Os06g0523100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os06g0523100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 50.91 | 0.335 | 12.7 | -0.304 | 0.579 | -0.802 | 0.723 | -0.319 | -0.45 | 6.94 | 13.33 | 75 | -- | -- |
| 51.23 | 0.333 | 12.7 | -0.305 | 0.587 | -0.737 | 0.907 | -- | -0.447 | 7.58 | 13.83 | 75 | -- | -- |
| 52.13 | 0.336 | 12.7 | -0.294 | 0.581 | -0.83 | -- | -0.454 | -0.454 | 6.65 | 13.49 | 75 | -- | -- |
| 53.24 | 0.34 | 12.7 | -0.29 | 0.579 | -0.847 | -- | -- | -0.456 | 6.58 | 14.1 | 75 | -- | -- |
| 62.72 | 0.371 | 12.7 | -0.271 | -- | -0.872 | -- | -0.45 | -0.405 | -- | 10.82 | 37 | -- | -- |
| 62.24 | 0.37 | 12.7 | -0.303 | 1.09 | -- | 0.799 | -- | -0.401 | 10.3 | -- | -- | -- | -- |
| 64.82 | 0.377 | 12.7 | -0.271 | 1.08 | -- | -- | -- | -0.399 | 10.4 | -- | -- | -- | -- |
| 63.85 | 0.374 | 12.7 | -0.265 | -- | -0.881 | -- | -- | -0.401 | -- | 11.78 | 17 | -- | -- |
| 55.42 | 0.347 | 12.7 | -- | 0.572 | -0.844 | -- | -- | -0.423 | 6.57 | 13.14 | 75 | -- | -- |
| 136.58 | 0.546 | 12.7 | -0.289 | -- | -- | -- | -- | -0.403 | -- | -- | -- | -- | -- |
| 66.76 | 0.382 | 12.7 | -- | 1.09 | -- | -- | -- | -0.369 | 10.4 | -- | -- | -- | -- |
| 65.41 | 0.377 | 12.7 | -- | -- | -0.886 | -- | -- | -0.381 | -- | 11.42 | 8 | -- | -- |
| 138.78 | 0.55 | 12.7 | -- | -- | -- | -- | -- | -0.371 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 49.02 | radiation | 10 | 90 | < th | dose dependent | sin | 1 | NA |
| 2 | 49.28 | radiation | 10 | 90 | < th | dose dependent | rect. | 1 | 22 |
| 11 | 50.21 | radiation | 20 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 16 | 50.46 | humidity | 90 | 270 | < th | dose independent | rect. | 20 | 4 |
| 22 | 50.78 | humidity | 50 | 10 | > th | dose dependent | rect. | 1 | 22 |
| 24 | 50.79 | radiation | 10 | 90 | < th | dose dependent | rect. | 3 | 18 |
| 28 | 50.86 | radiation | 10 | 90 | < th | dose independent | rect. | 1 | 22 |
| 43 | 51.11 | radiation | 20 | 90 | < th | dose dependent | rect. | 1 | 13 |
| 46 | 51.16 | radiation | 20 | 90 | < th | dose dependent | rect. | 11 | 23 |
| 50 | 51.20 | radiation | 1 | 90 | > th | dose independent | sin | 0 | NA |
| 72 | 51.41 | radiation | 10 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 78 | 51.46 | radiation | 1 | 90 | < th | dose independent | sin | 0 | NA |
| 81 | 51.48 | radiation | 20 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 86 | 51.52 | radiation | 10 | 90 | < th | dose dependent | no | NA | NA |
| 110 | 51.69 | radiation | 10 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 113 | 51.73 | radiation | 20 | 30 | < th | dose dependent | rect. | 3 | 12 |
| 169 | 52.09 | humidity | 50 | 10 | > th | dose dependent | rect. | 3 | 18 |
| 177 | 52.14 | radiation | 10 | 90 | < th | dose independent | rect. | 3 | 18 |
| 210 | 52.31 | radiation | 10 | 90 | < th | dose dependent | rect. | 3 | 14 |
| 215 | 52.33 | radiation | 20 | 90 | < th | dose dependent | rect. | 1 | 16 |
| 255 | 52.46 | radiation | 20 | 90 | < th | dose dependent | rect. | 7 | 23 |
| 271 | 52.54 | humidity | 50 | 30 | > th | dose dependent | rect. | 1 | 14 |
| 296 | 52.65 | radiation | 10 | 90 | < th | dose independent | rect. | 1 | 13 |
| 328 | 52.78 | humidity | 80 | 10 | > th | dose independent | rect. | 1 | 21 |
| 410 | 53.06 | atmosphere | 1010 | 270 | < th | dose independent | rect. | 24 | 20 |
| 432 | 53.12 | radiation | 20 | 90 | < th | dose dependent | rect. | 1 | 10 |
| 437 | 53.14 | humidity | 50 | 10 | > th | dose dependent | rect. | 3 | 12 |
| 451 | 53.18 | temperature | 25 | 270 | < th | dose independent | rect. | 24 | 6 |
| 457 | 53.19 | humidity | 90 | 90 | < th | dose independent | rect. | 21 | 21 |
| 489 | 53.26 | radiation | 10 | 90 | < th | dose dependent | rect. | 15 | 19 |
| 490 | 53.27 | radiation | 10 | 90 | < th | dose independent | rect. | 1 | 16 |
| 500 | 53.28 | radiation | 10 | 90 | > th | dose independent | rect. | 15 | 23 |
| 510 | 53.30 | humidity | 80 | 10 | > th | dose independent | rect. | 3 | 19 |
| 542 | 53.39 | radiation | 10 | 10 | < th | dose dependent | rect. | 5 | 17 |
| 587 | 53.48 | radiation | 10 | 90 | < th | dose independent | rect. | 3 | 11 |
| 650 | 53.59 | radiation | 10 | 90 | > th | dose independent | rect. | 17 | 23 |
| 673 | 53.63 | radiation | 20 | 30 | < th | dose dependent | rect. | 3 | 8 |
| 697 | 53.68 | atmosphere | 995 | 270 | > th | dose independent | rect. | 24 | 20 |
| 704 | 53.69 | radiation | 10 | 90 | < th | dose independent | rect. | 11 | 23 |
| 759 | 53.77 | radiation | 10 | 90 | < th | dose independent | rect. | 7 | 23 |
| 778 | 53.80 | radiation | 10 | 90 | > th | dose independent | no | NA | NA |
| 779 | 53.80 | radiation | 10 | 90 | > th | dose independent | rect. | 6 | 12 |
| 866 | 53.82 | wind | 1 | 270 | > th | dose independent | rect. | 20 | 4 |
| 892 | 53.83 | atmosphere | 1010 | 270 | < th | dose independent | rect. | 10 | 10 |
| 927 | 53.88 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 6 |
| 936 | 53.89 | radiation | 10 | 90 | < th | dose independent | rect. | 3 | 14 |
| 949 | 53.90 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 7 |
| 963 | 53.92 | humidity | 80 | 10 | > th | dose independent | rect. | 1 | 14 |
| 974 | 53.93 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 7 |
| 975 | 53.93 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 24 | 7 |
| 977 | 53.93 | radiation | 10 | 10 | > th | dose independent | rect. | 15 | 23 |
| 988 | 53.95 | radiation | 20 | 30 | < th | dose independent | rect. | 1 | 9 |
| 993 | 53.96 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 2 |