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Os04g0640900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Lambda repressor-like, DNA-binding domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.06 (0.051) R2 : 0.78
β1 : -3.02 (0.269) R2dD : 0.171 R2D : 0.34
β2 : 1.4 (0.106) R2dC : 0.0843 R2C : 0.105
β3 : -2.73 (0.18) R2dE : 0.153 R2E : 0.232
β4 : 3.21 (0.403) R2dD*C : 0.031 R2D*C : -0.000365
β5 : 8.52 (1.06) R2dD*E : 0.088 R2D*E : 0.227
γ1 : -0.878 (0.116) R2dN8 : 0.0549 R2N8 : 0.0645
σ : 0.842
deviance : 321.01
__
_____
C
peak time of C : 11.9
E
wheather : temperature
threshold : 21.72
memory length : 496
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
321.01 0.842 8.06 -3.02 1.4 -2.73 3.21 8.52 -0.878 11.9 21.72 496 -- --
363.63 0.888 8.26 -4.68 1.46 -2.21 3.3 -- -1.35 12.2 20.77 456 -- --
357.61 0.881 8.06 -2.94 1.68 -2.62 -- 8.86 -0.886 11.7 21.55 336 -- --
383.55 0.912 8.23 -4.44 1.67 -1.78 -- -- -1.29 9.86 20.48 1892 -- --
451.91 0.99 8.05 -2.57 -- -3.32 -- 9.14 -0.825 -- 23.37 764 -- --
450.09 0.995 8.31 -5.16 1.82 -- 2.43 -- -1.71 10.1 -- -- -- --
470.75 1.02 8.31 -5.08 1.84 -- -- -- -1.71 9.68 -- -- -- --
474.88 1.01 8.25 -4.37 -- -2.68 -- -- -1.23 -- 21.3 796 -- --
458.62 0.997 7.9 -- 1.78 -4.23 -- -- 0.12 9.54 7.306 47520 -- --
671.38 1.21 8.36 -5.09 -- -- -- -- -1.71 -- -- -- -- --
1150.2 1.59 8.18 -- 1.85 -- -- -- -1.14 9.88 -- -- -- --
645.97 1.18 7.94 -- -- -4.28 -- -- 0.141 -- 7.326 47520 -- --
1355.71 1.72 8.23 -- -- -- -- -- -1.14 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 304.65 radiation 1 14400 < th dose dependent rect. 4 1
6 314.68 radiation 1 43200 < th dose dependent rect. 20 9
17 319.67 wind 1 43200 < th dose dependent rect. 22 4
19 320.43 wind 1 43200 < th dose dependent rect. 23 2
23 321.02 temperature 25 4320 > th dose independent rect. 10 2
25 321.86 temperature 25 4320 < th dose independent rect. 10 2
26 321.96 humidity 60 43200 > th dose independent rect. 8 4
27 322.85 radiation 1 14400 < th dose dependent rect. 6 9
28 322.86 wind 1 43200 < th dose dependent rect. 20 6
31 323.63 wind 1 43200 < th dose dependent rect. 7 1
35 324.02 radiation 30 14400 < th dose independent rect. 1 6
37 324.14 radiation 40 43200 < th dose independent rect. 13 19
42 324.34 humidity 60 43200 < th dose independent rect. 10 2
43 324.36 radiation 30 14400 < th dose independent rect. 3 4
44 324.36 radiation 20 43200 > th dose independent rect. 17 15
45 324.38 wind 1 43200 < th dose dependent rect. 18 8
46 324.43 radiation 20 43200 > th dose independent rect. 6 2
62 324.61 humidity 60 43200 > th dose independent rect. 2 10
67 324.79 radiation 20 43200 < th dose independent rect. 7 1
68 324.82 radiation 40 43200 < th dose independent rect. 13 9
70 324.83 radiation 40 43200 < th dose independent rect. 13 7
90 325.26 humidity 60 43200 > th dose independent rect. 22 14
94 325.32 radiation 10 43200 < th dose dependent rect. 19 12
103 325.54 radiation 20 43200 < th dose dependent rect. 18 14
105 325.60 humidity 60 43200 > th dose independent rect. 19 17
106 325.61 radiation 20 43200 < th dose independent rect. 17 16
107 325.68 radiation 40 43200 < th dose dependent rect. 18 14
109 325.73 radiation 1 43200 > th dose dependent rect. 18 14
120 325.90 radiation 1 43200 > th dose dependent rect. 4 3
132 325.92 radiation 20 43200 < th dose independent rect. 15 19
133 325.92 radiation 10 43200 > th dose dependent rect. 7 1
148 326.06 radiation 40 43200 < th dose independent rect. 14 1
151 326.13 radiation 40 43200 < th dose independent sin 14 NA
193 326.33 radiation 10 43200 < th dose independent rect. 19 13
306 327.08 radiation 10 43200 < th dose independent sin 10 NA
317 327.22 radiation 40 43200 > th dose dependent rect. 13 2
318 327.26 radiation 40 43200 > th dose dependent rect. 13 19
322 327.32 radiation 1 14400 < th dose independent rect. 9 4
361 327.53 radiation 10 43200 > th dose dependent rect. 15 18
363 327.60 radiation 40 43200 > th dose dependent rect. 12 21
364 327.63 radiation 40 43200 > th dose dependent sin 14 NA
372 327.77 atmosphere 1015 43200 > th dose dependent rect. 20 1
426 328.11 radiation 1 1440 < th dose dependent rect. 20 9
441 328.18 atmosphere 1015 43200 < th dose independent rect. 16 4
570 329.02 radiation 1 43200 < th dose independent rect. 18 9
571 329.03 radiation 1 43200 < th dose independent rect. 18 7
605 329.16 radiation 1 43200 < th dose independent rect. 18 1
648 329.40 temperature 20 720 > th dose dependent rect. 24 19
673 329.54 humidity 90 43200 > th dose dependent rect. 5 1
676 329.57 atmosphere 1015 43200 > th dose independent rect. 14 2
727 329.80 radiation 1 43200 > th dose dependent sin 12 NA
729 329.81 radiation 20 43200 < th dose independent rect. 15 1
733 329.82 atmosphere 1015 43200 > th dose dependent rect. 14 8
766 330.05 radiation 40 43200 < th dose independent rect. 6 15
774 330.06 radiation 40 43200 < th dose independent rect. 7 13
827 330.08 radiation 40 43200 < th dose independent no NA NA
828 330.08 radiation 40 43200 < th dose independent rect. 7 10
872 330.09 radiation 40 43200 < th dose independent rect. 21 22
876 330.09 radiation 40 43200 < th dose independent rect. 18 23
935 330.42 radiation 1 14400 > th dose independent rect. 8 5
941 330.48 temperature 15 43200 > th dose independent rect. 2 1
955 330.61 radiation 40 43200 < th dose dependent sin 12 NA
962 330.67 atmosphere 1015 43200 < th dose independent rect. 18 1