Os04g0458200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0458200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 47.61 | 0.324 | 13.6 | 1.27 | 0.923 | -0.716 | 0.0259 | 1.99 | 0.45 | 6.67 | 20.2 | 3965 | -- | -- |
| 49.47 | 0.328 | 13.6 | 1.14 | 0.919 | -0.867 | -0.0745 | -- | 0.495 | 6.73 | 16.6 | 20810 | -- | -- |
| 47.61 | 0.321 | 13.6 | 1.27 | 0.923 | -0.717 | -- | 1.99 | 0.45 | 6.67 | 20.2 | 3965 | -- | -- |
| 49.07 | 0.326 | 13.6 | 1.21 | 0.904 | -0.971 | -- | -- | 0.526 | 6.88 | 14.13 | 20768 | -- | -- |
| 84.84 | 0.429 | 13.6 | 1.11 | -- | -0.884 | -- | 1.93 | 0.387 | -- | 24.4 | 1997 | -- | -- |
| 61.61 | 0.368 | 13.7 | 0.424 | 0.924 | -- | 0.0205 | -- | 0.161 | 6.93 | -- | -- | -- | -- |
| 61.61 | 0.368 | 13.7 | 0.424 | 0.925 | -- | -- | -- | 0.161 | 6.93 | -- | -- | -- | -- |
| 89.25 | 0.44 | 13.7 | 0.692 | -- | -0.732 | -- | -- | 0.249 | -- | 25.35 | 2023 | -- | -- |
| 61.9 | 0.366 | 13.7 | -- | 0.901 | -0.477 | -- | -- | 0.185 | 6.85 | 11.66 | 1857 | -- | -- |
| 106.48 | 0.482 | 13.7 | 0.443 | -- | -- | -- | -- | 0.178 | -- | -- | -- | -- | -- |
| 66.35 | 0.381 | 13.7 | -- | 0.929 | -- | -- | -- | 0.113 | 6.9 | -- | -- | -- | -- |
| 99.85 | 0.465 | 13.7 | -- | -- | -0.594 | -- | -- | 0.174 | -- | 24.9 | 2015 | -- | -- |
| 111.66 | 0.493 | 13.7 | -- | -- | -- | -- | -- | 0.129 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 43.78 | humidity | 90 | 14400 | > th | dose dependent | rect. | 22 | 2 |
| 6 | 44.01 | humidity | 90 | 14400 | > th | dose dependent | rect. | 17 | 10 |
| 7 | 44.02 | humidity | 90 | 14400 | > th | dose dependent | rect. | 18 | 8 |
| 9 | 44.03 | humidity | 90 | 14400 | > th | dose dependent | rect. | 15 | 12 |
| 19 | 44.24 | humidity | 90 | 14400 | > th | dose dependent | sin | 14 | NA |
| 30 | 44.38 | humidity | 90 | 14400 | > th | dose dependent | rect. | 15 | 17 |
| 33 | 44.42 | humidity | 90 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 74 | 44.63 | temperature | 20 | 1440 | > th | dose independent | rect. | 24 | 7 |
| 81 | 44.67 | temperature | 20 | 1440 | < th | dose independent | rect. | 24 | 7 |
| 99 | 44.72 | humidity | 90 | 14400 | > th | dose dependent | rect. | 6 | 23 |
| 106 | 44.74 | humidity | 90 | 14400 | > th | dose dependent | rect. | 18 | 22 |
| 113 | 44.75 | humidity | 90 | 14400 | > th | dose dependent | rect. | 20 | 23 |
| 134 | 44.80 | humidity | 90 | 14400 | > th | dose dependent | no | NA | NA |
| 163 | 44.87 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 3 |
| 164 | 44.88 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 3 |
| 167 | 44.89 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 170 | 44.90 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 249 | 45.13 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 308 | 45.39 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 345 | 45.57 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 5 |
| 380 | 45.71 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 385 | 45.73 | temperature | 15 | 1440 | > th | dose dependent | rect. | 3 | 1 |
| 388 | 45.74 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 404 | 45.81 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 1 |
| 409 | 45.82 | humidity | 90 | 14400 | > th | dose independent | rect. | 18 | 10 |
| 435 | 45.92 | humidity | 90 | 14400 | > th | dose independent | rect. | 18 | 14 |
| 453 | 45.98 | humidity | 90 | 14400 | > th | dose independent | rect. | 12 | 16 |
| 464 | 46.02 | humidity | 90 | 14400 | > th | dose independent | rect. | 12 | 19 |
| 465 | 46.02 | temperature | 20 | 1440 | > th | dose dependent | rect. | 5 | 4 |
| 466 | 46.03 | humidity | 90 | 14400 | > th | dose independent | sin | 13 | NA |
| 471 | 46.04 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 521 | 46.10 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 8 |
| 559 | 46.19 | humidity | 90 | 14400 | > th | dose independent | rect. | 21 | 3 |
| 619 | 46.27 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 11 |
| 643 | 46.32 | humidity | 90 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 668 | 46.34 | humidity | 90 | 14400 | > th | dose independent | rect. | 18 | 20 |
| 669 | 46.34 | wind | 3 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 682 | 46.35 | humidity | 90 | 14400 | > th | dose dependent | rect. | 3 | 14 |
| 685 | 46.36 | humidity | 80 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 690 | 46.36 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 13 |
| 763 | 46.45 | humidity | 70 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 764 | 46.45 | humidity | 80 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 822 | 46.53 | humidity | 90 | 14400 | > th | dose independent | rect. | 6 | 22 |
| 838 | 46.54 | humidity | 80 | 14400 | > th | dose dependent | rect. | 20 | 1 |
| 861 | 46.57 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 4 |
| 890 | 46.59 | humidity | 90 | 14400 | > th | dose independent | rect. | 20 | 23 |
| 901 | 46.60 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 918 | 46.62 | humidity | 90 | 14400 | > th | dose independent | no | NA | NA |
| 941 | 46.64 | temperature | 30 | 1440 | < th | dose dependent | rect. | 5 | 1 |
| 950 | 46.66 | humidity | 90 | 14400 | > th | dose independent | rect. | 22 | 1 |
| 978 | 46.69 | humidity | 90 | 14400 | > th | dose independent | rect. | 1 | 23 |
| 982 | 46.70 | wind | 3 | 43200 | < th | dose independent | rect. | 8 | 1 |