BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0822200 Os03g0822200|AK069405
(257 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0822200 NAD-dependent epimerase/dehydratase family pro... 527 e-150
Os05g0110300 NAD-dependent epimerase/dehydratase family pro... 418 e-117
Os06g0360300 NAD-dependent epimerase/dehydratase family pro... 92 4e-19
Os03g0355900 NmrA-like family protein 85 6e-17
>Os03g0822200 NAD-dependent epimerase/dehydratase family protein
Length = 257
Score = 527 bits (1357), Expect = e-150, Method: Compositional matrix adjust.
Identities = 257/257 (100%), Positives = 257/257 (100%)
Query: 1 MADSSAARPTVLVTGAGGRTGNIVYNKLKERSDQFVVRGLVRTEESKQKIGGGNDVYIAD 60
MADSSAARPTVLVTGAGGRTGNIVYNKLKERSDQFVVRGLVRTEESKQKIGGGNDVYIAD
Sbjct: 1 MADSSAARPTVLVTGAGGRTGNIVYNKLKERSDQFVVRGLVRTEESKQKIGGGNDVYIAD 60
Query: 61 IRDRDHLVPAVQGVDALIILTSAVPKMKPGFDPSKGGRPEFYYEDGMYPEQVDWIGQKNQ 120
IRDRDHLVPAVQGVDALIILTSAVPKMKPGFDPSKGGRPEFYYEDGMYPEQVDWIGQKNQ
Sbjct: 61 IRDRDHLVPAVQGVDALIILTSAVPKMKPGFDPSKGGRPEFYYEDGMYPEQVDWIGQKNQ 120
Query: 121 IDTAKAAGVKHIVLVGSMGGTNPNHPLNSLGNGNILVWKRKSEQYLADSGVPYTIIRPGG 180
IDTAKAAGVKHIVLVGSMGGTNPNHPLNSLGNGNILVWKRKSEQYLADSGVPYTIIRPGG
Sbjct: 121 IDTAKAAGVKHIVLVGSMGGTNPNHPLNSLGNGNILVWKRKSEQYLADSGVPYTIIRPGG 180
Query: 181 LQDKDGGVRELIVGNDDELLQTDTKSIPRADVAEVCVQALQYEETKFKAFDLASKPEGTG 240
LQDKDGGVRELIVGNDDELLQTDTKSIPRADVAEVCVQALQYEETKFKAFDLASKPEGTG
Sbjct: 181 LQDKDGGVRELIVGNDDELLQTDTKSIPRADVAEVCVQALQYEETKFKAFDLASKPEGTG 240
Query: 241 TPTKDFKSLFSQVTARF 257
TPTKDFKSLFSQVTARF
Sbjct: 241 TPTKDFKSLFSQVTARF 257
>Os05g0110300 NAD-dependent epimerase/dehydratase family protein
Length = 293
Score = 418 bits (1074), Expect = e-117, Method: Compositional matrix adjust.
Identities = 197/249 (79%), Positives = 221/249 (88%)
Query: 9 PTVLVTGAGGRTGNIVYNKLKERSDQFVVRGLVRTEESKQKIGGGNDVYIADIRDRDHLV 68
PTVLVTGAGGRTG IVY KLKER+DQFV RGLVRTEESK KIGG DV++ DIRD +
Sbjct: 45 PTVLVTGAGGRTGQIVYKKLKERADQFVGRGLVRTEESKAKIGGAADVFVGDIRDPASIA 104
Query: 69 PAVQGVDALIILTSAVPKMKPGFDPSKGGRPEFYYEDGMYPEQVDWIGQKNQIDTAKAAG 128
PA+ G+DALIILTSAVPKMKPGFDPSKGGRPEFY+EDG YPEQVDWIGQ+NQID AK+ G
Sbjct: 105 PAIDGIDALIILTSAVPKMKPGFDPSKGGRPEFYFEDGSYPEQVDWIGQRNQIDAAKSIG 164
Query: 129 VKHIVLVGSMGGTNPNHPLNSLGNGNILVWKRKSEQYLADSGVPYTIIRPGGLQDKDGGV 188
VK +VLVGSMGGT+ NHPLN LGN NILVWKRK+EQYLADSG+PYTIIR GGLQDKDGGV
Sbjct: 165 VKQVVLVGSMGGTDVNHPLNKLGNANILVWKRKAEQYLADSGLPYTIIRAGGLQDKDGGV 224
Query: 189 RELIVGNDDELLQTDTKSIPRADVAEVCVQALQYEETKFKAFDLASKPEGTGTPTKDFKS 248
REL+VG DDE+L+T+TK+I RADVAEVC+QAL +EE +FKAFDLASKPEG G PT DF++
Sbjct: 225 RELLVGKDDEILKTETKTITRADVAEVCLQALLFEEARFKAFDLASKPEGEGVPTTDFRA 284
Query: 249 LFSQVTARF 257
LFSQV +RF
Sbjct: 285 LFSQVNSRF 293
>Os06g0360300 NAD-dependent epimerase/dehydratase family protein
Length = 291
Score = 92.0 bits (227), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 81/255 (31%), Positives = 126/255 (49%), Gaps = 35/255 (13%)
Query: 10 TVLVTGAGGRTGNIVYNKLKERSDQFVVRGLVRTEESKQKIGGGNDVYI--ADIRD-RDH 66
TV V G+ GRTG V KL ER VV G +++ + ++ + AD+ + D
Sbjct: 59 TVFVAGSTGRTGKRVVEKLLERGFG-VVAGTTDVGRARRSLPQDPNLQLVRADVMEGTDK 117
Query: 67 LVPAVQGVDALIILTSAVPKMKPGFDPSKGGRPEFYYEDGMYPEQVDWIGQKNQIDTAKA 126
LV A++G DA++ T + FDP P +VD G N ++ +
Sbjct: 118 LVDAIRGADAVVCATG----FRRSFDP-------------FAPWKVDNFGTVNLVEACRK 160
Query: 127 AGVKHIVLVGS-------MGGT-NPNHPLNSLGNGNILVWKRKSEQYLADSGVPYTIIRP 178
AGV +LV S MG NP + + +L G +LV K ++E+++ SG+ YTIIRP
Sbjct: 161 AGVTRFILVSSILVNGAAMGQLLNPAYTVLNL-FGLVLVAKLQAEKHIRSSGINYTIIRP 219
Query: 179 GGLQDKDGGVRELIVGNDDELLQTDTKSIPRADVAEVCVQALQY-EETKFKAFDLASKPE 237
GGL ++ +++ +D L + SI R VAEV V+AL EE+ +K ++ ++ E
Sbjct: 220 GGLTEQP-PTGNIVMEPEDTLYE---GSISRQQVAEVAVEALLCREESSYKVVEIVTRAE 275
Query: 238 GTGTPTKDFKSLFSQ 252
P KD + Q
Sbjct: 276 AHNRPLKDLFASIKQ 290
>Os03g0355900 NmrA-like family protein
Length = 333
Score = 84.7 bits (208), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 68/214 (31%), Positives = 109/214 (50%), Gaps = 34/214 (15%)
Query: 57 YIADIRDRDHLVPAV-QGVDALIILTSAVPKMKPGFDPSKGGRPEFYYEDGMYPEQVDWI 115
Y AD R+ L P + +GV +I T F PSK ++ PE+VDW
Sbjct: 136 YKADTRNAAELDPEIFEGVTHVICTTGTT-----AF-PSK------RWDGDNTPERVDWD 183
Query: 116 GQKNQIDTAKAAGVKHIVLVGSMGGTNPNH-PLNSLGNGNILVWKRKSEQYLADSGVPYT 174
G +N + +A +K +VLV S+G T N P + + +L +K+ +E ++ +SG+P+T
Sbjct: 184 GTRNLV-SAMPRTIKRLVLVSSIGVTKYNELPWSIMNLFGVLKYKKMAEDFVQNSGIPFT 242
Query: 175 IIRPGGLQD--------------KDGGVRELIVGNDDELLQTDTKSIPRADVAEVCVQAL 220
IIRPG L D G R +++G D+L+ ++ + VAE C+QAL
Sbjct: 243 IIRPGRLTDGPYTSYDLNTLLQATAGERRAVVMGEGDKLVGEASRLV----VAEACIQAL 298
Query: 221 QYEETKFKAFDLAS-KPEGTGTPTKDFKSLFSQV 253
E T+ + +++ S K EG G+ + +K LF V
Sbjct: 299 DIEFTEGQIYEINSVKGEGPGSDPEKWKELFRAV 332
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.315 0.136 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,880,164
Number of extensions: 454775
Number of successful extensions: 785
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 785
Number of HSP's successfully gapped: 4
Length of query: 257
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 158
Effective length of database: 11,866,615
Effective search space: 1874925170
Effective search space used: 1874925170
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 155 (64.3 bits)