BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0110300 Os05g0110300|AK071038
(293 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0110300 NAD-dependent epimerase/dehydratase family pro... 556 e-159
Os03g0822200 NAD-dependent epimerase/dehydratase family pro... 415 e-116
Os03g0355900 NmrA-like family protein 77 2e-14
Os06g0360300 NAD-dependent epimerase/dehydratase family pro... 76 4e-14
>Os05g0110300 NAD-dependent epimerase/dehydratase family protein
Length = 293
Score = 556 bits (1434), Expect = e-159, Method: Compositional matrix adjust.
Identities = 278/293 (94%), Positives = 278/293 (94%)
Query: 1 MTTIAARMPFAGPRLRPPCNLTASRPGPRRXXXXXXXXXXXXXXXTVLVTGAGGRTGQIV 60
MTTIAARMPFAGPRLRPPCNLTASRPGPRR TVLVTGAGGRTGQIV
Sbjct: 1 MTTIAARMPFAGPRLRPPCNLTASRPGPRRAGLAVVSAAAGGPLPTVLVTGAGGRTGQIV 60
Query: 61 YKKLKERADQFVGRGLVRTEESKAKIGGAADVFVGDIRDPASIAPAIDGIDALIILTSAV 120
YKKLKERADQFVGRGLVRTEESKAKIGGAADVFVGDIRDPASIAPAIDGIDALIILTSAV
Sbjct: 61 YKKLKERADQFVGRGLVRTEESKAKIGGAADVFVGDIRDPASIAPAIDGIDALIILTSAV 120
Query: 121 PKMKPGFDPSKGGRPEFYFEDGSYPEQVDWIGQRNQIDAAKSIGVKQVVLVGSMGGTDVN 180
PKMKPGFDPSKGGRPEFYFEDGSYPEQVDWIGQRNQIDAAKSIGVKQVVLVGSMGGTDVN
Sbjct: 121 PKMKPGFDPSKGGRPEFYFEDGSYPEQVDWIGQRNQIDAAKSIGVKQVVLVGSMGGTDVN 180
Query: 181 HPLNKLGNANILVWKRKAEQYLADSGLPYTIIRAGGLQDKDGGVRELLVGKDDEILKTET 240
HPLNKLGNANILVWKRKAEQYLADSGLPYTIIRAGGLQDKDGGVRELLVGKDDEILKTET
Sbjct: 181 HPLNKLGNANILVWKRKAEQYLADSGLPYTIIRAGGLQDKDGGVRELLVGKDDEILKTET 240
Query: 241 KTITRADVAEVCLQALLFEEARFKAFDLASKPEGEGVPTTDFRALFSQVNSRF 293
KTITRADVAEVCLQALLFEEARFKAFDLASKPEGEGVPTTDFRALFSQVNSRF
Sbjct: 241 KTITRADVAEVCLQALLFEEARFKAFDLASKPEGEGVPTTDFRALFSQVNSRF 293
>Os03g0822200 NAD-dependent epimerase/dehydratase family protein
Length = 257
Score = 415 bits (1066), Expect = e-116, Method: Compositional matrix adjust.
Identities = 196/248 (79%), Positives = 220/248 (88%)
Query: 46 TVLVTGAGGRTGQIVYKKLKERADQFVGRGLVRTEESKAKIGGAADVFVGDIRDPASIAP 105
TVLVTGAGGRTG IVY KLKER+DQFV RGLVRTEESK KIGG DV++ DIRD + P
Sbjct: 10 TVLVTGAGGRTGNIVYNKLKERSDQFVVRGLVRTEESKQKIGGGNDVYIADIRDRDHLVP 69
Query: 106 AIDGIDALIILTSAVPKMKPGFDPSKGGRPEFYFEDGSYPEQVDWIGQRNQIDAAKSIGV 165
A+ G+DALIILTSAVPKMKPGFDPSKGGRPEFY+EDG YPEQVDWIGQ+NQID AK+ GV
Sbjct: 70 AVQGVDALIILTSAVPKMKPGFDPSKGGRPEFYYEDGMYPEQVDWIGQKNQIDTAKAAGV 129
Query: 166 KQVVLVGSMGGTDVNHPLNKLGNANILVWKRKAEQYLADSGLPYTIIRAGGLQDKDGGVR 225
K +VLVGSMGGT+ NHPLN LGN NILVWKRK+EQYLADSG+PYTIIR GGLQDKDGGVR
Sbjct: 130 KHIVLVGSMGGTNPNHPLNSLGNGNILVWKRKSEQYLADSGVPYTIIRPGGLQDKDGGVR 189
Query: 226 ELLVGKDDEILKTETKTITRADVAEVCLQALLFEEARFKAFDLASKPEGEGVPTTDFRAL 285
EL+VG DDE+L+T+TK+I RADVAEVC+QAL +EE +FKAFDLASKPEG G PT DF++L
Sbjct: 190 ELIVGNDDELLQTDTKSIPRADVAEVCVQALQYEETKFKAFDLASKPEGTGTPTKDFKSL 249
Query: 286 FSQVNSRF 293
FSQV +RF
Sbjct: 250 FSQVTARF 257
>Os03g0355900 NmrA-like family protein
Length = 333
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/215 (29%), Positives = 106/215 (49%), Gaps = 34/215 (15%)
Query: 93 FVGDIRDPASIAPAI-DGIDALIILTSAVPKMKPGFDPSKGGRPEFYFEDGSYPEQVDWI 151
+ D R+ A + P I +G+ +I T F PSK ++ + PE+VDW
Sbjct: 136 YKADTRNAAELDPEIFEGVTHVICTTGTT-----AF-PSK------RWDGDNTPERVDWD 183
Query: 152 GQRNQIDAAKSIGVKQVVLVGSMGGTDVNH-PLNKLGNANILVWKRKAEQYLADSGLPYT 210
G RN + A +K++VLV S+G T N P + + +L +K+ AE ++ +SG+P+T
Sbjct: 184 GTRNLVSAMPRT-IKRLVLVSSIGVTKYNELPWSIMNLFGVLKYKKMAEDFVQNSGIPFT 242
Query: 211 IIRAGGLQD--------------KDGGVRELLVGKDDEILKTETKTITRADVAEVCLQAL 256
IIR G L D G R +++G+ D+++ ++ + VAE C+QAL
Sbjct: 243 IIRPGRLTDGPYTSYDLNTLLQATAGERRAVVMGEGDKLVGEASRLV----VAEACIQAL 298
Query: 257 LFEEARFKAFDLAS-KPEGEGVPTTDFRALFSQVN 290
E + +++ S K EG G ++ LF V
Sbjct: 299 DIEFTEGQIYEINSVKGEGPGSDPEKWKELFRAVQ 333
>Os06g0360300 NAD-dependent epimerase/dehydratase family protein
Length = 291
Score = 75.9 bits (185), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 76/258 (29%), Positives = 121/258 (46%), Gaps = 41/258 (15%)
Query: 46 TVLVTGAGGRTGQIVYKKLKERADQFVGRGLV--RTEESKAKIGGAADVFVGDIRDPA-- 101
TV V G+ GRTG+ V +KL ER G G+V T+ +A+ D + +R
Sbjct: 59 TVFVAGSTGRTGKRVVEKLLER-----GFGVVAGTTDVGRARRSLPQDPNLQLVRADVME 113
Query: 102 ---SIAPAIDGIDALIILTSAVPKMKPGFDPSKGGRPEFYFEDGSYPEQVDWIGQRNQID 158
+ AI G DA++ T + FDP P +VD G N ++
Sbjct: 114 GTDKLVDAIRGADAVVCATG----FRRSFDPFA-------------PWKVDNFGTVNLVE 156
Query: 159 AAKSIGVKQVVLVGSM--GGTDVNHPLNKLGNAN-----ILVWKRKAEQYLADSGLPYTI 211
A + GV + +LV S+ G + LN +LV K +AE+++ SG+ YTI
Sbjct: 157 ACRKAGVTRFILVSSILVNGAAMGQLLNPAYTVLNLFGLVLVAKLQAEKHIRSSGINYTI 216
Query: 212 IRAGGLQDKDGGVRELLVGKDDEILKTETKTITRADVAEVCLQALLF-EEARFKAFDLAS 270
IR GGL ++ +++ +D + + +I+R VAEV ++ALL EE+ +K ++ +
Sbjct: 217 IRPGGLTEQP-PTGNIVMEPEDTLYE---GSISRQQVAEVAVEALLCREESSYKVVEIVT 272
Query: 271 KPEGEGVPTTDFRALFSQ 288
+ E P D A Q
Sbjct: 273 RAEAHNRPLKDLFASIKQ 290
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.138 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,307,140
Number of extensions: 446099
Number of successful extensions: 943
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 944
Number of HSP's successfully gapped: 4
Length of query: 293
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 193
Effective length of database: 11,814,401
Effective search space: 2280179393
Effective search space used: 2280179393
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 155 (64.3 bits)