BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0523100 Os06g0523100|AK062190
(463 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G64140.1 | chr1:23804069-23806009 REVERSE LENGTH=647 433 e-122
AT5G64550.1 | chr5:25801794-25803698 REVERSE LENGTH=635 419 e-117
AT5G09670.2 | chr5:2996109-2997749 REVERSE LENGTH=547 409 e-114
AT4G12020.2 | chr4:7201656-7209469 FORWARD LENGTH=1896 277 7e-75
>AT1G64140.1 | chr1:23804069-23806009 REVERSE LENGTH=647
Length = 646
Score = 433 bits (1114), Expect = e-122, Method: Compositional matrix adjust.
Identities = 243/404 (60%), Positives = 281/404 (69%), Gaps = 28/404 (6%)
Query: 60 TPQSPVTSTSGVVSFQQ----RCNSTKICSQPGCAKGARGSSGRCIAHGGGRRCQREGCK 115
TP S T TSG+ + +S+K+C GC KGARG+SGRCI+HGGGRRCQ+ GC
Sbjct: 231 TPISSGTCTSGLSQQLKPQLKNSSSSKLCQVEGCHKGARGASGRCISHGGGRRCQKHGCH 290
Query: 116 KGAEGKTIFCKAHGGGRRCEHLGCTKSAEGRTDFCIAHXXXXXXXXXXXXKAARGKSGLC 175
KGAEG+T++CKAHGGGRRCE LGCTKSAEGRTDFCIAH +AARG+SGLC
Sbjct: 291 KGAEGRTVYCKAHGGGRRCEFLGCTKSAEGRTDFCIAHGGGRRCSHEDCTRAARGRSGLC 350
Query: 176 IKHGGGKRCQKLNCTKSAEGQSGFCIAHGGGRRCKHDGCTKGAQGSTNFCKAHGGGKRCT 235
I+HGGGKRCQ+ NCTKSAEG SG CI+HGGGRRC+ +GCTKGAQGST FCKAHGGGKRCT
Sbjct: 351 IRHGGGKRCQRENCTKSAEGLSGLCISHGGGRRCQSNGCTKGAQGSTMFCKAHGGGKRCT 410
Query: 236 HPNCSKGAEGSTALCKAHGGGKRCSAEG---CPKSVHGGTEFCVAHGGGKRCVVPGCTKS 292
H C+KGAEGST CK HGGGKRC+ +G C KSVHGGT FCVAHGGGKRC VP CTKS
Sbjct: 411 HSGCTKGAEGSTPFCKGHGGGKRCAFQGDDPCSKSVHGGTNFCVAHGGGKRCAVPECTKS 470
Query: 293 ARGRTDCCVRHGGGKRCQFTGCSKSAQGSTDFCKAHGGGKRCLWXXXXXXXXXXXXT--C 350
ARGRTD CVRHGGGKRCQ GC KSAQGSTDFCKAHGGGKRC W + C
Sbjct: 471 ARGRTDFCVRHGGGKRCQSEGCGKSAQGSTDFCKAHGGGKRCAWGQPETEYAGQSSSGPC 530
Query: 351 ERFARGKKGLCVAHNALVEDSRVRGGQTVGTIALP-----------GSTGADSDVSHGTL 399
FARGK GLC HN+LV+D+RV GG T+ + + D++ T+
Sbjct: 531 TSFARGKTGLCALHNSLVQDNRVHGGMTITSESQEPRVSSSETENEEEFSGSQDMNMDTM 590
Query: 400 PGNSFNFGETFAANTKQALHHVQSPV---PEGRVHGGNI-AAML 439
S T + T L+ ++ + PEGRVHGG++ AML
Sbjct: 591 KARS----ATGSPETDVDLNEYEAGLGLAPEGRVHGGSLMMAML 630
>AT5G64550.1 | chr5:25801794-25803698 REVERSE LENGTH=635
Length = 634
Score = 419 bits (1076), Expect = e-117, Method: Compositional matrix adjust.
Identities = 239/388 (61%), Positives = 274/388 (70%), Gaps = 21/388 (5%)
Query: 3 SVPTVDEGSTSARWKSGGKLLPYLYQSRNNTGHFSSKELPGSSNQSQDLAPLPKMIQTPQ 62
S VDEGSTSAR +SGG + L+ R S+ S+N D A ++ +
Sbjct: 133 SQAAVDEGSTSAR-RSGGYMPSLLFAPRTENVRKPSRMQECSTNCGTD-AYNSQLSHESE 190
Query: 63 SPVTSTS----GVVSFQQRCNSTKICSQPGCAKGARGSSGRCIAHGGGRRCQREGCKKGA 118
V++ S S QQR ++ K C GC KGARG+SG CI HGGG+RCQ+ GC KGA
Sbjct: 191 FSVSAFSDRSASATSSQQRMSNPKKCKFMGCVKGARGASGLCIGHGGGQRCQKLGCNKGA 250
Query: 119 EGKTIFCKAHGGGRRCEHLGCTKSAEGRTDFCIAHXXXXXXXXXXX-XKAARGKSGLCIK 177
E KT FCKAHGGG+RC+HLGCTKSAEG+TD CI+H KAARGKSGLCIK
Sbjct: 251 ESKTTFCKAHGGGKRCQHLGCTKSAEGKTDLCISHGGGRRCGFPEGCAKAARGKSGLCIK 310
Query: 178 HGGGKRCQKLNCTKSAEGQSGFCIAHGGGRRCKHDGCTKGAQGSTNFCKAHGGGKRCTHP 237
HGGGKRC+ +CT+SAEGQ+G CI+HGGGRRC+ GCTKGAQGSTN+CKAHGGGKRC
Sbjct: 311 HGGGKRCRIESCTRSAEGQAGLCISHGGGRRCQSSGCTKGAQGSTNYCKAHGGGKRCIFA 370
Query: 238 NCSKGAEGSTALCKAHGGGKRCSAEG---CPKSVHGGTEFCVAHGGGKRCVVPGCTKSAR 294
C+KGAEGST LCKAHGGGKRC +G CPKSVHGGT FCVAHGGGKRCVV GCTKSAR
Sbjct: 371 GCTKGAEGSTPLCKAHGGGKRCMFDGGGICPKSVHGGTSFCVAHGGGKRCVVAGCTKSAR 430
Query: 295 GRTDCCVRHGGGKRCQFTGCSKSAQGSTDFCKAHGGGKRCLWXXXXXXXXXXXXTCERFA 354
GRTDCCV+HGGGKRC+ GC KSAQGSTDFCKAHGGGKRC W CE+FA
Sbjct: 431 GRTDCCVKHGGGKRCKSDGCEKSAQGSTDFCKAHGGGKRCSWGGDWK--------CEKFA 482
Query: 355 RGKKGLCVAHNALVEDSRVRGGQTVGTI 382
RGK GLC AHN++ +D + G VG I
Sbjct: 483 RGKSGLCAAHNSMSQD---KAGSKVGLI 507
>AT5G09670.2 | chr5:2996109-2997749 REVERSE LENGTH=547
Length = 546
Score = 409 bits (1051), Expect = e-114, Method: Compositional matrix adjust.
Identities = 256/482 (53%), Positives = 298/482 (61%), Gaps = 66/482 (13%)
Query: 4 VPTVDEGSTSARWKSGGKLLPYLYQSRNNTGHFSSKELPGSSNQSQDLAPLPKMI--QTP 61
+P VDEGS+SA+ +SGG +P L N + +Q Q L I Q
Sbjct: 88 IPVVDEGSSSAK-RSGG-YMPSLLLDPNVK----------NPSQIQQLKDFGTGIHSQVS 135
Query: 62 QSPVTSTSGVVSFQQRCNSTKICSQPGCAKGARGSSGRCIAHGGGRRCQREGCKKGAEGK 121
Q P T V QQR ++ + C GC KGARG+SG CI+HGGG+RCQ+ GC KGAE K
Sbjct: 136 QEPSPYTEFYV--QQRTSNPRKCKFMGCVKGARGASGLCISHGGGQRCQKPGCNKGAESK 193
Query: 122 TIFCKAHGGGRRCEHLGCTKSAEGRTDFCIAHXXXXXXXXXXX-XKAARGKSGLCIKHGG 180
T FCK HGGG+RCEHLGCTKSAEG+TDFCI+H KAARG+SGLCIKHGG
Sbjct: 194 TTFCKTHGGGKRCEHLGCTKSAEGKTDFCISHGGGRRCEFLEGCDKAARGRSGLCIKHGG 253
Query: 181 GKRCQKLNCTKSAEGQSGFCIAHGGGRRCKH-DGCTKGAQGSTNFCKAHGGGKRCTHPNC 239
GKRC +CT+SAEGQ+G CI+HGGG+RC++ GC KGAQGSTN+CKAHGGGKRC C
Sbjct: 254 GKRCNIEDCTRSAEGQAGLCISHGGGKRCQYFSGCEKGAQGSTNYCKAHGGGKRCIFSGC 313
Query: 240 SKGAEGSTALCKAHGGGKRCSAEG---CPKSVHGGTEFCVAHGGGKRCVVPGCTKSARGR 296
SKGAEGST LCKAHGGGKRC A+G C KSVHGGT FCVAHGGGKRCVV GCTKSARGR
Sbjct: 314 SKGAEGSTPLCKAHGGGKRCLADGGGICSKSVHGGTNFCVAHGGGKRCVVVGCTKSARGR 373
Query: 297 TDCCVRHGGGKRCQFTGCSKSAQGSTDFCKAHGGGKRCLWXXXXXXXXXXXXTCERFARG 356
TD CV+HGGGKRC+ C KSAQGSTDFCKAHGGGKRC W CE+FARG
Sbjct: 374 TDSCVKHGGGKRCKIIDCEKSAQGSTDFCKAHGGGKRCSW---------GDGKCEKFARG 424
Query: 357 KKGLCVAHNALVEDSRVRG------------GQTVGTIALPGSTGADSDVSHGTLPGNSF 404
K GLC AHN ++ G G G+ + +GA S VS T
Sbjct: 425 KSGLCAAHNTIMSRENKDGSKSGLIGPGLFSGLVFGSTSDHSQSGA-SAVSDCTDSVERI 483
Query: 405 NFGETFAANTKQAL-------HHVQSP--------------VPEGRVHGGN-IAAMLANS 442
F E N K + ++SP VPE RVHGG + ++L S
Sbjct: 484 QF-ENRQKNKKMMIPMQVLVPSSMKSPSNSHEGETNIYDFMVPEERVHGGGLVMSLLGGS 542
Query: 443 MD 444
+D
Sbjct: 543 ID 544
>AT4G12020.2 | chr4:7201656-7209469 FORWARD LENGTH=1896
Length = 1895
Score = 277 bits (709), Expect = 7e-75, Method: Composition-based stats.
Identities = 129/246 (52%), Positives = 159/246 (64%), Gaps = 27/246 (10%)
Query: 55 PKMIQTPQSPVTSTSGVVSFQQRCNSTKICSQPGCAKGARGSSGRCIAHGGGRRCQREGC 114
P M TP P++S SG+ +S+K+C GC KGAR +SGRCI+HGGGRRCQ+ C
Sbjct: 66 PGMAATP--PISSGSGLSQQLNNSSSSKLCQVEGCQKGARDASGRCISHGGGRRCQKPDC 123
Query: 115 KKGAEGKTIFCKAHGGGRRCEHLGCTKSAEGRTDFCIAHXXXXXXXXXXXXKAARGKSGL 174
+KGAEGKT++CKAHGGGRRCE+LGCTK AEG TDFCIA
Sbjct: 124 QKGAEGKTVYCKAHGGGRRCEYLGCTKGAEGSTDFCIA---------------------- 161
Query: 175 CIKHGGGKRCQKLNCTKSAEGQSGFCIAHGGGRRCKHDGCTKGAQGSTNFCKAHGGGKRC 234
HGGG+RC +CT+SA G++ FC+ HGGG RCK GC K A G FC+AHGGGK+C
Sbjct: 162 ---HGGGRRCNHEDCTRSAWGRTEFCVKHGGGARCKTYGCGKSASGPLPFCRAHGGGKKC 218
Query: 235 THPNCSKGAEGSTALCKAHGGGKRCSAEGCPKSVHGGTEFCVAHGGGKRCVVPGCTKSAR 294
+H +C+ A G + LC HGGGKRC E C KS G + C++HGGG+RC GCTK A+
Sbjct: 219 SHEDCTGFARGRSGLCLMHGGGKRCQRENCTKSAEGLSGLCISHGGGRRCQSIGCTKGAK 278
Query: 295 GRTDCC 300
G C
Sbjct: 279 GSKMFC 284
Score = 238 bits (606), Expect = 6e-63, Method: Composition-based stats.
Identities = 110/219 (50%), Positives = 130/219 (59%), Gaps = 25/219 (11%)
Query: 109 CQREGCKKGAEGKTIFCKAHGGGRRCEHLGCTKSAEGRTDFCIAHXXXXXXXXXXXXKAA 168
CQ EGC+KGA + C +HGGGRRC+ C K AEG+T +C A
Sbjct: 93 CQVEGCQKGARDASGRCISHGGGRRCQKPDCQKGAEGKTVYCKA---------------- 136
Query: 169 RGKSGLCIKHGGGKRCQKLNCTKSAEGQSGFCIAHGGGRRCKHDGCTKGAQGSTNFCKAH 228
HGGG+RC+ L CTK AEG + FCIAHGGGRRC H+ CT+ A G T FC H
Sbjct: 137 ---------HGGGRRCEYLGCTKGAEGSTDFCIAHGGGRRCNHEDCTRSAWGRTEFCVKH 187
Query: 229 GGGKRCTHPNCSKGAEGSTALCKAHGGGKRCSAEGCPKSVHGGTEFCVAHGGGKRCVVPG 288
GGG RC C K A G C+AHGGGK+CS E C G + C+ HGGGKRC
Sbjct: 188 GGGARCKTYGCGKSASGPLPFCRAHGGGKKCSHEDCTGFARGRSGLCLMHGGGKRCQREN 247
Query: 289 CTKSARGRTDCCVRHGGGKRCQFTGCSKSAQGSTDFCKA 327
CTKSA G + C+ HGGG+RCQ GC+K A+GS FCKA
Sbjct: 248 CTKSAEGLSGLCISHGGGRRCQSIGCTKGAKGSKMFCKA 286
Score = 234 bits (596), Expect = 1e-61, Method: Composition-based stats.
Identities = 106/198 (53%), Positives = 129/198 (65%), Gaps = 11/198 (5%)
Query: 166 KAARGKSGLCIKHGGGKRCQKLNCTKSAEGQSGFCIAHGGGRRCKHDGCTKGAQGSTNFC 225
K AR SG CI HGGG+RCQK +C K AEG++ +C AHGGGRRC++ GCTKGA+GST+FC
Sbjct: 100 KGARDASGRCISHGGGRRCQKPDCQKGAEGKTVYCKAHGGGRRCEYLGCTKGAEGSTDFC 159
Query: 226 KAHGGGKRCTHPNCSKGAEGSTALCKAHGGGKRCSAEGCPKSVHGGTEFCVAHGGGKRCV 285
AHGGG+RC H +C++ A G T C HGGG RC GC KS G FC AHGGGK+C
Sbjct: 160 IAHGGGRRCNHEDCTRSAWGRTEFCVKHGGGARCKTYGCGKSASGPLPFCRAHGGGKKCS 219
Query: 286 VPGCTKSARGRTDCCVRHGGGKRCQFTGCSKSAQGSTDFCKAHGGGKRCLWXXXXXXXXX 345
CT ARGR+ C+ HGGGKRCQ C+KSA+G + C +HGGG+RC
Sbjct: 220 HEDCTGFARGRSGLCLMHGGGKRCQRENCTKSAEGLSGLCISHGGGRRC----------- 268
Query: 346 XXXTCERFARGKKGLCVA 363
C + A+G K C A
Sbjct: 269 QSIGCTKGAKGSKMFCKA 286
Score = 202 bits (514), Expect = 3e-52, Method: Composition-based stats.
Identities = 94/183 (51%), Positives = 111/183 (60%), Gaps = 11/183 (6%)
Query: 182 KRCQKLNCTKSAEGQSGFCIAHGGGRRCKHDGCTKGAQGSTNFCKAHGGGKRCTHPNCSK 241
K CQ C K A SG CI+HGGGRRC+ C KGA+G T +CKAHGGG+RC + C+K
Sbjct: 91 KLCQVEGCQKGARDASGRCISHGGGRRCQKPDCQKGAEGKTVYCKAHGGGRRCEYLGCTK 150
Query: 242 GAEGSTALCKAHGGGKRCSAEGCPKSVHGGTEFCVAHGGGKRCVVPGCTKSARGRTDCCV 301
GAEGST C AHGGG+RC+ E C +S G TEFCV HGGG RC GC KSA G C
Sbjct: 151 GAEGSTDFCIAHGGGRRCNHEDCTRSAWGRTEFCVKHGGGARCKTYGCGKSASGPLPFCR 210
Query: 302 RHGGGKRCQFTGCSKSAQGSTDFCKAHGGGKRCLWXXXXXXXXXXXXTCERFARGKKGLC 361
HGGGK+C C+ A+G + C HGGGKRC C + A G GLC
Sbjct: 211 AHGGGKKCSHEDCTGFARGRSGLCLMHGGGKRC-----------QRENCTKSAEGLSGLC 259
Query: 362 VAH 364
++H
Sbjct: 260 ISH 262
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.133 0.432
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 11,193,807
Number of extensions: 516413
Number of successful extensions: 1305
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 1127
Number of HSP's successfully gapped: 8
Length of query: 463
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 361
Effective length of database: 8,310,137
Effective search space: 2999959457
Effective search space used: 2999959457
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 113 (48.1 bits)