Os05g0110300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : NAD-dependent epimerase/dehydratase family protein.
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Os05g0110300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : NAD-dependent epimerase/dehydratase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 117.02 | 0.508 | 10.3 | -0.425 | 1.37 | 1.12 | 0.0362 | 1.21 | -1.07 | 22.7 | 35.78 | 459 | -- | -- |
| 118.75 | 0.508 | 10.3 | -0.444 | 1.38 | 1.15 | 0.0449 | -- | -1.07 | 22.7 | 34.72 | 458 | -- | -- |
| 116.4 | 0.502 | 10.3 | -0.42 | 1.36 | 1.07 | -- | 1.44 | -1.08 | 22.6 | 41.18 | 439 | -- | -- |
| 117.43 | 0.505 | 10.3 | -0.487 | 1.38 | 1.15 | -- | -- | -1.1 | 22.7 | 41.17 | 455 | -- | -- |
| 180.94 | 0.626 | 10.2 | -0.399 | -- | 1.51 | -- | 1.61 | -1.16 | -- | 36.31 | 924 | -- | -- |
| 138.98 | 0.553 | 10.2 | -0.395 | 1.45 | -- | 0.0452 | -- | -0.965 | 21.2 | -- | -- | -- | -- |
| 138.98 | 0.552 | 10.2 | -0.397 | 1.45 | -- | -- | -- | -0.965 | 21.2 | -- | -- | -- | -- |
| 180.53 | 0.626 | 10.2 | -0.406 | -- | 1.65 | -- | -- | -1.07 | -- | 29.95 | 972 | -- | -- |
| 123.9 | 0.518 | 10.3 | -- | 1.38 | 1.09 | -- | -- | -1.07 | 22.6 | 41.19 | 447 | -- | -- |
| 261.82 | 0.756 | 10.2 | -0.391 | -- | -- | -- | -- | -0.972 | -- | -- | -- | -- | -- |
| 143.14 | 0.56 | 10.2 | -- | 1.45 | -- | -- | -- | -0.921 | 21.2 | -- | -- | -- | -- |
| 185.88 | 0.635 | 10.2 | -- | -- | 1.52 | -- | -- | -1.1 | -- | 29.92 | 971 | -- | -- |
| 265.86 | 0.761 | 10.2 | -- | -- | -- | -- | -- | -0.928 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 112.96 | temperature | 20.0 | 270 | > th | dose independent | rect. | 3 | 9 |
| 3 | 114.34 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 1 | 11 |
| 10 | 115.67 | temperature | 20.0 | 270 | < th | dose independent | rect. | 24 | 11 |
| 11 | 115.73 | temperature | 25.0 | 90 | < th | dose dependent | sin | 5 | NA |
| 24 | 116.26 | temperature | 20.0 | 270 | < th | dose independent | sin | 6 | NA |
| 26 | 116.32 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 7 | 3 |
| 27 | 116.32 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 7 | 3 |
| 31 | 116.42 | temperature | 20.0 | 270 | > th | dose independent | sin | 6 | NA |
| 37 | 116.59 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 9 | 2 |
| 44 | 116.69 | temperature | 10.0 | 14400 | > th | dose dependent | rect. | 9 | 2 |
| 48 | 116.71 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 7 | 6 |
| 53 | 116.73 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 7 | 4 |
| 57 | 116.79 | temperature | 20.0 | 270 | > th | dose independent | rect. | 19 | 17 |
| 58 | 116.80 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 7 | 3 |
| 59 | 116.80 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 7 | 3 |
| 64 | 116.83 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 3 | 8 |
| 70 | 116.93 | temperature | 20.0 | 270 | > th | dose independent | rect. | 21 | 15 |
| 72 | 116.99 | wind | 3.0 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 110 | 117.30 | wind | 3.0 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 126 | 117.44 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 9 | 1 |
| 128 | 117.44 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 9 | 1 |
| 141 | 117.49 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 4 | 4 |
| 151 | 117.57 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 4 | 4 |
| 156 | 117.58 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 172 | 117.65 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 6 | 8 |
| 205 | 117.78 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 9 | 1 |
| 206 | 117.78 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 9 | 1 |
| 248 | 117.94 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 262 | 117.97 | wind | 3.0 | 43200 | < th | dose independent | rect. | 4 | 4 |
| 263 | 117.97 | temperature | 10.0 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 273 | 118.00 | wind | 3.0 | 43200 | > th | dose independent | rect. | 4 | 4 |
| 285 | 118.03 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 6 | 8 |
| 288 | 118.03 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 6 | 8 |
| 303 | 118.08 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 13 | 1 |
| 340 | 118.22 | radiation | 30.0 | 1440 | > th | dose independent | rect. | 9 | 3 |
| 382 | 118.33 | radiation | 30.0 | 1440 | < th | dose independent | rect. | 9 | 3 |
| 388 | 118.35 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 5 | 8 |
| 447 | 118.48 | wind | 5.0 | 14400 | < th | dose dependent | rect. | 14 | 1 |
| 499 | 118.58 | temperature | 30.0 | 14400 | < th | dose dependent | sin | 23 | NA |
| 508 | 118.60 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 10 | 1 |
| 520 | 118.62 | temperature | 10.0 | 14400 | > th | dose dependent | sin | 23 | NA |
| 562 | 118.71 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 2 | 20 |
| 585 | 118.75 | temperature | 15.0 | 1440 | > th | dose dependent | rect. | 9 | 2 |
| 627 | 118.82 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 7 | 20 |
| 641 | 118.85 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 9 | 1 |
| 652 | 118.86 | wind | 1.0 | 43200 | > th | dose independent | rect. | 13 | 13 |
| 675 | 118.88 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 6 | 16 |
| 689 | 118.91 | radiation | 30.0 | 1440 | < th | dose independent | rect. | 9 | 1 |
| 721 | 118.95 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 7 | 3 |
| 796 | 119.05 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 20 | 3 |
| 865 | 119.14 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 7 | 6 |
| 903 | 119.18 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 19 | 2 |
| 920 | 119.20 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 966 | 119.25 | radiation | 20.0 | 1440 | > th | dose dependent | rect. | 10 | 1 |
| 977 | 119.26 | humidity | 90.0 | 14400 | > th | dose dependent | sin | 0 | NA |
| 994 | 119.28 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 7 | 1 |
| 995 | 119.28 | radiation | 20.0 | 1440 | > th | dose dependent | rect. | 9 | 3 |