BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0355900 Os03g0355900|Os03g0355900
(333 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G31530.2 | chr4:15282281-15284064 FORWARD LENGTH=339 384 e-107
AT2G37660.1 | chr2:15795481-15796977 REVERSE LENGTH=326 85 5e-17
AT2G34460.1 | chr2:14529635-14530732 FORWARD LENGTH=281 75 5e-14
AT5G02240.1 | chr5:451502-452984 FORWARD LENGTH=254 74 1e-13
AT3G18890.1 | chr3:6511169-6514729 FORWARD LENGTH=642 61 8e-10
AT4G18810.2 | chr4:10322263-10325735 REVERSE LENGTH=628 55 6e-08
>AT4G31530.2 | chr4:15282281-15284064 FORWARD LENGTH=339
Length = 338
Score = 384 bits (986), Expect = e-107, Method: Compositional matrix adjust.
Identities = 179/246 (72%), Positives = 210/246 (85%), Gaps = 14/246 (5%)
Query: 102 ASLLSRNIKTRLLLRDPAKAVTLFGEQDESVFQAYKADTRNAAELDPEIFEGVTHVICTT 161
ASLL RNI++RLLLRD KA LFG+QDE Q K DTRNA +LDP +FEGVTHVICTT
Sbjct: 91 ASLLKRNIRSRLLLRDLDKATKLFGKQDEYSLQVVKGDTRNAEDLDPSMFEGVTHVICTT 150
Query: 162 GTTAFPSKRWDGDNTPERVDWDGTRNLVSAMPRTIKRLVLVSSIGVTKYNELPWSIMNLF 221
GTTAFPSKRW+ +NTPE+VDW+G +NL+SA+P ++KR+VLVSS+GVTK NELPWSIMNLF
Sbjct: 151 GTTAFPSKRWNEENTPEKVDWEGVKNLISALPSSVKRVVLVSSVGVTKSNELPWSIMNLF 210
Query: 222 GVLKYKKMAEDFVQNSGIPFTIIRPGRLTDGPYTSYDLNTLLQATAGERRAVVMGEGDKL 281
GVLKYKKM EDF+++SG+PFTIIRPGRLTDGPYTSYDLNTLL+ATAGERRAVV+G+GD L
Sbjct: 211 GVLKYKKMGEDFLRDSGLPFTIIRPGRLTDGPYTSYDLNTLLKATAGERRAVVIGQGDNL 270
Query: 282 VGEASRLVVAEACIQALDIEFTEGQIYEINSVK--------------GEGPGSDPEKWKE 327
VGE SRLVVAEACIQALDIEFT+G+ YEINSVK G+GPGSDP++W+E
Sbjct: 271 VGEVSRLVVAEACIQALDIEFTQGKAYEINSVKVPQTVSLKFEQSGNGDGPGSDPQQWRE 330
Query: 328 LFRAVQ 333
LF+A +
Sbjct: 331 LFKAAE 336
>AT2G37660.1 | chr2:15795481-15796977 REVERSE LENGTH=326
Length = 325
Score = 85.1 bits (209), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 69/216 (31%), Positives = 109/216 (50%), Gaps = 34/216 (15%)
Query: 134 QAYKADTRNAAELDPEIFEGVTHVICTTGTT-----AF-PSKR------WDGDNTPERVD 181
+ + D R+ A + P + EG+ ++ T F PSK +D PE+VD
Sbjct: 123 EVFIGDIRDTASIAPAV-EGIDALVILTSAVPQMKPGFDPSKGGRPEFFFDDGAYPEQVD 181
Query: 182 WDGTRNLVSAMPRT-IKRLVLVSSIGVTKYNELPWSIMNLFGVLKYKKMAEDFVQNSGIP 240
W G +N + A +K++VLV S+G T N SI N +L +K+ AE ++ +SGIP
Sbjct: 182 WIGQKNQIDAAKAAGVKQIVLVGSMGGTNINHPLNSIGNA-NILVWKRKAEQYLADSGIP 240
Query: 241 FTIIRPGRLTDGPYTSYDLNTLLQATAGERRAVVMGEGDKLVGEASRLV----VAEACIQ 296
+TIIR G L D G R +++G+ D+L+ +R + VAE C+Q
Sbjct: 241 YTIIRAGGLQD--------------KDGGIRELLVGKDDELLETETRTIARADVAEVCVQ 286
Query: 297 ALDIEFTEGQIYEINSVKGEGPGSDPEKWKELFRAV 332
AL +E + + ++ S K EG G+ + +K LF V
Sbjct: 287 ALQLEEAKFKALDLAS-KPEGTGTPTKDFKALFTQV 321
>AT2G34460.1 | chr2:14529635-14530732 FORWARD LENGTH=281
Length = 280
Score = 75.1 bits (183), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 82/240 (34%), Positives = 116/240 (48%), Gaps = 37/240 (15%)
Query: 104 LLSRNIKTRLLLRDPAKAVTLFGEQDESVFQAYKAD-TRNAAELDPEIFEGVTHVICTTG 162
LLSR + +RD KA T F +D+ Q +AD T +L I + VIC TG
Sbjct: 66 LLSRGFAVKAGVRDVEKAKTSF--KDDPSLQIVRADVTEGPDKLAEVIGDDSQAVICATG 123
Query: 163 TTAFPSKRWDGD-NTPERVDWDGTRNLVSAMPRT-IKRLVLVSSIGVT-----KYNELPW 215
R D TP +VD GT NLV A + +++ VLVSSI V + +
Sbjct: 124 F------RPGFDIFTPWKVDNFGTVNLVDACRKQGVEKFVLVSSILVNGAAMGQILNPAY 177
Query: 216 SIMNLFGV-LKYKKMAEDFVQNSGIPFTIIRPGRLTDGPYTSYDLNTLLQATAGERRAVV 274
+NLFG+ L K AE +++ SGI +TI+RPG L + P T VV
Sbjct: 178 LFLNLFGLTLVAKLQAEKYIKKSGINYTIVRPGGLKNDPPTG---------------NVV 222
Query: 275 MGEGDKLV-GEASRLVVAEACIQALDIEFTEGQIYEINSVKGEGPGSDPEKWKELFRAVQ 333
M D L G SR +VAE ++AL E + ++ EI + + E P +K+LF +V+
Sbjct: 223 MEPEDTLYEGSISRDLVAEVAVEALLQEESSFKVVEIVA-RAEAP---KRSYKDLFASVK 278
>AT5G02240.1 | chr5:451502-452984 FORWARD LENGTH=254
Length = 253
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 68/238 (28%), Positives = 111/238 (46%), Gaps = 43/238 (18%)
Query: 114 LLRDPAKAVTLFGEQDESVFQAYKADTRNAAELDPEIFEGVTHVICTTGTTAFPSKRWDG 173
L+R + GE D + AD+ N A F+G+ ++ T +A P +
Sbjct: 36 LVRSAQGKEKIGGEADVFIGDITDADSINPA------FQGIDALVILT--SAVPKMKPGF 87
Query: 174 DNT--------------PERVDWDGTRNLVSAMPRT-IKRLVLVSSIGVTKYNELPWSIM 218
D T PE+VDW G +N + A +K +V+V S+G T + P + +
Sbjct: 88 DPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAGVKHIVVVGSMGGTNPDH-PLNKL 146
Query: 219 NLFGVLKYKKMAEDFVQNSGIPFTIIRPGRLTDGPYTSYDLNTLLQATAGERRAVVMGEG 278
+L +K+ AE ++ +SG P+TIIR G L D G R +++G+
Sbjct: 147 GNGNILVWKRKAEQYLADSGTPYTIIRAGGLLD--------------KEGGVRELLVGKD 192
Query: 279 DKLVGEASRLV----VAEACIQALDIEFTEGQIYEINSVKGEGPGSDPEKWKELFRAV 332
D+L+ ++ V VAE CIQAL E + + +++ S K EG + + +K LF V
Sbjct: 193 DELLQTDTKTVPRADVAEVCIQALLFEEAKNKAFDLGS-KPEGTSTPTKDFKALFSQV 249
>AT3G18890.1 | chr3:6511169-6514729 FORWARD LENGTH=642
Length = 641
Score = 61.2 bits (147), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 54/162 (33%), Positives = 86/162 (53%), Gaps = 27/162 (16%)
Query: 157 VICTTGTTAFPSKRWDGDNT-PERVDWDGTRNLV-SAMPRTIKRLVLVSSIGVTKYNELP 214
+IC G S++ D T P R+D+ T+NLV +A + +LV+S+G K+ P
Sbjct: 166 IICCIGA----SEKEISDITGPYRIDYLATKNLVDAATSAKVNNFILVTSLGTNKFG-FP 220
Query: 215 WSIMNLF-GVLKYKKMAEDFVQNSGIPFTIIRPG---RLTDGPYTSYDLNTLLQATAGER 270
+I+NLF GVL +K+ AE+ + SG+ + I+RPG R TD +++L L T
Sbjct: 221 AAILNLFWGVLCWKRKAEEALIESGLNYAIVRPGGMERPTDAYKETHNLTLALDDT---- 276
Query: 271 RAVVMGEGDKLVGEASRLVVAE--ACIQALDIEFTEGQIYEI 310
+ G G+ S L VAE AC+ A + + + +I E+
Sbjct: 277 ---LFG------GQVSNLQVAELLACM-AKNPQLSFSKIVEV 308
>AT4G18810.2 | chr4:10322263-10325735 REVERSE LENGTH=628
Length = 627
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 72/156 (46%), Gaps = 37/156 (23%)
Query: 198 RLVLVSSIGVTK--------YNELPWSIMN--LFGVLKYKKMAEDFVQNSGIPFTIIRPG 247
R V V S GVT+ + P +N L +L YK ED +++SGIPF I+RP
Sbjct: 442 RFVHVGSAGVTRPERPGLDLSKQPPAVRLNKELDFILTYKLKGEDLIRDSGIPFAIVRPC 501
Query: 248 RLTDGPYTSYDLNTLLQATAGERRAVVMGEGDKLVGEASRLVVAEACIQALDIEFTEGQI 307
LT+ P AG ++ +GD + G+ SR VA CI AL+ + +
Sbjct: 502 ALTEEP-------------AGA--DLIFEQGDNITGKVSRDEVARICIAALESPYALNKT 546
Query: 308 YEINS---------VKGEGPGSDPEK-WKELFRAVQ 333
+E+ S V E P PEK + E F+ ++
Sbjct: 547 FEVKSTVPFSEPFTVDPENP--PPEKDYNEYFKTLK 580
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.134 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,958,322
Number of extensions: 217459
Number of successful extensions: 526
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 520
Number of HSP's successfully gapped: 6
Length of query: 333
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 234
Effective length of database: 8,392,385
Effective search space: 1963818090
Effective search space used: 1963818090
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 112 (47.8 bits)