRCQ GC+K
Sbjct: 302 SAEGRTDFCIAHGGGRRCSHEGCKRAARGKSGRCIKHGGGKRCQHAGCTK 351
Score = 125 bits (314), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 63/101 (62%), Positives = 73/101 (72%)
Query: 166 KAARGKSGLCIKHGGGKRCQKLNCTKSAEGQSGFCIAHGGGRRCKHDGCTKGAQGSTNFC 225
K ARG SG CI HGGG+RCQK C K AEG++ FC AHGGGRRC+H GCTK A+G T+FC
Sbjct: 251 KGARGSSGRCIAHGGGRRCQKDGCDKGAEGKTIFCKAHGGGRRCEHLGCTKSAEGRTDFC 310
Query: 226 KAHGGGKRCTHPNCSKGAEGSTALCKAHGGGKRCSAEGCPK 266
AHGGG+RC+H C + A G + C HGGGKRC GC K
Sbjct: 311 IAHGGGRRCSHEGCKRAARGKSGRCIKHGGGKRCQHAGCTK 351
Score = 120 bits (301), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 61/103 (59%), Positives = 72/103 (69%)
Query: 232 KRCTHPNCSKGAEGSTALCKAHGGGKRCSAEGCPKSVHGGTEFCVAHGGGKRCVVPGCTK 291
K CT+P C KGA GS+ C AHGGG+RC +GC K G T FC AHGGG+RC GCTK
Sbjct: 242 KNCTYPGCMKGARGSSGRCIAHGGGRRCQKDGCDKGAEGKTIFCKAHGGGRRCEHLGCTK 301
Query: 292 SARGRTDCCVRHGGGKRCQFTGCSKSAQGSTDFCKAHGGGKRC 334
SA GRTD C+ HGGG+RC GC ++A+G + C HGGGKRC
Sbjct: 302 SAEGRTDFCIAHGGGRRCSHEGCKRAARGKSGRCIKHGGGKRC 344
Score = 97.1 bits (240), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 53/108 (49%), Positives = 65/108 (60%), Gaps = 11/108 (10%)
Query: 257 KRCSAEGCPKSVHGGTEFCVAHGGGKRCVVPGCTKSARGRTDCCVRHGGGKRCQFTGCSK 316
K C+ GC K G + C+AHGGG+RC GC K A G+T C HGGG+RC+ GC+K
Sbjct: 242 KNCTYPGCMKGARGSSGRCIAHGGGRRCQKDGCDKGAEGKTIFCKAHGGGRRCEHLGCTK 301
Query: 317 SAQGSTDFCKAHGGGKRCLWXXXXXXXXXXXXTCERFARGKKGLCVAH 364
SA+G TDFC AHGGG+RC C+R ARGK G C+ H
Sbjct: 302 SAEGRTDFCIAHGGGRRC-----------SHEGCKRAARGKSGRCIKH 338
>Os06g0472700 Conserved hypothetical protein
Length = 379
Score = 179 bits (454), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 108/246 (43%), Positives = 139/246 (56%), Gaps = 8/246 (3%)
Query: 96 SSGRCIAHGGGRRCQREGCKKGAEGKTIFCKAHGGGRRCEHLGCTKSAEGRTDFCIAHXX 155
S GR + G+RCQR GC EG+T+ CK+H G+RC+ LGC + C++H
Sbjct: 30 SDGRSVV---GQRCQRLGCNNVVEGQTLLCKSHSIGQRCQMLGCPHIVPDGSVLCMSHGG 86
Query: 156 XXXXXXXXXXKAARGKSGLCIKHGGGKRCQKLNCTKSAEGQSGFCIAHGGGRRCKHDGCT 215
A KS + IK+ G + + G +G G CK+ GC+
Sbjct: 87 GRPLGEPGSSTVACSKSEISIKYEGESGFRVTQNAGNDLGSAGIYNPDGDVVMCKYQGCS 146
Query: 216 KGAQGSTNFCKAH-GGGKRCTHPNCSKGAEGSTALCKAHGGGKRCSAEGCPK----SVHG 270
K AQG+ +CK H GG K C C+KGA G T LC AHGGGKRC+ GCP S G
Sbjct: 147 KRAQGNAMYCKIHRGGSKGCMVQGCTKGAHGGTPLCIAHGGGKRCAVTGCPNAACGSSQG 206
Query: 271 GTEFCVAHGGGKRCVVPGCTKSARGRTDCCVRHGGGKRCQFTGCSKSAQGSTDFCKAHGG 330
T+ CV HGGG+RC GC K A+G TD C+ HGGG+RC+F GC KSAQG +D+C HGG
Sbjct: 207 LTDRCVRHGGGRRCRFDGCVKGAQGNTDFCIGHGGGRRCKFEGCGKSAQGRSDYCIKHGG 266
Query: 331 GKRCLW 336
G+RC +
Sbjct: 267 GRRCKF 272
Score = 121 bits (303), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 82/225 (36%), Positives = 106/225 (47%), Gaps = 30/225 (13%)
Query: 84 CSQPGCAKGARGSSGRCIAHGGGR----------RCQREGCKKGAEGKTIFCKAHGGGR- 132
C GC S C++HGGGR C + EG++ F G
Sbjct: 65 CQMLGCPHIVPDGSVLCMSHGGGRPLGEPGSSTVACSKSEISIKYEGESGFRVTQNAGND 124
Query: 133 --------------RCEHLGCTKSAEGRTDFCIAHXXXXXX-XXXXXXKAARGKSGLCIK 177
C++ GC+K A+G +C H K A G + LCI
Sbjct: 125 LGSAGIYNPDGDVVMCKYQGCSKRAQGNAMYCKIHRGGSKGCMVQGCTKGAHGGTPLCIA 184
Query: 178 HGGGKRCQKLNCTKSA----EGQSGFCIAHGGGRRCKHDGCTKGAQGSTNFCKAHGGGKR 233
HGGGKRC C +A +G + C+ HGGGRRC+ DGC KGAQG+T+FC HGGG+R
Sbjct: 185 HGGGKRCAVTGCPNAACGSSQGLTDRCVRHGGGRRCRFDGCVKGAQGNTDFCIGHGGGRR 244
Query: 234 CTHPNCSKGAEGSTALCKAHGGGKRCSAEGCPKSVHGGTEFCVAH 278
C C K A+G + C HGGG+RC +GC S G +FC H
Sbjct: 245 CKFEGCGKSAQGRSDYCIKHGGGRRCKFQGCATSAKWGMDFCSLH 289
Score = 120 bits (300), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 70/172 (40%), Positives = 96/172 (55%), Gaps = 22/172 (12%)
Query: 83 ICSQPGCAKGARGSSGRCIAHGGGRR-CQREGCKKGAEGKTIFCKAHGGGRRCEHLGCTK 141
+C GC+K A+G++ C H GG + C +GC KGA G T C AHGGG+RC GC
Sbjct: 139 MCKYQGCSKRAQGNAMYCKIHRGGSKGCMVQGCTKGAHGGTPLCIAHGGGKRCAVTGCPN 198
Query: 142 SAEGRTDFCIAHXXXXXXXXXXXXKAARGKSGLCIKHGGGKRCQKLNCTKSAEGQSGFCI 201
+A G +++G + C++HGGG+RC+ C K A+G + FCI
Sbjct: 199 AACG---------------------SSQGLTDRCVRHGGGRRCRFDGCVKGAQGNTDFCI 237
Query: 202 AHGGGRRCKHDGCTKGAQGSTNFCKAHGGGKRCTHPNCSKGAEGSTALCKAH 253
HGGGRRCK +GC K AQG +++C HGGG+RC C+ A+ C H
Sbjct: 238 GHGGGRRCKFEGCGKSAQGRSDYCIKHGGGRRCKFQGCATSAKWGMDFCSLH 289
Score = 100 bits (248), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 60/127 (47%), Positives = 71/127 (55%), Gaps = 4/127 (3%)
Query: 81 TKICSQPGCAKGARGSSGRCIAHGGGRRCQREGCKKGA----EGKTIFCKAHGGGRRCEH 136
+K C GC KGA G + CIAHGGG+RC GC A +G T C HGGGRRC
Sbjct: 163 SKGCMVQGCTKGAHGGTPLCIAHGGGKRCAVTGCPNAACGSSQGLTDRCVRHGGGRRCRF 222
Query: 137 LGCTKSAEGRTDFCIAHXXXXXXXXXXXXKAARGKSGLCIKHGGGKRCQKLNCTKSAEGQ 196
GC K A+G TDFCI H K+A+G+S CIKHGGG+RC+ C SA+
Sbjct: 223 DGCVKGAQGNTDFCIGHGGGRRCKFEGCGKSAQGRSDYCIKHGGGRRCKFQGCATSAKWG 282
Query: 197 SGFCIAH 203
FC H
Sbjct: 283 MDFCSLH 289
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/93 (45%), Positives = 56/93 (60%)
Query: 61 PQSPVTSTSGVVSFQQRCNSTKICSQPGCAKGARGSSGRCIAHGGGRRCQREGCKKGAEG 120
P + S+ G+ R + C GC KGA+G++ CI HGGGRRC+ EGC K A+G
Sbjct: 197 PNAACGSSQGLTDRCVRHGGGRRCRFDGCVKGAQGNTDFCIGHGGGRRCKFEGCGKSAQG 256
Query: 121 KTIFCKAHGGGRRCEHLGCTKSAEGRTDFCIAH 153
++ +C HGGGRRC+ GC SA+ DFC H
Sbjct: 257 RSDYCIKHGGGRRCKFQGCATSAKWGMDFCSLH 289
>Os11g0223400 Conserved hypothetical protein
Length = 406
Score = 162 bits (410), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 100/223 (44%), Positives = 120/223 (53%), Gaps = 10/223 (4%)
Query: 170 GKSGLCIKHGGGKRCQKLNCTKSAEGQSGFCIAHGGGRRCKHDGCTKGAQGSTNFCKAHG 229
GK+ C HGGGKRC CTKSAE + FC+AH RRC H+GC + A+ T+FC HG
Sbjct: 125 GKTIFCRAHGGGKRCYYPGCTKSAEEHTDFCLAHIS-RRCMHEGCFRFARRKTDFCSKHG 183
Query: 230 GGKR---CTHPNCSKGAEGSTALCKAH-GGGKRCSAEGCPKSVHGGTEFCVAHGGGKRCV 285
GGK+ TH S+ AE + H GK C + GC + G T C H C
Sbjct: 184 GGKKGETETHKKSSRSAESRSGATITHVSSGKNCKSPGCTGTADGVTMLCEKHRMKMACS 243
Query: 286 VPGCTKSARGRTDCCVRHGGGKRCQFTGCSKSAQGSTDFCKAHGGG-----KRCLWXXXX 340
PGCTK A G + CVRHG GKRC+F GC+KS + STDFCK HGG C W
Sbjct: 244 FPGCTKMAWGPSAHCVRHGAGKRCKFLGCTKSTRRSTDFCKTHGGSGGADDTLCSWRGGE 303
Query: 341 XXXXXXXXTCERFARGKKGLCVAHNALVEDSRVRGGQTVGTIA 383
C+R ARG+ GLC AH+ALV D R T+ A
Sbjct: 304 SSVGGGEDKCDRIARGRSGLCAAHSALVLDDRASCDGTIAPAA 346
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.133 0.432
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 19,629,512
Number of extensions: 1003387
Number of successful extensions: 3360
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 3077
Number of HSP's successfully gapped: 23
Length of query: 463
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 359
Effective length of database: 11,605,545
Effective search space: 4166390655
Effective search space used: 4166390655
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 158 (65.5 bits)