BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0360300 Os06g0360300|AK105919
(291 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0360300 NAD-dependent epimerase/dehydratase family pro... 510 e-145
Os10g0100300 NAD-dependent epimerase/dehydratase family pro... 109 2e-24
Os03g0822200 NAD-dependent epimerase/dehydratase family pro... 90 2e-18
Os05g0110300 NAD-dependent epimerase/dehydratase family pro... 73 2e-13
Os03g0355900 NmrA-like family protein 66 4e-11
>Os06g0360300 NAD-dependent epimerase/dehydratase family protein
Length = 291
Score = 510 bits (1314), Expect = e-145, Method: Compositional matrix adjust.
Identities = 256/291 (87%), Positives = 256/291 (87%)
Query: 1 MATAFHTIXXXXXXXXXXXXXXXXXGPRPATRKLSLTSTAVXXXXXXXXXXXXXXXXXXV 60
MATAFHTI GPRPATRKLSLTSTAV V
Sbjct: 1 MATAFHTIAAARPRLPLAAFACLCPGPRPATRKLSLTSTAVSTIDSAPASSSDAKKTTTV 60
Query: 61 FVAGSTGRTGKRVVEKLLERGFGVVAGTTDVGRARRSLPQDPNLQLVRADVMEGTDKLVD 120
FVAGSTGRTGKRVVEKLLERGFGVVAGTTDVGRARRSLPQDPNLQLVRADVMEGTDKLVD
Sbjct: 61 FVAGSTGRTGKRVVEKLLERGFGVVAGTTDVGRARRSLPQDPNLQLVRADVMEGTDKLVD 120
Query: 121 AIRGADAVVCATGFRRSFDPFAPWKVDNFGTVNLVEACRKAGVTRFILVSSILVNGAAMG 180
AIRGADAVVCATGFRRSFDPFAPWKVDNFGTVNLVEACRKAGVTRFILVSSILVNGAAMG
Sbjct: 121 AIRGADAVVCATGFRRSFDPFAPWKVDNFGTVNLVEACRKAGVTRFILVSSILVNGAAMG 180
Query: 181 QLLNPAYTVLNLFGLVLVAKLQAEKHIRSSGINYTIIRPGGLTEQPPTGNIVMEPEDTLY 240
QLLNPAYTVLNLFGLVLVAKLQAEKHIRSSGINYTIIRPGGLTEQPPTGNIVMEPEDTLY
Sbjct: 181 QLLNPAYTVLNLFGLVLVAKLQAEKHIRSSGINYTIIRPGGLTEQPPTGNIVMEPEDTLY 240
Query: 241 EGSISRQQVAEVAVEALLCREESSYKVVEIVTRAEAHNRPLKDLFASIKQS 291
EGSISRQQVAEVAVEALLCREESSYKVVEIVTRAEAHNRPLKDLFASIKQS
Sbjct: 241 EGSISRQQVAEVAVEALLCREESSYKVVEIVTRAEAHNRPLKDLFASIKQS 291
>Os10g0100300 NAD-dependent epimerase/dehydratase family protein
Length = 497
Score = 109 bits (273), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 89/250 (35%), Positives = 125/250 (50%), Gaps = 28/250 (11%)
Query: 60 VFVAGSTGRTGKRVVEKLLERGFGVVAGTTDVGRAR------RSLPQDPN-------LQL 106
VF+AG+TG+ G R V + ++ GF V AG RA L D + L++
Sbjct: 75 VFIAGATGKVGSRAVREFIKLGFRVRAGVRSAQRASSLVQSVEQLKVDDDATSPAERLEI 134
Query: 107 VRADV-MEGTDKLVDAIRGADAVVCATGFRRS--FDPFAPWKVDNFGTVNLVEACRKAGV 163
V D+ + +V AI A VVC+ G D P+++D T NLV+A A V
Sbjct: 135 VECDLEKQAQSDIVSAIGNAAIVVCSIGASEKDILDVTGPYRIDYMATNNLVQAATAAKV 194
Query: 164 TRFILVSSILVNGAAMGQLLNPAYTVLNLFGLVLVAKLQAEKHIRSSGINYTIIRPGGLT 223
FILV+S+ N PA+ +LNLF VL K +AE+ + SG+ YTI+RPGG+
Sbjct: 195 EHFILVTSLGTNRIGF-----PAF-LLNLFWGVLCWKRRAEEALIGSGLPYTIVRPGGM- 247
Query: 224 EQP-----PTGNIVMEPEDTLYEGSISRQQVAEVAVEALLCREESSYKVVEIVTRAEAHN 278
E+P T N+V+ EDT G +S QVAE+ R + KVVE + A
Sbjct: 248 ERPTDAFKETHNLVVAVEDTYVGGLVSNLQVAELIACIASNRRTAYCKVVEAIAETTAPL 307
Query: 279 RPLKDLFASI 288
P +D A+I
Sbjct: 308 LPTEDQLANI 317
>Os03g0822200 NAD-dependent epimerase/dehydratase family protein
Length = 257
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 80/254 (31%), Positives = 125/254 (49%), Gaps = 35/254 (13%)
Query: 60 VFVAGSTGRTGKRVVEKLLERGFG-VVAGTTDVGRARRSLPQDPNLQLVRADVMEGTDKL 118
V V G+ GRTG V KL ER VV G +++ + ++ + AD+ + D L
Sbjct: 11 VLVTGAGGRTGNIVYNKLKERSDQFVVRGLVRTEESKQKIGGGNDVYI--ADIRD-RDHL 67
Query: 119 VDAIRGADAVVCATG----FRRSFDP-------------FAPWKVDNFGTVNLVEACRKA 161
V A++G DA++ T + FDP P +VD G N ++ + A
Sbjct: 68 VPAVQGVDALIILTSAVPKMKPGFDPSKGGRPEFYYEDGMYPEQVDWIGQKNQIDTAKAA 127
Query: 162 GVTRFILVSSILVNGAAMGQLLNPAYTVLNL-FGLVLVAKLQAEKHIRSSGINYTIIRPG 220
GV +LV S MG NP + + +L G +LV K ++E+++ SG+ YTIIRPG
Sbjct: 128 GVKHIVLVGS-------MGGT-NPNHPLNSLGNGNILVWKRKSEQYLADSGVPYTIIRPG 179
Query: 221 GLTEQP-PTGNIVMEPEDTLYE---GSISRQQVAEVAVEALLCREESSYKVVEIVTRAEA 276
GL ++ +++ +D L + SI R VAEV V+AL EE+ +K ++ ++ E
Sbjct: 180 GLQDKDGGVRELIVGNDDELLQTDTKSIPRADVAEVCVQALQY-EETKFKAFDLASKPEG 238
Query: 277 HNRPLKDLFASIKQ 290
P KD + Q
Sbjct: 239 TGTPTKDFKSLFSQ 252
>Os05g0110300 NAD-dependent epimerase/dehydratase family protein
Length = 293
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 75/257 (29%), Positives = 120/257 (46%), Gaps = 41/257 (15%)
Query: 60 VFVAGSTGRTGKRVVEKLLER-----GFGVVAGTTDVGRARRSLPQDPNLQLVRADVMEG 114
V V G+ GRTG+ V +KL ER G G+V T+ +A+ D + +R
Sbjct: 47 VLVTGAGGRTGQIVYKKLKERADQFVGRGLV--RTEESKAKIGGAADVFVGDIRDPA--- 101
Query: 115 TDKLVDAIRGADAVVCATG----FRRSFDPFA-------------PWKVDNFGTVNLVEA 157
+ AI G DA++ T + FDP P +VD G N ++A
Sbjct: 102 --SIAPAIDGIDALIILTSAVPKMKPGFDPSKGGRPEFYFEDGSYPEQVDWIGQRNQIDA 159
Query: 158 CRKAGVTRFILVSSILVNGAAMGQLLNPAYTVLNLFGLVLVAKLQAEKHIRSSGINYTII 217
+ GV + +LV S+ G + LN +LV K +AE+++ SG+ YTII
Sbjct: 160 AKSIGVKQVVLVGSM--GGTDVNHPLNKLGNAN-----ILVWKRKAEQYLADSGLPYTII 212
Query: 218 RPGGLTEQP-PTGNIVMEPEDTLYE---GSISRQQVAEVAVEALLCREESSYKVVEIVTR 273
R GGL ++ +++ +D + + +I+R VAEV ++ALL EE+ +K ++ ++
Sbjct: 213 RAGGLQDKDGGVRELLVGKDDEILKTETKTITRADVAEVCLQALLF-EEARFKAFDLASK 271
Query: 274 AEAHNRPLKDLFASIKQ 290
E P D A Q
Sbjct: 272 PEGEGVPTTDFRALFSQ 288
>Os03g0355900 NmrA-like family protein
Length = 333
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 59/174 (33%), Positives = 81/174 (46%), Gaps = 28/174 (16%)
Query: 104 LQLVRADVMEGTDKLVDAIRGADAVVCATGF-----RRSFDPFAPWKVDNFGTVNLVEAC 158
Q +AD + + G V+C TG +R P +VD GT NLV A
Sbjct: 133 FQAYKADTRNAAELDPEIFEGVTHVICTTGTTAFPSKRWDGDNTPERVDWDGTRNLVSAM 192
Query: 159 RKAGVTRFILVSSILVNGAAMGQLLNPAYTVLNLFGLVLVAKLQAEKHIRSSGINYTIIR 218
+ + R +LVSSI V + ++++NLFG VL K AE +++SGI +TIIR
Sbjct: 193 PRT-IKRLVLVSSIGVT-----KYNELPWSIMNLFG-VLKYKKMAEDFVQNSGIPFTIIR 245
Query: 219 PGGLTEQPPTGN---------------IVMEPEDTLYEGSISRQQVAEVAVEAL 257
PG LT+ P T +VM D L G SR VAE ++AL
Sbjct: 246 PGRLTDGPYTSYDLNTLLQATAGERRAVVMGEGDKLV-GEASRLVVAEACIQAL 298
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.135 0.382
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,876,310
Number of extensions: 293395
Number of successful extensions: 651
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 647
Number of HSP's successfully gapped: 5
Length of query: 291
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 191
Effective length of database: 11,814,401
Effective search space: 2256550591
Effective search space used: 2256550591
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 155 (64.3 bits)