BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0474300 Os06g0474300|AK103398
(480 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0474300 Methyltransferase type 11 domain containing pr... 910 0.0
Os04g0444700 SAM (and some other nucleotide) binding motif ... 213 2e-55
Os08g0113400 Methyltransferase type 11 domain containing pr... 201 1e-51
Os10g0578600 Conserved hypothetical protein 175 6e-44
Os06g0138500 Conserved hypothetical protein 149 6e-36
>Os06g0474300 Methyltransferase type 11 domain containing protein
Length = 480
Score = 910 bits (2352), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 452/480 (94%), Positives = 452/480 (94%)
Query: 1 MEGFCFARCRFTRLVVAMQLVMGVLVICISMASLHRFYTTDALLPGGLDDPARCARFHGA 60
MEGFCFARCRFTRLVVAMQLVMGVLVICISMASLHRFYTTDALLPGGLDDPARCARFHGA
Sbjct: 1 MEGFCFARCRFTRLVVAMQLVMGVLVICISMASLHRFYTTDALLPGGLDDPARCARFHGA 60
Query: 61 VAGGYSGFDIRALADRVDEVLVQLAELQDKLEATALXXXXXXXXXXXXXXLQQQENMTMT 120
VAGGYSGFDIRALADRVDEVLVQLAELQDKLEATAL LQQQENMTMT
Sbjct: 61 VAGGYSGFDIRALADRVDEVLVQLAELQDKLEATALKIGKKTKKRKGKGKLQQQENMTMT 120
Query: 121 EFQRFLEDEVIHPLYGAHIVLRLIRIXXXXXXXXXXXXXXLVNFFAAEETRKYVTAKRNR 180
EFQRFLEDEVIHPLYGAHIVLRLIRI LVNFFAAEETRKYVTAKRNR
Sbjct: 121 EFQRFLEDEVIHPLYGAHIVLRLIRIPRPDPDGGAPAVDPLVNFFAAEETRKYVTAKRNR 180
Query: 181 EGRPGAYGANRTYGSIGHACVVMRRELDEYMSYDVGALCPDDWDLGQRLMLGGCDPLPRR 240
EGRPGAYGANRTYGSIGHACVVMRRELDEYMSYDVGALCPDDWDLGQRLMLGGCDPLPRR
Sbjct: 181 EGRPGAYGANRTYGSIGHACVVMRRELDEYMSYDVGALCPDDWDLGQRLMLGGCDPLPRR 240
Query: 241 RCLARASKLFRRPLPINESLWALPDDGNVRWSRYHCRGYRCLSARNPRRGYDRCVGCFDM 300
RCLARASKLFRRPLPINESLWALPDDGNVRWSRYHCRGYRCLSARNPRRGYDRCVGCFDM
Sbjct: 241 RCLARASKLFRRPLPINESLWALPDDGNVRWSRYHCRGYRCLSARNPRRGYDRCVGCFDM 300
Query: 301 DREKQRWMQGSNGTTLADFRMEEVLAVKPGEIRVGLDVTVGTGSFAARMRERGVTVVTTA 360
DREKQRWMQGSNGTTLADFRMEEVLAVKPGEIRVGLDVTVGTGSFAARMRERGVTVVTTA
Sbjct: 301 DREKQRWMQGSNGTTLADFRMEEVLAVKPGEIRVGLDVTVGTGSFAARMRERGVTVVTTA 360
Query: 361 VNLGAPFAETVALRGLVALYAGLGQRLPLFDNSMDMVHTGGVLDGWVDLQMLDFVLFDWD 420
VNLGAPFAETVALRGLVALYAGLGQRLPLFDNSMDMVHTGGVLDGWVDLQMLDFVLFDWD
Sbjct: 361 VNLGAPFAETVALRGLVALYAGLGQRLPLFDNSMDMVHTGGVLDGWVDLQMLDFVLFDWD 420
Query: 421 RVLRPGGLLWVDKFACARKDLDDYMYMFLQFRYKKHRWVVSFKSRDEVYLSALLEKPLRS 480
RVLRPGGLLWVDKFACARKDLDDYMYMFLQFRYKKHRWVVSFKSRDEVYLSALLEKPLRS
Sbjct: 421 RVLRPGGLLWVDKFACARKDLDDYMYMFLQFRYKKHRWVVSFKSRDEVYLSALLEKPLRS 480
>Os04g0444700 SAM (and some other nucleotide) binding motif domain containing
protein
Length = 448
Score = 213 bits (543), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 147/326 (45%), Positives = 190/326 (58%), Gaps = 21/326 (6%)
Query: 169 ETRKYVTAKRNREGRPGAYGANRTYGSIGHACVVMRRELDEYMSYDVGALCPDDWD-LGQ 227
E R R G G + + +G AC + EL YM+YD G CPDD D L
Sbjct: 127 ELRLATEPHRLPLGFSAKLGTDELHPGVGFACRNFQDELARYMAYDAGGECPDDADALEL 186
Query: 228 RLMLGGCDPLPRRRCLARASKLFRRPLPINESLWALPDDGNVRWSRYHCRGYRCL----- 282
+L+L GC+PLPRRRC R+ + P P+ SLW++P D V WS Y C+ Y CL
Sbjct: 187 QLILKGCEPLPRRRCRPRSPARYVEPAPLPGSLWSIPPDTTVNWSPYACKNYTCLVGRAR 246
Query: 283 SARNPRRGYDRCVGCFDM---DREKQRWMQGSNGTTLADFRMEEVLAVK-PGEIRVGLDV 338
+ Y+ C CFD+ +E++RWM + G F ++ VLA + PG +RVGLD+
Sbjct: 247 ARGGGGGSYE-CKDCFDLAAGGKERRRWMSDNGGPG---FSIDGVLASRAPGTVRVGLDI 302
Query: 339 TVGTGSFAARMRERGVTVVTTAVNLGAPFAETVALRGLVALYAGLGQRLPLFDNSMDMVH 398
G G+FAARMRERGVTVVTT +++GAPF+ VA RGLV L L QRLPL D MD+VH
Sbjct: 303 GGGAGTFAARMRERGVTVVTTTLDVGAPFSAFVASRGLVPLQLSLAQRLPLADGVMDIVH 362
Query: 399 TGGVLDGWVDLQMLDFVLFDWDRVLRPGGLLWVDKFACARKDLDD-YMYMFLQFRYKKHR 457
L GWV +L+ LFD RVLRPGG+ W+D FAC L+D Y + + +++ R
Sbjct: 363 A-MQLGGWVPGAVLELALFDVYRVLRPGGVFWLDHFACVGPRLNDTYAPILDRVGFRRLR 421
Query: 458 WVVSFK-----SRDEVYLSALLEKPL 478
W S K R+E YLSALLEKPL
Sbjct: 422 WKASRKLDLGAERNEWYLSALLEKPL 447
>Os08g0113400 Methyltransferase type 11 domain containing protein
Length = 419
Score = 201 bits (510), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 127/299 (42%), Positives = 172/299 (57%), Gaps = 30/299 (10%)
Query: 188 GANRTYGSIGHACVVMRRELDEYMSYDVGALCPDDWDLGQRLMLGGCDPLPRRRCLARAS 247
G + ++GHAC + +L+ YM Y G CP D L +RLML GCDPLPRRRC R+
Sbjct: 142 GKATVFPALGHACARFQDDLEAYMRYTPGGECPSDEQLARRLMLNGCDPLPRRRCRPRSP 201
Query: 248 KLFRRPLPINESLWALPDDGNVRWSRYHCRGYRCLSARNPRRGYDRCVGCFD-MDREKQR 306
+ +P P+ +SLWA+P D V W Y C+ Y CL R G G FD + REK+R
Sbjct: 202 AGYVQPSPLTKSLWAIPPDTTVVWDAYRCKNYSCLV----RGGGG---GEFDLLGREKRR 254
Query: 307 WMQGSNGTTLADFRMEEVLAVKP-GEIRVGLDVTVGTGSFAARMRERGVTVVTTAVNLGA 365
WM+ + ++ VLA +P G +R+GLD+ +G+FAARMRERGV V TTA+N G
Sbjct: 255 WMRDDGALA---YSIDSVLAARPNGTVRIGLDIGGVSGTFAARMRERGVAVATTAMNSGG 311
Query: 366 PFAETVALRGLVALYAGLGQRLPLFDNSMDMVHTGGVLDGWVDLQ-----MLDFVLFDWD 420
P +A RGLV ++ G RLP FD ++D+VH W + ML+F LFD
Sbjct: 312 PSGSLIASRGLVPVHVGPAHRLPFFDGTLDIVH-------WTSPEHVAGVMLEFALFDIY 364
Query: 421 RVLRPGGLLWVDKFACARKDLD-DYMYMFLQFRYKKHRWVVSFKSRDEVYLSALLEKPL 478
RVLRPGGLLW+D F + L+ + M + +++ RW K +SALLEKP+
Sbjct: 365 RVLRPGGLLWLDHFVFPGEQLNATFAPMVDRVGFRRLRWNTGKK-----LVSALLEKPM 418
>Os10g0578600 Conserved hypothetical protein
Length = 395
Score = 175 bits (444), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 117/303 (38%), Positives = 159/303 (52%), Gaps = 30/303 (9%)
Query: 194 GSIGHACVVMRRELDEYMSYDVGALCPDD-WDLGQRLMLGGCDPLPRRRCLARASKLFRR 252
+ AC L +MSY + CPDD L + L+L GC PLPRRRC + +S
Sbjct: 104 APLASACSAHPDLLHRFMSYTPFSPCPDDALSLAEPLLLRGCHPLPRRRCFSSSSISSSH 163
Query: 253 PLP--INESLWALPDDGNVRWSR-YHCRGYRCLSARNPRRGYDRCVGCFDMDR-EKQRWM 308
L + LPD VRW C + CL P G FD+ R E R++
Sbjct: 164 NLNNLPTDPFSPLPDSA-VRWPPGAKCTSFSCLP---PSLG-------FDLARTEAARFL 212
Query: 309 QGSNGTTLADFRMEEVLAV-KPGEIRVGLDVTVGTGSFAARM-RERGVTVVTTAVNLGAP 366
+ L ++ + ++ + G IR+GLDV GTG+ AAR+ R TV+TT +NLGAP
Sbjct: 213 RAEGPLDLTVPQLLRLASLSRAGPIRLGLDVGGGTGTLAARLKRAANATVLTTTMNLGAP 272
Query: 367 FAETVALRGLVALYAGLGQRLPLFDNSMDMVHTGGVLDGWVDLQMLDFVLFDWDRVLRPG 426
++E A RG+V L+A L QR P+ D +MD+V G ++ W+ L+F+ +D DRVLRP
Sbjct: 273 YSEAAAARGVVPLHAPLQQRFPVGDATMDLVRAGHAVNRWIPEAALEFLWYDADRVLRPR 332
Query: 427 GLLWVDKFACARKDLDD-YMYMFLQFRYKKHRWVVSFK-----------SRDEVYLSALL 474
GLLWVD F C R DL Y M + YK +W V+ K D VYL+ALL
Sbjct: 333 GLLWVDHFWCRRPDLAAVYQPMLRRLGYKTLKWAVADKTTPTPTAPPGAKHDHVYLTALL 392
Query: 475 EKP 477
+KP
Sbjct: 393 QKP 395
>Os06g0138500 Conserved hypothetical protein
Length = 383
Score = 149 bits (375), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 114/318 (35%), Positives = 149/318 (46%), Gaps = 67/318 (21%)
Query: 182 GRPGAYGANRTYGSIGHACVVMRRELD---EYMSYDVGALCPDDWDLGQ-RLMLGGCDPL 237
GR G S+ H+C L +MSYD A CP + L Q RL+ C+PL
Sbjct: 112 GRDARTGLTHMPASVAHSCFRSPATLSLLAAFMSYDPHAACPRNATLQQHRLLSKACEPL 171
Query: 238 PRRRCLARASKLFRRPLPINESLWALPDDGNVRWSRYHCRGYRCLSARNPRRGYDRCVGC 297
PRRRCL+ R LP + + DG RW R PR Y+
Sbjct: 172 PRRRCLSGGP---RAALPASN----MGVDGR-RWVR-------------PRHDYE----- 205
Query: 298 FDMDREKQRWMQGSNGTTLADFRMEEVLAVKPGEIRVGLDVTVGTGSFAARMRERGVTVV 357
F +++VL + IR+GLDV G +FAARMR+RGVTVV
Sbjct: 206 ---------------------FLLDDVLRLGATRIRIGLDVAGGAANFAARMRDRGVTVV 244
Query: 358 TTAV-NLGAPFAETVALRGLVALYAGLGQRLPLFDNSMDMVHTG-GVLDGWVDLQM---- 411
TT + N G P E VA RGL L R P +D D+VH G LD M
Sbjct: 245 TTVLDNAGKPMNEFVAARGLFPLLLSPAHRFPFYDGVFDLVHVGTNALDEGGAPSMGNSG 304
Query: 412 ----LDFVLFDWDRVLRPGGLLWVDKFACARKDLDDYMYMFLQ-FRYKKHRWVVSFK--- 463
L+F +FD DRVLR GGLLW+D + C ++ + ++ F YKK +W+V K
Sbjct: 305 TEEALEFFMFDVDRVLRVGGLLWIDSYLCQSEERRQLVVNLIKRFGYKKLKWMVGEKAGT 364
Query: 464 --SRDEVYLSALLEKPLR 479
++ +YLSALL+KP R
Sbjct: 365 GSAKTALYLSALLQKPAR 382
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.327 0.142 0.449
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 16,056,961
Number of extensions: 678497
Number of successful extensions: 1703
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 1690
Number of HSP's successfully gapped: 5
Length of query: 480
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 375
Effective length of database: 11,553,331
Effective search space: 4332499125
Effective search space used: 4332499125
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 158 (65.5 bits)