Os06g0360300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : NAD-dependent epimerase/dehydratase family protein.
FiT-DB / Search/ Help/ Sample detail
|
Os06g0360300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : NAD-dependent epimerase/dehydratase family protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 28.12 | 0.249 | 11.3 | 0.193 | 1.15 | -0.424 | 0.0954 | 1.25 | -0.251 | 6.69 | 81 | 1235 | -- | -- |
| 29.76 | 0.254 | 11.3 | 0.292 | 1.16 | -0.365 | 0.0909 | -- | -0.232 | 6.71 | 80 | 1209 | -- | -- |
| 28.03 | 0.247 | 11.3 | 0.196 | 1.17 | -0.395 | -- | 1.22 | -0.248 | 6.76 | 80.79 | 1150 | -- | -- |
| 29.78 | 0.254 | 11.3 | 0.298 | 1.16 | -0.358 | -- | -- | -0.229 | 6.71 | 80.1 | 1194 | -- | -- |
| 95.96 | 0.456 | 11.3 | 0.225 | -- | -0.642 | -- | 1.16 | -0.24 | -- | 80.37 | 1316 | -- | -- |
| 31.61 | 0.264 | 11.3 | 0.305 | 1.16 | -- | 0.0398 | -- | -0.206 | 6.5 | -- | -- | -- | -- |
| 31.62 | 0.263 | 11.3 | 0.306 | 1.16 | -- | -- | -- | -0.206 | 6.5 | -- | -- | -- | -- |
| 66.22 | 0.379 | 11.3 | 0.233 | -- | 0.827 | -- | -- | -0.138 | -- | 73.16 | 508 | -- | -- |
| 31.84 | 0.263 | 11.3 | -- | 1.18 | -0.396 | -- | -- | -0.256 | 6.76 | 77.97 | 1148 | -- | -- |
| 101.87 | 0.472 | 11.3 | 0.335 | -- | -- | -- | -- | -0.182 | -- | -- | -- | -- | -- |
| 34.09 | 0.273 | 11.3 | -- | 1.17 | -- | -- | -- | -0.241 | 6.48 | -- | -- | -- | -- |
| 69 | 0.387 | 11.3 | -- | -- | 0.829 | -- | -- | -0.181 | -- | 74.94 | 494 | -- | -- |
| 104.83 | 0.478 | 11.3 | -- | -- | -- | -- | -- | -0.219 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 26.64 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 2 | 26.83 | radiation | 10 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 3 | 26.83 | radiation | 10 | 1440 | < th | dose dependent | rect. | 12 | 3 |
| 10 | 27.05 | humidity | 80 | 1440 | > th | dose independent | rect. | 12 | 2 |
| 17 | 27.18 | humidity | 80 | 1440 | < th | dose independent | rect. | 13 | 1 |
| 18 | 27.19 | humidity | 90 | 720 | > th | dose dependent | rect. | 23 | 2 |
| 24 | 27.32 | humidity | 70 | 1440 | > th | dose dependent | rect. | 12 | 2 |
| 32 | 27.42 | humidity | 90 | 720 | > th | dose dependent | rect. | 20 | 6 |
| 46 | 27.54 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 70 | 27.72 | humidity | 90 | 720 | > th | dose independent | rect. | 21 | 4 |
| 75 | 27.76 | humidity | 90 | 720 | < th | dose independent | rect. | 23 | 1 |
| 81 | 27.80 | humidity | 90 | 720 | < th | dose independent | rect. | 19 | 6 |
| 104 | 27.89 | humidity | 90 | 720 | < th | dose dependent | rect. | 19 | 3 |
| 110 | 27.92 | humidity | 90 | 720 | > th | dose independent | rect. | 23 | 1 |
| 115 | 27.95 | humidity | 90 | 720 | < th | dose dependent | rect. | 19 | 5 |
| 117 | 27.97 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 5 |
| 123 | 27.98 | humidity | 90 | 720 | > th | dose dependent | sin | 15 | NA |
| 129 | 27.99 | humidity | 70 | 720 | > th | dose dependent | rect. | 20 | 10 |
| 131 | 27.99 | humidity | 90 | 720 | > th | dose dependent | rect. | 12 | 15 |
| 174 | 28.09 | radiation | 1 | 720 | > th | dose independent | rect. | 18 | 1 |
| 243 | 28.17 | radiation | 1 | 1440 | < th | dose independent | rect. | 12 | 3 |
| 301 | 28.23 | humidity | 50 | 720 | > th | dose dependent | sin | 11 | NA |
| 396 | 28.36 | humidity | 70 | 720 | > th | dose dependent | rect. | 20 | 20 |
| 424 | 28.40 | humidity | 90 | 720 | > th | dose independent | rect. | 20 | 9 |
| 493 | 28.48 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 1 |
| 504 | 28.49 | humidity | 90 | 720 | < th | dose dependent | sin | 13 | NA |
| 525 | 28.51 | atmosphere | 1005 | 720 | > th | dose independent | rect. | 20 | 6 |
| 526 | 28.51 | humidity | 90 | 720 | < th | dose independent | rect. | 12 | 14 |
| 547 | 28.53 | humidity | 80 | 1440 | < th | dose independent | rect. | 21 | 19 |
| 626 | 28.58 | humidity | 80 | 1440 | > th | dose independent | rect. | 22 | 19 |
| 638 | 28.59 | humidity | 90 | 720 | < th | dose independent | sin | 15 | NA |
| 701 | 28.62 | humidity | 90 | 720 | < th | dose independent | rect. | 10 | 16 |
| 714 | 28.63 | humidity | 90 | 720 | < th | dose independent | rect. | 14 | 11 |
| 748 | 28.65 | humidity | 80 | 720 | < th | dose independent | rect. | 12 | 10 |
| 806 | 28.67 | humidity | 90 | 10 | < th | dose independent | rect. | 17 | 14 |
| 822 | 28.68 | humidity | 80 | 1440 | > th | dose independent | sin | 22 | NA |
| 824 | 28.68 | humidity | 80 | 720 | < th | dose independent | rect. | 14 | 8 |
| 867 | 28.70 | humidity | 90 | 10 | < th | dose independent | rect. | 21 | 10 |
| 874 | 28.70 | humidity | 80 | 1440 | < th | dose independent | rect. | 1 | 16 |
| 881 | 28.70 | atmosphere | 1005 | 10 | < th | dose dependent | rect. | 1 | 9 |
| 942 | 28.73 | humidity | 80 | 1440 | < th | dose independent | sin | 23 | NA |
| 953 | 28.73 | atmosphere | 1005 | 10 | < th | dose dependent | rect. | 1 | 7 |