Os03g0822200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : NAD-dependent epimerase/dehydratase family protein.
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Os03g0822200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : NAD-dependent epimerase/dehydratase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 32.91 | 0.27 | 13.6 | -0.57 | 0.691 | 1.17 | 0.589 | 0.222 | -0.346 | 8.6 | 20.79 | 88 | -- | -- |
| 32.68 | 0.266 | 13.6 | -0.57 | 0.703 | 1.18 | 0.578 | -- | -0.355 | 8.46 | 22.09 | 94 | -- | -- |
| 33.88 | 0.271 | 13.6 | -0.559 | 0.688 | 1.18 | -- | 0.327 | -0.346 | 8.35 | 21.57 | 83 | -- | -- |
| 33.75 | 0.271 | 13.6 | -0.582 | 0.715 | 1.2 | -- | -- | -0.348 | 8.31 | 22.41 | 83 | -- | -- |
| 54.2 | 0.345 | 13.6 | -0.477 | -- | 1.28 | -- | 0.758 | -0.334 | -- | 19.07 | 17 | -- | -- |
| 55.2 | 0.348 | 13.6 | -0.364 | 0.748 | -- | 0.859 | -- | -0.158 | 11 | -- | -- | -- | -- |
| 58.29 | 0.358 | 13.6 | -0.33 | 0.745 | -- | -- | -- | -0.155 | 10.9 | -- | -- | -- | -- |
| 54.27 | 0.345 | 13.6 | -0.587 | -- | 1.27 | -- | -- | -0.363 | -- | 20.8 | 14 | -- | -- |
| 41.97 | 0.302 | 13.6 | -- | 0.716 | 1.05 | -- | -- | -0.248 | 8.65 | 23 | 89 | -- | -- |
| 92.77 | 0.45 | 13.6 | -0.346 | -- | -- | -- | -- | -0.16 | -- | -- | -- | -- | -- |
| 61.16 | 0.366 | 13.6 | -- | 0.748 | -- | -- | -- | -0.119 | 10.9 | -- | -- | -- | -- |
| 63 | 0.371 | 13.6 | -- | -- | 1.15 | -- | -- | -0.281 | -- | 20.93 | 17 | -- | -- |
| 95.93 | 0.457 | 13.6 | -- | -- | -- | -- | -- | -0.122 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 32.42 | temperature | 20 | 90 | > th | dose dependent | rect. | 23 | 23 |
| 4 | 33.15 | temperature | 20 | 90 | > th | dose dependent | no | NA | NA |
| 6 | 33.30 | temperature | 10 | 90 | > th | dose dependent | no | NA | NA |
| 15 | 33.68 | temperature | 15 | 270 | > th | dose dependent | rect. | 4 | 23 |
| 23 | 33.90 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 28 | 33.97 | temperature | 15 | 270 | > th | dose dependent | rect. | 19 | 23 |
| 30 | 34.01 | temperature | 20 | 90 | > th | dose dependent | rect. | 6 | 23 |
| 48 | 34.30 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 51 | 34.35 | temperature | 20 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 53 | 34.38 | temperature | 30 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 54 | 34.41 | temperature | 30 | 30 | < th | dose dependent | no | NA | NA |
| 59 | 34.44 | temperature | 20 | 270 | > th | dose dependent | rect. | 13 | 23 |
| 60 | 34.44 | temperature | 30 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 85 | 34.66 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 89 | 34.70 | temperature | 10 | 720 | > th | dose dependent | rect. | 13 | 22 |
| 100 | 34.76 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 23 |
| 111 | 34.84 | temperature | 30 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 118 | 34.93 | temperature | 30 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 135 | 35.01 | temperature | 30 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 137 | 35.02 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 188 | 35.34 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 2 |
| 190 | 35.35 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 245 | 35.55 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 5 |
| 254 | 35.58 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 7 |
| 293 | 35.64 | temperature | 20 | 270 | > th | dose dependent | rect. | 10 | 23 |
| 294 | 35.65 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 346 | 35.73 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 23 |
| 412 | 35.85 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 502 | 35.98 | temperature | 30 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 503 | 35.99 | temperature | 25 | 1440 | > th | dose dependent | sin | 21 | NA |
| 649 | 36.16 | temperature | 10 | 90 | > th | dose dependent | sin | 23 | NA |
| 650 | 36.16 | temperature | 10 | 270 | > th | dose dependent | sin | 1 | NA |
| 656 | 36.17 | wind | 5 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 657 | 36.17 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 1 |
| 808 | 36.34 | wind | 9 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 858 | 36.37 | temperature | 20 | 720 | > th | dose dependent | rect. | 19 | 16 |
| 871 | 36.38 | wind | 7 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 900 | 36.39 | temperature | 30 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 901 | 36.40 | wind | 9 | 43200 | > th | dose independent | rect. | 17 | 4 |