BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0822200 Os03g0822200|AK069405
(257 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G37660.1 | chr2:15795481-15796977 REVERSE LENGTH=326 430 e-121
AT5G02240.1 | chr5:451502-452984 FORWARD LENGTH=254 417 e-117
AT2G34460.1 | chr2:14529635-14530732 FORWARD LENGTH=281 90 1e-18
AT4G31530.2 | chr4:15282281-15284064 FORWARD LENGTH=339 88 4e-18
AT3G18890.1 | chr3:6511169-6514729 FORWARD LENGTH=642 66 1e-11
AT1G16720.1 | chr1:5723161-5726248 FORWARD LENGTH=599 58 6e-09
AT4G18810.2 | chr4:10322263-10325735 REVERSE LENGTH=628 52 4e-07
>AT2G37660.1 | chr2:15795481-15796977 REVERSE LENGTH=326
Length = 325
Score = 430 bits (1105), Expect = e-121, Method: Compositional matrix adjust.
Identities = 200/248 (80%), Positives = 226/248 (91%)
Query: 10 TVLVTGAGGRTGNIVYNKLKERSDQFVVRGLVRTEESKQKIGGGNDVYIADIRDRDHLVP 69
TVLVTGAGGRTG IVY KLKERS+QFV RGLVRT+ESK+KI G ++V+I DIRD + P
Sbjct: 78 TVLVTGAGGRTGQIVYKKLKERSEQFVARGLVRTKESKEKINGEDEVFIGDIRDTASIAP 137
Query: 70 AVQGVDALIILTSAVPKMKPGFDPSKGGRPEFYYEDGMYPEQVDWIGQKNQIDTAKAAGV 129
AV+G+DAL+ILTSAVP+MKPGFDPSKGGRPEF+++DG YPEQVDWIGQKNQID AKAAGV
Sbjct: 138 AVEGIDALVILTSAVPQMKPGFDPSKGGRPEFFFDDGAYPEQVDWIGQKNQIDAAKAAGV 197
Query: 130 KHIVLVGSMGGTNPNHPLNSLGNGNILVWKRKSEQYLADSGVPYTIIRPGGLQDKDGGVR 189
K IVLVGSMGGTN NHPLNS+GN NILVWKRK+EQYLADSG+PYTIIR GGLQDKDGG+R
Sbjct: 198 KQIVLVGSMGGTNINHPLNSIGNANILVWKRKAEQYLADSGIPYTIIRAGGLQDKDGGIR 257
Query: 190 ELIVGNDDELLQTDTKSIPRADVAEVCVQALQYEETKFKAFDLASKPEGTGTPTKDFKSL 249
EL+VG DDELL+T+T++I RADVAEVCVQALQ EE KFKA DLASKPEGTGTPTKDFK+L
Sbjct: 258 ELLVGKDDELLETETRTIARADVAEVCVQALQLEEAKFKALDLASKPEGTGTPTKDFKAL 317
Query: 250 FSQVTARF 257
F+QVT +F
Sbjct: 318 FTQVTTKF 325
>AT5G02240.1 | chr5:451502-452984 FORWARD LENGTH=254
Length = 253
Score = 417 bits (1073), Expect = e-117, Method: Compositional matrix adjust.
Identities = 199/252 (78%), Positives = 221/252 (87%)
Query: 6 AARPTVLVTGAGGRTGNIVYNKLKERSDQFVVRGLVRTEESKQKIGGGNDVYIADIRDRD 65
A PTVLVTGA GRTG IVY KLKE SD+FV +GLVR+ + K+KIGG DV+I DI D D
Sbjct: 2 ANLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGGEADVFIGDITDAD 61
Query: 66 HLVPAVQGVDALIILTSAVPKMKPGFDPSKGGRPEFYYEDGMYPEQVDWIGQKNQIDTAK 125
+ PA QG+DAL+ILTSAVPKMKPGFDP+KGGRPEF +EDG YPEQVDWIGQKNQID AK
Sbjct: 62 SINPAFQGIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAK 121
Query: 126 AAGVKHIVLVGSMGGTNPNHPLNSLGNGNILVWKRKSEQYLADSGVPYTIIRPGGLQDKD 185
AGVKHIV+VGSMGGTNP+HPLN LGNGNILVWKRK+EQYLADSG PYTIIR GGL DK+
Sbjct: 122 VAGVKHIVVVGSMGGTNPDHPLNKLGNGNILVWKRKAEQYLADSGTPYTIIRAGGLLDKE 181
Query: 186 GGVRELIVGNDDELLQTDTKSIPRADVAEVCVQALQYEETKFKAFDLASKPEGTGTPTKD 245
GGVREL+VG DDELLQTDTK++PRADVAEVC+QAL +EE K KAFDL SKPEGT TPTKD
Sbjct: 182 GGVRELLVGKDDELLQTDTKTVPRADVAEVCIQALLFEEAKNKAFDLGSKPEGTSTPTKD 241
Query: 246 FKSLFSQVTARF 257
FK+LFSQVT+RF
Sbjct: 242 FKALFSQVTSRF 253
>AT2G34460.1 | chr2:14529635-14530732 FORWARD LENGTH=281
Length = 280
Score = 89.7 bits (221), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 83/264 (31%), Positives = 128/264 (48%), Gaps = 38/264 (14%)
Query: 2 ADSSAARPTVLVTGAGGRTGNIVYNKLKERSDQFVVRGLVRTEESKQKIGGGND----VY 57
A+++ V V GA G+TG + +L R F V+ VR E K K +D +
Sbjct: 40 AENAVKTKKVFVAGATGQTGKRIVEQLLSRG--FAVKAGVRDVE-KAKTSFKDDPSLQIV 96
Query: 58 IADIRDRDHLVPAVQGVDALIILTSAVPKMKPGFDPSKGGRPEFYYEDGMYPEQVDWIGQ 117
AD+ + + V G D+ ++ + +PGFD P +VD G
Sbjct: 97 RADVTEGPDKLAEVIGDDSQAVICAT--GFRPGFDI-------------FTPWKVDNFGT 141
Query: 118 KNQIDTAKAAGVKHIVLVGS-------MGGT-NPNHPLNSLGNGNILVWKRKSEQYLADS 169
N +D + GV+ VLV S MG NP + +L G LV K ++E+Y+ S
Sbjct: 142 VNLVDACRKQGVEKFVLVSSILVNGAAMGQILNPAYLFLNL-FGLTLVAKLQAEKYIKKS 200
Query: 170 GVPYTIIRPGGLQDKDGGVRELIVGNDDELLQTDTKSIPRADVAEVCVQALQYEETKFKA 229
G+ YTI+RPGGL++ D +++ +D L + SI R VAEV V+AL EE+ FK
Sbjct: 201 GINYTIVRPGGLKN-DPPTGNVVMEPEDTLYEG---SISRDLVAEVAVEALLQEESSFKV 256
Query: 230 FDLASKPEGTGTPTKDFKSLFSQV 253
++ ++ E P + +K LF+ V
Sbjct: 257 VEIVARAEA---PKRSYKDLFASV 277
>AT4G31530.2 | chr4:15282281-15284064 FORWARD LENGTH=339
Length = 338
Score = 88.2 bits (217), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 70/218 (32%), Positives = 104/218 (47%), Gaps = 38/218 (17%)
Query: 38 RGLVRTEESKQKIGGGNDVYI-----ADIRDRDHLVPAV-QGVDALIILTSAVPKMKPGF 91
R L+R + K+ G D Y D R+ + L P++ +GV +I T
Sbjct: 101 RLLLRDLDKATKLFGKQDEYSLQVVKGDTRNAEDLDPSMFEGVTHVICTTGTT------- 153
Query: 92 DPSKGGRPEFYYEDGMYPEQVDWIGQKNQIDTAKAAGVKHIVLVGSMGGTNPNH-PLNSL 150
P + + PE+VDW G KN I +A + VK +VLV S+G T N P + +
Sbjct: 154 -----AFPSKRWNEENTPEKVDWEGVKNLI-SALPSSVKRVVLVSSVGVTKSNELPWSIM 207
Query: 151 GNGNILVWKRKSEQYLADSGVPYTIIRPGGLQD--------------KDGGVRELIVGND 196
+L +K+ E +L DSG+P+TIIRPG L D G R +++G
Sbjct: 208 NLFGVLKYKKMGEDFLRDSGLPFTIIRPGRLTDGPYTSYDLNTLLKATAGERRAVVIGQG 267
Query: 197 DELLQTDTKSIPRADVAEVCVQALQYEETKFKAFDLAS 234
D L+ + R VAE C+QAL E T+ KA+++ S
Sbjct: 268 DNLV----GEVSRLVVAEACIQALDIEFTQGKAYEINS 301
>AT3G18890.1 | chr3:6511169-6514729 FORWARD LENGTH=642
Length = 641
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 88/212 (41%), Gaps = 39/212 (18%)
Query: 11 VLVTGAGGRTGNIVYNKLKERSDQFVVRGLVRT------------EESKQKIGGGN---- 54
V V GA G+ G+ +L + F VR VR+ E Q G
Sbjct: 84 VFVAGATGKVGSRTVRELLKLG--FRVRAGVRSAQRAGSLVQSVKEMKLQNTDEGTQPVE 141
Query: 55 --DVYIADIRDRDHLVPAVQGVDALIILTSAVPKMKPGFDPSKGGRPEFYYEDGMYPEQV 112
++ D+ +D + PA+ +I G E D P ++
Sbjct: 142 KLEIVECDLEKKDSIQPALGNASVIICCI---------------GASEKEISDITGPYRI 186
Query: 113 DWIGQKNQIDTAKAAGVKHIVLVGSMGGTNPNHPLNSLG-NGNILVWKRKSEQYLADSGV 171
D++ KN +D A +A V + +LV S+G P L +L WKRK+E+ L +SG+
Sbjct: 187 DYLATKNLVDAATSAKVNNFILVTSLGTNKFGFPAAILNLFWGVLCWKRKAEEALIESGL 246
Query: 172 PYTIIRPGGLQDKDGGVRE---LIVGNDDELL 200
Y I+RPGG++ +E L + DD L
Sbjct: 247 NYAIVRPGGMERPTDAYKETHNLTLALDDTLF 278
>AT1G16720.1 | chr1:5723161-5726248 FORWARD LENGTH=599
Length = 598
Score = 57.8 bits (138), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 46/80 (57%), Gaps = 4/80 (5%)
Query: 154 NILVWKRKSEQYLADSGVPYTIIRPGGLQDKDGGVRELIVGNDDELLQTDTKSIPRADVA 213
+L KR E L SG+ YTIIRPG L+++ GG R LI + + Q I ADVA
Sbjct: 486 QVLKAKRAGEDSLRRSGLGYTIIRPGPLKEEPGGQRALIFDQGNRISQ----GISCADVA 541
Query: 214 EVCVQALQYEETKFKAFDLA 233
++CV+AL + K+FD+
Sbjct: 542 DICVKALHDSTARNKSFDVC 561
>AT4G18810.2 | chr4:10322263-10325735 REVERSE LENGTH=628
Length = 627
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 52/115 (45%), Gaps = 16/115 (13%)
Query: 131 HIVLVGSMGGTNPNHPLNSLGNGN-----------ILVWKRKSEQYLADSGVPYTIIRPG 179
V VGS G T P P L IL +K K E + DSG+P+ I+RP
Sbjct: 442 RFVHVGSAGVTRPERPGLDLSKQPPAVRLNKELDFILTYKLKGEDLIRDSGIPFAIVRPC 501
Query: 180 GLQDKDGGVRELIVGNDDELLQTDTKSIPRADVAEVCVQALQYEETKFKAFDLAS 234
L ++ G +LI D + T + R +VA +C+ AL+ K F++ S
Sbjct: 502 ALTEEPAGA-DLIFEQGDNI----TGKVSRDEVARICIAALESPYALNKTFEVKS 551
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.315 0.136 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,061,032
Number of extensions: 274209
Number of successful extensions: 430
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 421
Number of HSP's successfully gapped: 8
Length of query: 257
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 161
Effective length of database: 8,474,633
Effective search space: 1364415913
Effective search space used: 1364415913
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 110 (47.0 bits)