BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0458200 Os04g0458200|AK101398
(631 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G64550.1 | chr5:25801794-25803698 REVERSE LENGTH=635 553 e-157
AT5G09670.2 | chr5:2996109-2997749 REVERSE LENGTH=547 543 e-154
AT1G64140.1 | chr1:23804069-23806009 REVERSE LENGTH=647 419 e-117
AT4G12020.2 | chr4:7201656-7209469 FORWARD LENGTH=1896 229 3e-60
>AT5G64550.1 | chr5:25801794-25803698 REVERSE LENGTH=635
Length = 634
Score = 553 bits (1425), Expect = e-157, Method: Compositional matrix adjust.
Identities = 326/582 (56%), Positives = 384/582 (65%), Gaps = 54/582 (9%)
Query: 29 MVNLGKSTPHMDCLGSA---MANYGHGNQNIQCIDSITTRDDGCRLVLGLGPTPNFYSAE 85
+ N G + + CLGS+ + H N + C D D GCRLVLGLGPTP Y
Sbjct: 19 LDNFGDTALSLKCLGSSAGRLIGSSHHNHKL-CSDVSNCPDGGCRLVLGLGPTPPSYYYN 77
Query: 86 CQPTGVDKLKEAPSLSGQGLTITDPGTLRLG---LQMDVSQTIQ-PLQAPDGTVHSFTVV 141
+ + A S S Q L+ L+LG + MD ++ L T S V
Sbjct: 78 VRVNDNNNKGSASSGSVQELSSGGNSILQLGPPAVTMDTFSGLEGSLLTYADTNVSQAAV 137
Query: 142 DEASASPSVRSIGGYMPSLLFAPRSGSSAVNETHEAETQDSLDLTHSDNDNTQHVQHHLQ 201
DE S S R GGYMPSLLFAPR+ N + Q+ +D N+Q + H +
Sbjct: 138 DEGSTS--ARRSGGYMPSLLFAPRT----ENVRKPSRMQECSTNCGTDAYNSQ-LSHESE 190
Query: 202 LSPEPSAMTDTSFGXXXXXXXXXXXXEQRNHPRHPKKCRFKGCSKGARGASGLCIAHGGG 261
S SA +D S +QR +PKKC+F GC KGARGASGLCI HGGG
Sbjct: 191 FSV--SAFSDRS--------ASATSSQQR--MSNPKKCKFMGCVKGARGASGLCIGHGGG 238
Query: 262 QRCHKPGCHKGAESSTAYCKAHGGGRRCEELGCTKSAEGKTDYCIAHGGGRRCEH-DGCP 320
QRC K GC+KGAES T +CKAHGGG+RC+ LGCTKSAEGKTD CI+HGGGRRC +GC
Sbjct: 239 QRCQKLGCNKGAESKTTFCKAHGGGKRCQHLGCTKSAEGKTDLCISHGGGRRCGFPEGCA 298
Query: 321 KAARGKSGRCIKHGGGKRCTVQGCIRSAEGKAGLCISHGGGRRCQFPDCSKGAQGSTLYC 380
KAARGKSG CIKHGGGKRC ++ C RSAEG+AGLCISHGGGRRCQ C+KGAQGST YC
Sbjct: 299 KAARGKSGLCIKHGGGKRCRIESCTRSAEGQAGLCISHGGGRRCQSSGCTKGAQGSTNYC 358
Query: 381 KGHGGGKRCIFDGCSKGAEGSTPLCKAHGGGKRCMFEGGGVCPKSVHGGTEYCVAHGGGK 440
K HGGGKRCIF GC+KGAEGSTPLCKAHGGGKRCMF+GGG+CPKSVHGGT +CVAHGGGK
Sbjct: 359 KAHGGGKRCIFAGCTKGAEGSTPLCKAHGGGKRCMFDGGGICPKSVHGGTSFCVAHGGGK 418
Query: 441 RCSVAGCTKSARGRTDCCVKHGGGKRCKVDNCSKSAQGSTDFCKAHGGGKRCTWG--TGC 498
RC VAGCTKSARGRTDCCVKHGGGKRCK D C KSAQGSTDFCKAHGGGKRC+WG C
Sbjct: 419 RCVVAGCTKSARGRTDCCVKHGGGKRCKSDGCEKSAQGSTDFCKAHGGGKRCSWGGDWKC 478
Query: 499 EKFARGRSGLCAAHGTLAAKQQERDAANNGAGMIPPGLFSGIVTVA-------ATSSMTN 551
EKFARG+SGLCAAH +++ +D A + G+I PGLF G+V+ + T++ T
Sbjct: 479 EKFARGKSGLCAAHNSMS-----QDKAGSKVGLIGPGLFRGLVSTSLQTTTTATTTTTTT 533
Query: 552 EYSSSGISTASDCDGTV------------RSQAMMIPPQVLV 581
++S SG+S SDC ++ + Q +MIP QVLV
Sbjct: 534 DHSQSGVSAVSDCMDSIDRPLPPLHHQPEKRQKLMIPMQVLV 575
>AT5G09670.2 | chr5:2996109-2997749 REVERSE LENGTH=547
Length = 546
Score = 543 bits (1398), Expect = e-154, Method: Compositional matrix adjust.
Identities = 324/595 (54%), Positives = 384/595 (64%), Gaps = 80/595 (13%)
Query: 32 LGKSTPHMDCLGSAMANYGHGNQNIQCIDSITTRDDGCRLVLGLGPTPNFYSAECQPTGV 91
+G + + CLG G++N C D + DDGCRLVLGLGPT Y C GV
Sbjct: 1 MGDTALSLKCLG--------GSENQFCSDVSSFTDDGCRLVLGLGPTSTSY---CFSVGV 49
Query: 92 DKLKEAPSLSGQGLTITDPGTLRLGLQMDVSQTIQPLQAPDGTVHSFTVVDEASASPSVR 151
+ + S G T D L+LG T L +G V VVDE S+S +
Sbjct: 50 NNSNKD---SASGFTQADS-VLQLGRPAVSIDTFSGLD--NGGV--IPVVDEGSSS--AK 99
Query: 152 SIGGYMPSLLFAPRSGSSAVNETHEAETQDSLDLTHSDNDNTQHVQHHLQLSPEPSAMTD 211
GGYMPSLL P N + ++ Q D H Q+S EPS T+
Sbjct: 100 RSGGYMPSLLLDP-------NVKNPSQIQQLKDFG---------TGIHSQVSQEPSPYTE 143
Query: 212 TSFGXXXXXXXXXXXXEQRNHPRHPKKCRFKGCSKGARGASGLCIAHGGGQRCHKPGCHK 271
+QR +P+KC+F GC KGARGASGLCI+HGGGQRC KPGC+K
Sbjct: 144 FYV-------------QQRTS--NPRKCKFMGCVKGARGASGLCISHGGGQRCQKPGCNK 188
Query: 272 GAESSTAYCKAHGGGRRCEELGCTKSAEGKTDYCIAHGGGRRCEH-DGCPKAARGKSGRC 330
GAES T +CK HGGG+RCE LGCTKSAEGKTD+CI+HGGGRRCE +GC KAARG+SG C
Sbjct: 189 GAESKTTFCKTHGGGKRCEHLGCTKSAEGKTDFCISHGGGRRCEFLEGCDKAARGRSGLC 248
Query: 331 IKHGGGKRCTVQGCIRSAEGKAGLCISHGGGRRCQ-FPDCSKGAQGSTLYCKGHGGGKRC 389
IKHGGGKRC ++ C RSAEG+AGLCISHGGG+RCQ F C KGAQGST YCK HGGGKRC
Sbjct: 249 IKHGGGKRCNIEDCTRSAEGQAGLCISHGGGKRCQYFSGCEKGAQGSTNYCKAHGGGKRC 308
Query: 390 IFDGCSKGAEGSTPLCKAHGGGKRCMFEGGGVCPKSVHGGTEYCVAHGGGKRCSVAGCTK 449
IF GCSKGAEGSTPLCKAHGGGKRC+ +GGG+C KSVHGGT +CVAHGGGKRC V GCTK
Sbjct: 309 IFSGCSKGAEGSTPLCKAHGGGKRCLADGGGICSKSVHGGTNFCVAHGGGKRCVVVGCTK 368
Query: 450 SARGRTDCCVKHGGGKRCKVDNCSKSAQGSTDFCKAHGGGKRCTWGTG-CEKFARGRSGL 508
SARGRTD CVKHGGGKRCK+ +C KSAQGSTDFCKAHGGGKRC+WG G CEKFARG+SGL
Sbjct: 369 SARGRTDSCVKHGGGKRCKIIDCEKSAQGSTDFCKAHGGGKRCSWGDGKCEKFARGKSGL 428
Query: 509 CAAHGTLAAKQQERDAANNGAGMIPPGLFSGIVTVAATSSMTNEYSSSGISTASDCDGTV 568
CAAH T+ +++ + + +G+I PGLFSG+V + T+++S SG S SDC +V
Sbjct: 429 CAAHNTIMSRENKDGSK---SGLIGPGLFSGLVFGS-----TSDHSQSGASAVSDCTDSV 480
Query: 569 ---------RSQAMMIPPQVLVXXXXXXXXXX---EPTVHGGREGGCAVPEGRVH 611
+++ MMIP QVLV E ++ VPE RVH
Sbjct: 481 ERIQFENRQKNKKMMIPMQVLVPSSMKSPSNSHEGETNIY-----DFMVPEERVH 530
>AT1G64140.1 | chr1:23804069-23806009 REVERSE LENGTH=647
Length = 646
Score = 419 bits (1076), Expect = e-117, Method: Compositional matrix adjust.
Identities = 240/449 (53%), Positives = 286/449 (63%), Gaps = 36/449 (8%)
Query: 87 QPTGVDKLKEAPSLSGQGLTITDPG-TLRLGL------QMDVSQTIQPLQAPDGTVHSFT 139
+PT +K + +L +GL + P L L L Q +++ Q
Sbjct: 117 KPTASNK--KPANLKMKGLQVPSPKFDLELSLSGGGSCQSEITAVQQHANRFQSLADMLR 174
Query: 140 VVDEASASPSVRSIGGYMPSLLFAPRSGSSAVNETHEAETQDSLDLTHSDNDNTQHVQHH 199
+E SA+ R G +P+L +S+ ET S L H + H
Sbjct: 175 ANNEESATCGWRQ-GFGLPTLQ------ASSSKET-------SSFLGHIPKNVIIPAAHV 220
Query: 200 LQLSPEPSAMTDTSFGXXXXXXXXXXXXEQRNHPRHPKKCRFKGCSKGARGASGLCIAHG 259
L+LS +A T S G + +N K C+ +GC KGARGASG CI+HG
Sbjct: 221 LELSSNTAATTPISSGTCTSGLSQQLKPQLKNSSS-SKLCQVEGCHKGARGASGRCISHG 279
Query: 260 GGQRCHKPGCHKGAESSTAYCKAHGGGRRCEELGCTKSAEGKTDYCIAHGGGRRCEHDGC 319
GG+RC K GCHKGAE T YCKAHGGGRRCE LGCTKSAEG+TD+CIAHGGGRRC H+ C
Sbjct: 280 GGRRCQKHGCHKGAEGRTVYCKAHGGGRRCEFLGCTKSAEGRTDFCIAHGGGRRCSHEDC 339
Query: 320 PKAARGKSGRCIKHGGGKRCTVQGCIRSAEGKAGLCISHGGGRRCQFPDCSKGAQGSTLY 379
+AARG+SG CI+HGGGKRC + C +SAEG +GLCISHGGGRRCQ C+KGAQGST++
Sbjct: 340 TRAARGRSGLCIRHGGGKRCQRENCTKSAEGLSGLCISHGGGRRCQSNGCTKGAQGSTMF 399
Query: 380 CKGHGGGKRCIFDGCSKGAEGSTPLCKAHGGGKRCMFEGGGVCPKSVHGGTEYCVAHGGG 439
CK HGGGKRC GC+KGAEGSTP CK HGGGKRC F+G C KSVHGGT +CVAHGGG
Sbjct: 400 CKAHGGGKRCTHSGCTKGAEGSTPFCKGHGGGKRCAFQGDDPCSKSVHGGTNFCVAHGGG 459
Query: 440 KRCSVAGCTKSARGRTDCCVKHGGGKRCKVDNCSKSAQGSTDFCKAHGGGKRCTWGT--- 496
KRC+V CTKSARGRTD CV+HGGGKRC+ + C KSAQGSTDFCKAHGGGKRC WG
Sbjct: 460 KRCAVPECTKSARGRTDFCVRHGGGKRCQSEGCGKSAQGSTDFCKAHGGGKRCAWGQPET 519
Query: 497 ---------GCEKFARGRSGLCAAHGTLA 516
C FARG++GLCA H +L
Sbjct: 520 EYAGQSSSGPCTSFARGKTGLCALHNSLV 548
>AT4G12020.2 | chr4:7201656-7209469 FORWARD LENGTH=1896
Length = 1895
Score = 229 bits (585), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 113/199 (56%), Positives = 137/199 (68%), Gaps = 3/199 (1%)
Query: 237 KKCRFKGCSKGARGASGLCIAHGGGQRCHKPGCHKGAESSTAYCKAHGGGRRCEELGCTK 296
K C+ +GC KGAR ASG CI+HGGG+RC KP C KGAE T YCKAHGGGRRCE LGCTK
Sbjct: 91 KLCQVEGCQKGARDASGRCISHGGGRRCQKPDCQKGAEGKTVYCKAHGGGRRCEYLGCTK 150
Query: 297 SAEGKTDYCIAHGGGRRCEHDGCPKAARGKSGRCIKHGGGKRCTVQGCIRSAEGKAGLCI 356
AEG TD+CIAHGGGRRC H+ C ++A G++ C+KHGGG RC GC +SA G C
Sbjct: 151 GAEGSTDFCIAHGGGRRCNHEDCTRSAWGRTEFCVKHGGGARCKTYGCGKSASGPLPFCR 210
Query: 357 SHGGGRRCQFPDCSKGAQGSTLYCKGHGGGKRCIFDGCSKGAEGSTPLCKAHGGGKRCMF 416
+HGGG++C DC+ A+G + C HGGGKRC + C+K AEG + LC +HGGG+RC
Sbjct: 211 AHGGGKKCSHEDCTGFARGRSGLCLMHGGGKRCQRENCTKSAEGLSGLCISHGGGRRCQS 270
Query: 417 EGGGVCPKSVHGGTEYCVA 435
G C K G +C A
Sbjct: 271 IG---CTKGAKGSKMFCKA 286
Score = 200 bits (508), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 103/200 (51%), Positives = 130/200 (65%), Gaps = 4/200 (2%)
Query: 312 RRCEHDGCPKAARGKSGRCIKHGGGKRCTVQGCIRSAEGKAGLCISHGGGRRCQFPDCSK 371
+ C+ +GC K AR SGRCI HGGG+RC C + AEGK C +HGGGRRC++ C+K
Sbjct: 91 KLCQVEGCQKGARDASGRCISHGGGRRCQKPDCQKGAEGKTVYCKAHGGGRRCEYLGCTK 150
Query: 372 GAQGSTLYCKGHGGGKRCIFDGCSKGAEGSTPLCKAHGGGKRCMFEGGGVCPKSVHGGTE 431
GA+GST +C HGGG+RC + C++ A G T C HGGG RC G C KS G
Sbjct: 151 GAEGSTDFCIAHGGGRRCNHEDCTRSAWGRTEFCVKHGGGARCKTYG---CGKSASGPLP 207
Query: 432 YCVAHGGGKRCSVAGCTKSARGRTDCCVKHGGGKRCKVDNCSKSAQGSTDFCKAHGGGKR 491
+C AHGGGK+CS CT ARGR+ C+ HGGGKRC+ +NC+KSA+G + C +HGGG+R
Sbjct: 208 FCRAHGGGKKCSHEDCTGFARGRSGLCLMHGGGKRCQRENCTKSAEGLSGLCISHGGGRR 267
Query: 492 CTWGTGCEKFARGRSGLCAA 511
C GC K A+G C A
Sbjct: 268 CQ-SIGCTKGAKGSKMFCKA 286
Score = 166 bits (420), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 85/152 (55%), Positives = 102/152 (67%), Gaps = 4/152 (2%)
Query: 362 RRCQFPDCSKGAQGSTLYCKGHGGGKRCIFDGCSKGAEGSTPLCKAHGGGKRCMFEGGGV 421
+ CQ C KGA+ ++ C HGGG+RC C KGAEG T CKAHGGG+RC + G
Sbjct: 91 KLCQVEGCQKGARDASGRCISHGGGRRCQKPDCQKGAEGKTVYCKAHGGGRRCEYLG--- 147
Query: 422 CPKSVHGGTEYCVAHGGGKRCSVAGCTKSARGRTDCCVKHGGGKRCKVDNCSKSAQGSTD 481
C K G T++C+AHGGG+RC+ CT+SA GRT+ CVKHGGG RCK C KSA G
Sbjct: 148 CTKGAEGSTDFCIAHGGGRRCNHEDCTRSAWGRTEFCVKHGGGARCKTYGCGKSASGPLP 207
Query: 482 FCKAHGGGKRCTWGTGCEKFARGRSGLCAAHG 513
FC+AHGGGK+C+ C FARGRSGLC HG
Sbjct: 208 FCRAHGGGKKCS-HEDCTGFARGRSGLCLMHG 238
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.134 0.430
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 15,368,712
Number of extensions: 733005
Number of successful extensions: 1708
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 1485
Number of HSP's successfully gapped: 6
Length of query: 631
Length of database: 11,106,569
Length adjustment: 105
Effective length of query: 526
Effective length of database: 8,227,889
Effective search space: 4327869614
Effective search space used: 4327869614
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 115 (48.9 bits)