BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0360300 Os06g0360300|AK105919
(291 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G34460.1 | chr2:14529635-14530732 FORWARD LENGTH=281 345 2e-95
AT3G18890.1 | chr3:6511169-6514729 FORWARD LENGTH=642 112 2e-25
AT2G37660.1 | chr2:15795481-15796977 REVERSE LENGTH=326 86 2e-17
AT5G02240.1 | chr5:451502-452984 FORWARD LENGTH=254 77 7e-15
AT4G31530.2 | chr4:15282281-15284064 FORWARD LENGTH=339 68 5e-12
AT4G18810.2 | chr4:10322263-10325735 REVERSE LENGTH=628 54 1e-07
AT5G18660.1 | chr5:6220872-6222125 REVERSE LENGTH=418 50 1e-06
AT3G46780.1 | chr3:17228766-17231021 FORWARD LENGTH=511 50 2e-06
>AT2G34460.1 | chr2:14529635-14530732 FORWARD LENGTH=281
Length = 280
Score = 345 bits (885), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 170/231 (73%), Positives = 192/231 (83%), Gaps = 2/231 (0%)
Query: 60 VFVAGSTGRTGKRVVEKLLERGFGVVAGTTDVGRARRSLPQDPNLQLVRADVMEGTDKLV 119
VFVAG+TG+TGKR+VE+LL RGF V AG DV +A+ S DP+LQ+VRADV EG DKL
Sbjct: 49 VFVAGATGQTGKRIVEQLLSRGFAVKAGVRDVEKAKTSFKDDPSLQIVRADVTEGPDKLA 108
Query: 120 DAI-RGADAVVCATGFRRSFDPFAPWKVDNFGTVNLVEACRKAGVTRFILVSSILVNGAA 178
+ I + AV+CATGFR FD F PWKVDNFGTVNLV+ACRK GV +F+LVSSILVNGAA
Sbjct: 109 EVIGDDSQAVICATGFRPGFDIFTPWKVDNFGTVNLVDACRKQGVEKFVLVSSILVNGAA 168
Query: 179 MGQLLNPAYTVLNLFGLVLVAKLQAEKHIRSSGINYTIIRPGGLTEQPPTGNIVMEPEDT 238
MGQ+LNPAY LNLFGL LVAKLQAEK+I+ SGINYTI+RPGGL PPTGN+VMEPEDT
Sbjct: 169 MGQILNPAYLFLNLFGLTLVAKLQAEKYIKKSGINYTIVRPGGLKNDPPTGNVVMEPEDT 228
Query: 239 LYEGSISRQQVAEVAVEALLCREESSYKVVEIVTRAEAHNRPLKDLFASIK 289
LYEGSISR VAEVAVEALL +EESS+KVVEIV RAEA R KDLFAS+K
Sbjct: 229 LYEGSISRDLVAEVAVEALL-QEESSFKVVEIVARAEAPKRSYKDLFASVK 278
>AT3G18890.1 | chr3:6511169-6514729 FORWARD LENGTH=642
Length = 641
Score = 112 bits (280), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 89/252 (35%), Positives = 126/252 (50%), Gaps = 32/252 (12%)
Query: 60 VFVAGSTGRTGKRVVEKLLERGFGVVAGTTDVGRARRSLPQD----------------PN 103
VFVAG+TG+ G R V +LL+ GF V AG RA SL Q
Sbjct: 84 VFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRA-GSLVQSVKEMKLQNTDEGTQPVEK 142
Query: 104 LQLVRADVMEGTDKLVDAIRGADAVVCATGF--RRSFDPFAPWKVDNFGTVNLVEACRKA 161
L++V D +E D + A+ A ++C G + D P+++D T NLV+A A
Sbjct: 143 LEIVECD-LEKKDSIQPALGNASVIICCIGASEKEISDITGPYRIDYLATKNLVDAATSA 201
Query: 162 GVTRFILVSSILVNGAAMGQLLNPAYTVLNLFGLVLVAKLQAEKHIRSSGINYTIIRPGG 221
V FILV+S+ N PA +LNLF VL K +AE+ + SG+NY I+RPGG
Sbjct: 202 KVNNFILVTSLGTNKFGF-----PA-AILNLFWGVLCWKRKAEEALIESGLNYAIVRPGG 255
Query: 222 LTEQP-----PTGNIVMEPEDTLYEGSISRQQVAEVAVEALLCREESSYKVVEIVTRAEA 276
+ E+P T N+ + +DTL+ G +S QVAE+ + S K+VE+V A
Sbjct: 256 M-ERPTDAYKETHNLTLALDDTLFGGQVSNLQVAELLACMAKNPQLSFSKIVEVVAETTA 314
Query: 277 HNRPLKDLFASI 288
P++ L I
Sbjct: 315 PLTPIEKLLEKI 326
>AT2G37660.1 | chr2:15795481-15796977 REVERSE LENGTH=326
Length = 325
Score = 85.9 bits (211), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 83/254 (32%), Positives = 122/254 (48%), Gaps = 35/254 (13%)
Query: 60 VFVAGSTGRTGKRVVEKLLERGFGVVAGTTDVGRARRSLPQDPNLQLVRADVMEGTDKLV 119
V V G+ GRTG+ V +KL ER VA + R + S + V + T +
Sbjct: 79 VLVTGAGGRTGQIVYKKLKERSEQFVA--RGLVRTKESKEKINGEDEVFIGDIRDTASIA 136
Query: 120 DAIRGADAVVCATG----FRRSFDPFA-------------PWKVDNFGTVNLVEACRKAG 162
A+ G DA+V T + FDP P +VD G N ++A + AG
Sbjct: 137 PAVEGIDALVILTSAVPQMKPGFDPSKGGRPEFFFDDGAYPEQVDWIGQKNQIDAAKAAG 196
Query: 163 VTRFILVSSILVNGAAMGQLLNPAYTVLNLFGLVLVAKLQAEKHIRSSGINYTIIRPGGL 222
V + +LV S+ G + LN ++ N +LV K +AE+++ SGI YTIIR GGL
Sbjct: 197 VKQIVLVGSM--GGTNINHPLN---SIGN--ANILVWKRKAEQYLADSGIPYTIIRAGGL 249
Query: 223 TEQPPTGNI---VMEPEDTLYEG---SISRQQVAEVAVEALLCREESSYKVVEIVTRAEA 276
Q G I ++ +D L E +I+R VAEV V+AL EE+ +K +++ ++ E
Sbjct: 250 --QDKDGGIRELLVGKDDELLETETRTIARADVAEVCVQALQL-EEAKFKALDLASKPEG 306
Query: 277 HNRPLKDLFASIKQ 290
P KD A Q
Sbjct: 307 TGTPTKDFKALFTQ 320
>AT5G02240.1 | chr5:451502-452984 FORWARD LENGTH=254
Length = 253
Score = 77.4 bits (189), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 76/254 (29%), Positives = 123/254 (48%), Gaps = 35/254 (13%)
Query: 60 VFVAGSTGRTGKRVVEKLLERGFGVVA-GTTDVGRARRSLPQDPNLQLVRADVMEGTDKL 118
V V G++GRTG+ V +KL E VA G + + + + ++ + D+ + D +
Sbjct: 7 VLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGGEADVFI--GDITD-ADSI 63
Query: 119 VDAIRGADAVVCATG----FRRSFDPFA-------------PWKVDNFGTVNLVEACRKA 161
A +G DA+V T + FDP P +VD G N ++A + A
Sbjct: 64 NPAFQGIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVA 123
Query: 162 GVTRFILVSSILVNGAAMGQLLNPAYTVLNL-FGLVLVAKLQAEKHIRSSGINYTIIRPG 220
GV ++V S MG NP + + L G +LV K +AE+++ SG YTIIR G
Sbjct: 124 GVKHIVVVGS-------MGGT-NPDHPLNKLGNGNILVWKRKAEQYLADSGTPYTIIRAG 175
Query: 221 GLTEQP-PTGNIVMEPEDTLYE---GSISRQQVAEVAVEALLCREESSYKVVEIVTRAEA 276
GL ++ +++ +D L + ++ R VAEV ++ALL EE+ K ++ ++ E
Sbjct: 176 GLLDKEGGVRELLVGKDDELLQTDTKTVPRADVAEVCIQALLF-EEAKNKAFDLGSKPEG 234
Query: 277 HNRPLKDLFASIKQ 290
+ P KD A Q
Sbjct: 235 TSTPTKDFKALFSQ 248
>AT4G31530.2 | chr4:15282281-15284064 FORWARD LENGTH=339
Length = 338
Score = 68.2 bits (165), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 84/175 (48%), Gaps = 28/175 (16%)
Query: 103 NLQLVRADVMEGTDKLVDAIRGADAVVCATGF-----RRSFDPFAPWKVDNFGTVNLVEA 157
+LQ+V+ D D G V+C TG +R + P KVD G NL+ A
Sbjct: 121 SLQVVKGDTRNAEDLDPSMFEGVTHVICTTGTTAFPSKRWNEENTPEKVDWEGVKNLISA 180
Query: 158 CRKAGVTRFILVSSILVNGAAMGQLLNPAYTVLNLFGLVLVAKLQAEKHIRSSGINYTII 217
+ V R +LVSS+ V + +L ++++NLFG VL K E +R SG+ +TII
Sbjct: 181 L-PSSVKRVVLVSSVGVTKS--NEL---PWSIMNLFG-VLKYKKMGEDFLRDSGLPFTII 233
Query: 218 RPGGLTEQPPTGN---------------IVMEPEDTLYEGSISRQQVAEVAVEAL 257
RPG LT+ P T +V+ D L G +SR VAE ++AL
Sbjct: 234 RPGRLTDGPYTSYDLNTLLKATAGERRAVVIGQGDNLV-GEVSRLVVAEACIQAL 287
>AT4G18810.2 | chr4:10322263-10325735 REVERSE LENGTH=628
Length = 627
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 44/81 (54%), Gaps = 5/81 (6%)
Query: 185 PAYTVLNLFGLVLVAKLQAEKHIRSSGINYTIIRPGGLTEQPPTGNIVMEPEDTLYEGSI 244
PA + +L KL+ E IR SGI + I+RP LTE+P +++ E D + G +
Sbjct: 466 PAVRLNKELDFILTYKLKGEDLIRDSGIPFAIVRPCALTEEPAGADLIFEQGDNI-TGKV 524
Query: 245 SRQQVAEVAVEALLCREESSY 265
SR +VA + + AL ES Y
Sbjct: 525 SRDEVARICIAAL----ESPY 541
>AT5G18660.1 | chr5:6220872-6222125 REVERSE LENGTH=418
Length = 417
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 71/170 (41%), Gaps = 21/170 (12%)
Query: 60 VFVAGSTGRTGKRVVEKLLERGFGVVA------GTTDVGRARRSLPQDPNLQLVRADVME 113
V V GSTG G+ VV+++++RGF V+A G +L Q + +DV E
Sbjct: 86 VLVVGSTGYIGRFVVKEMIKRGFNVIAVAREKSGIRGKNDKEETLKQLQGANVCFSDVTE 145
Query: 114 GTDKLVDAIR----GADAVVCATGFRRSFDPFAPWKVDNFGTVNLVEACRKAGVTRFILV 169
D L +I G D VV R WK+D T N + A +K G F+L+
Sbjct: 146 -LDVLEKSIENLGFGVDVVVSCLASRNG-GIKDSWKIDYEATKNSLVAGKKFGAKHFVLL 203
Query: 170 SSILVNGAAMGQLLNPAYTVLNLFGLVLVAKLQAEKHIRSSGINYTIIRP 219
S+I V + L A+L + S Y+I+RP
Sbjct: 204 SAICVQKPLLE---------FQRAKLKFEAELMDLAEQQDSSFTYSIVRP 244
>AT3G46780.1 | chr3:17228766-17231021 FORWARD LENGTH=511
Length = 510
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 69/259 (26%), Positives = 116/259 (44%), Gaps = 38/259 (14%)
Query: 60 VFVAGSTGRTGKRVVEKLLERGFGVVAGTTDVGRAR---------RSLPQD--PNLQLVR 108
+FVAG+TG+ G R+ + LL+RGF V AG D+G A+ + L D L V+
Sbjct: 94 IFVAGATGQAGIRIAQTLLQRGFSVRAGVPDLGAAQDLARVAATYKILSNDEVKRLNAVQ 153
Query: 109 ADVMEGTDKLVDAIRGADAVVCATGFRRSFDPFAPWKVDNFGTVNLVEACRKAGVTRFIL 168
+ + + + AI A VV G + P A +V + +V+A AGV+
Sbjct: 154 SPFQDA-ESIAKAIGNATKVVVTVGATEN-GPDA--QVSTSDALLVVQAAELAGVSHV-- 207
Query: 169 VSSILVNGAAMGQLLNPAYTVLNLFGLVLVAKLQAE------KHIRSSGINYTIIRPGGL 222
+I+ +G G N + + FG L AK Q + + + + YT+I+ L
Sbjct: 208 --AIVYDGTISGSTYNVLDGITSFFG-NLFAKSQPLTISDLIEKVAQTDVAYTLIK-TSL 263
Query: 223 TEQ--PPTG-NIVMEPEDTLYEG--------SISRQQVAEVAVEALLCREESSYKVVEIV 271
TE P N+V+ E + + + ++A + + + KVVE+
Sbjct: 264 TEDFSPEKAYNVVVSAEGSNSGSGSSSSEAYKVPKLKIASLVADIFANTAVAENKVVEVS 323
Query: 272 TRAEAHNRPLKDLFASIKQ 290
T A +RP+ +LF+ I +
Sbjct: 324 TDPSAPSRPVDELFSVIPE 342
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.135 0.382
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,956,616
Number of extensions: 185267
Number of successful extensions: 495
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 485
Number of HSP's successfully gapped: 8
Length of query: 291
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 193
Effective length of database: 8,419,801
Effective search space: 1625021593
Effective search space used: 1625021593
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 111 (47.4 bits)