Os03g0355900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : NmrA-like family protein.
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Os03g0355900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : NmrA-like family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 128.03 | 0.532 | 12.3 | -2.85 | 3.83 | -0.567 | 1.64 | -2.15 | -0.42 | 8.56 | 41.83 | 714 | -- | -- |
| 132.64 | 0.536 | 12.3 | -2.73 | 3.88 | -0.658 | 1.91 | -- | -0.404 | 8.6 | 40 | 625 | -- | -- |
| 134.42 | 0.54 | 12.3 | -2.83 | 3.83 | -0.546 | -- | -3.11 | -0.396 | 8.51 | 41.51 | 787 | -- | -- |
| 144.96 | 0.561 | 12.3 | -2.67 | 3.86 | -0.735 | -- | -- | -0.407 | 8.6 | 40 | 624 | -- | -- |
| 615.63 | 1.16 | 12.5 | -2.33 | -- | -3.19 | -- | 2.01 | -0.182 | -- | -52.42 | 860 | -- | -- |
| 142.43 | 0.559 | 12.3 | -2.75 | 4.13 | -- | 2.19 | -- | -0.451 | 8.36 | -- | -- | -- | -- |
| 157.51 | 0.588 | 12.3 | -2.69 | 4.12 | -- | -- | -- | -0.453 | 8.34 | -- | -- | -- | -- |
| 563.72 | 1.11 | 12.3 | -2.4 | -- | -3.85 | -- | -- | 0.0171 | -- | -2.825 | 858 | -- | -- |
| 328.48 | 0.844 | 12.2 | -- | 3.75 | -1.02 | -- | -- | 0.0241 | 8.82 | 30 | 614 | -- | -- |
| 1101.5 | 1.55 | 12.4 | -2.66 | -- | -- | -- | -- | -0.409 | -- | -- | -- | -- | -- |
| 348.1 | 0.873 | 12.2 | -- | 4.11 | -- | -- | -- | -0.153 | 8.39 | -- | -- | -- | -- |
| 714.36 | 1.24 | 12.2 | -- | -- | -3.98 | -- | -- | 0.301 | -- | -0.8461 | 867 | -- | -- |
| 1288.7 | 1.68 | 12.3 | -- | -- | -- | -- | -- | -0.113 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 114.31 | temperature | 30.0 | 270 | < th | dose independent | rect. | 21 | 18 |
| 2 | 115.50 | temperature | 30.0 | 270 | < th | dose independent | rect. | 9 | 6 |
| 10 | 117.80 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 15 | 6 |
| 17 | 118.58 | temperature | 30.0 | 30 | < th | dose independent | rect. | 10 | 8 |
| 22 | 118.89 | temperature | 25.0 | 270 | > th | dose independent | rect. | 15 | 5 |
| 26 | 119.02 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 8 | 7 |
| 28 | 119.25 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 9 | 5 |
| 46 | 120.10 | temperature | 25.0 | 270 | > th | dose independent | rect. | 16 | 3 |
| 53 | 120.44 | temperature | 30.0 | 30 | < th | dose independent | rect. | 10 | 6 |
| 79 | 121.16 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 5 | 15 |
| 90 | 121.54 | temperature | 30.0 | 270 | < th | dose independent | rect. | 10 | 17 |
| 95 | 121.68 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 9 | 1 |
| 96 | 121.70 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 8 | 5 |
| 103 | 121.88 | temperature | 25.0 | 30 | > th | dose independent | rect. | 18 | 3 |
| 104 | 121.88 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 10 | 8 |
| 113 | 122.04 | temperature | 30.0 | 270 | < th | dose independent | rect. | 9 | 19 |
| 119 | 122.12 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 2 | 11 |
| 121 | 122.13 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 9 | 6 |
| 126 | 122.16 | temperature | 25.0 | 30 | > th | dose independent | rect. | 16 | 7 |
| 168 | 122.46 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 19 | 3 |
| 191 | 122.83 | temperature | 25.0 | 720 | < th | dose independent | rect. | 3 | 14 |
| 198 | 122.87 | temperature | 25.0 | 720 | > th | dose independent | rect. | 5 | 12 |
| 200 | 122.90 | temperature | 25.0 | 10 | > th | dose independent | rect. | 16 | 5 |
| 229 | 123.16 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 11 | 1 |
| 249 | 123.31 | temperature | 25.0 | 30 | > th | dose independent | rect. | 18 | 5 |
| 263 | 123.41 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 10 | 8 |
| 284 | 123.56 | temperature | 25.0 | 720 | < th | dose independent | sin | 2 | NA |
| 287 | 123.57 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 16 | 7 |
| 291 | 123.61 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 7 | 9 |
| 309 | 123.75 | temperature | 25.0 | 720 | > th | dose dependent | sin | 5 | NA |
| 335 | 123.90 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 9 | 6 |
| 372 | 124.12 | temperature | 25.0 | 720 | > th | dose independent | sin | 2 | NA |
| 446 | 124.50 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 22 | 8 |
| 449 | 124.50 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 22 | 8 |
| 453 | 124.50 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 22 | 8 |
| 460 | 124.50 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 22 | 8 |
| 461 | 124.50 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 22 | 8 |
| 470 | 124.50 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 6 | 16 |
| 490 | 124.61 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 15 | 17 |
| 544 | 124.91 | atmosphere | 1015.0 | 90 | < th | dose dependent | rect. | 5 | 16 |
| 557 | 125.02 | wind | 9.0 | 270 | < th | dose independent | rect. | 4 | 15 |
| 575 | 125.10 | wind | 1.0 | 30 | > th | dose independent | rect. | 5 | 16 |
| 576 | 125.10 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 18 | 13 |
| 608 | 125.23 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 10 | 17 |
| 609 | 125.24 | humidity | 70.0 | 270 | > th | dose independent | rect. | 19 | 9 |
| 619 | 125.27 | humidity | 90.0 | 270 | < th | dose independent | rect. | 16 | 3 |
| 620 | 125.27 | humidity | 60.0 | 270 | > th | dose independent | rect. | 10 | 5 |
| 630 | 125.30 | temperature | 30.0 | 720 | < th | dose dependent | sin | 1 | NA |
| 636 | 125.32 | humidity | 90.0 | 270 | < th | dose independent | rect. | 15 | 5 |
| 660 | 125.43 | humidity | 60.0 | 270 | > th | dose independent | rect. | 11 | 3 |
| 702 | 125.61 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 21 | 21 |
| 712 | 125.65 | radiation | 10.0 | 270 | > th | dose independent | rect. | 16 | 1 |
| 713 | 125.65 | wind | 5.0 | 30 | < th | dose independent | rect. | 18 | 3 |
| 770 | 125.83 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 23 | 19 |
| 774 | 125.84 | radiation | 1.0 | 270 | > th | dose independent | rect. | 8 | 7 |
| 778 | 125.85 | temperature | 15.0 | 270 | > th | dose independent | rect. | 8 | 8 |
| 781 | 125.87 | wind | 9.0 | 270 | < th | dose independent | rect. | 15 | 6 |
| 802 | 125.97 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 21 | 18 |
| 810 | 126.02 | temperature | 15.0 | 270 | > th | dose independent | rect. | 9 | 6 |
| 811 | 126.02 | wind | 7.0 | 90 | < th | dose independent | rect. | 21 | 8 |
| 820 | 126.06 | wind | 7.0 | 270 | < th | dose independent | rect. | 16 | 3 |
| 827 | 126.08 | wind | 3.0 | 270 | > th | dose independent | rect. | 16 | 3 |
| 864 | 126.21 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 18 | 16 |
| 867 | 126.21 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 18 | 16 |
| 869 | 126.23 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 11 | 8 |
| 874 | 126.23 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 19 | 16 |
| 877 | 126.23 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 19 | 16 |
| 888 | 126.27 | atmosphere | 1005.0 | 10 | > th | dose independent | rect. | 12 | 6 |
| 890 | 126.27 | temperature | 15.0 | 270 | > th | dose independent | rect. | 21 | 18 |
| 895 | 126.28 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 10 | 8 |
| 896 | 126.28 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 10 | 8 |
| 911 | 126.33 | temperature | 10.0 | 270 | > th | dose independent | rect. | 19 | 9 |
| 912 | 126.33 | temperature | 30.0 | 270 | < th | dose independent | rect. | 19 | 9 |
| 913 | 126.33 | humidity | 50.0 | 270 | > th | dose independent | rect. | 19 | 9 |
| 914 | 126.33 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 19 | 9 |
| 915 | 126.33 | radiation | 1.0 | 270 | < th | dose independent | rect. | 19 | 9 |
| 921 | 126.33 | temperature | 10.0 | 270 | > th | dose independent | rect. | 4 | 15 |
| 922 | 126.33 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 4 | 15 |
| 925 | 126.33 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 19 | 9 |
| 932 | 126.34 | temperature | 10.0 | 90 | > th | dose independent | rect. | 21 | 8 |
| 933 | 126.34 | temperature | 30.0 | 90 | < th | dose independent | rect. | 21 | 8 |
| 934 | 126.34 | humidity | 50.0 | 90 | > th | dose independent | rect. | 21 | 8 |
| 937 | 126.34 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 21 | 8 |
| 938 | 126.34 | radiation | 1.0 | 90 | < th | dose independent | rect. | 21 | 8 |
| 947 | 126.35 | wind | 3.0 | 270 | > th | dose independent | rect. | 15 | 5 |
| 951 | 126.35 | radiation | 20.0 | 90 | < th | dose dependent | rect. | 21 | 8 |
| 963 | 126.39 | wind | 9.0 | 270 | < th | dose independent | rect. | 15 | 18 |
| 975 | 126.43 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 21 | 18 |
| 977 | 126.43 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 21 | 18 |
| 997 | 126.45 | temperature | 10.0 | 30 | > th | dose independent | rect. | 10 | 8 |
| 999 | 126.45 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 10 | 8 |