BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0338700 Os06g0338700|Os06g0338700
(594 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0338700 Copper amine oxidase family protein 1085 0.0
Os06g0338200 Copper amine oxidase family protein 800 0.0
Os07g0572100 Similar to Amine oxidase like protein (EC 1.4.... 449 e-126
Os04g0269600 Copper amine oxidase family protein 393 e-109
Os04g0136200 166 7e-41
Os04g0476100 Similar to Peroxisomal copper-containing amine... 146 4e-35
Os02g0593300 100 6e-21
>Os06g0338700 Copper amine oxidase family protein
Length = 594
Score = 1085 bits (2806), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 529/559 (94%), Positives = 529/559 (94%)
Query: 36 TELTAVRSAVLAFSLVASRPISFHYVGLDEPEKPDVLSHTNXXXXXILPRRAFVIARAGG 95
TELTAVRSAVLAFSLVASRPISFHYVGLDEPEKPDVLSHTN ILPRRAFVIARAGG
Sbjct: 36 TELTAVRSAVLAFSLVASRPISFHYVGLDEPEKPDVLSHTNAAAAAILPRRAFVIARAGG 95
Query: 96 LSHEFYVDVTNTSAPRVVSHGIHDGPGFPMFTTEEQVAAGQLSREYPPFRESLQRRGLAL 155
LSHEFYVDVTNTSAPRVVSHGIHDGPGFPMFTTEEQVAAGQLSREYPPFRESLQRRGLAL
Sbjct: 96 LSHEFYVDVTNTSAPRVVSHGIHDGPGFPMFTTEEQVAAGQLSREYPPFRESLQRRGLAL 155
Query: 156 TNVGCGVFSMGWFGKNEARRLAKVQCFIVAGGTANYYARPLEGVTLLVDVEKLVIVAYRD 215
TNVGCGVFSMGWFGKNEARRLAKVQCFIVAGGTANYYARPLEGVTLLVDVEKLVIVAYRD
Sbjct: 156 TNVGCGVFSMGWFGKNEARRLAKVQCFIVAGGTANYYARPLEGVTLLVDVEKLVIVAYRD 215
Query: 216 RAAYSVPKAEGTDYRAGKARPPFNXXXXXXXXXXQPEGKGFHIDDHIVRWANWEFHVGFD 275
RAAYSVPKAEGTDYRAGKARPPFN QPEGKGFHIDDHIVRWANWEFHVGFD
Sbjct: 216 RAAYSVPKAEGTDYRAGKARPPFNGAVPAPGVVVQPEGKGFHIDDHIVRWANWEFHVGFD 275
Query: 276 MRAGTVISMASVHDADADLWRRVLYRGFASEIFVPYMDPEEEWYFHTFMDAGEYGLGVSA 335
MRAGTVISMASVHDADADLWRRVLYRGFASEIFVPYMDPEEEWYFHTFMDAGEYGLGVSA
Sbjct: 276 MRAGTVISMASVHDADADLWRRVLYRGFASEIFVPYMDPEEEWYFHTFMDAGEYGLGVSA 335
Query: 336 VPLQPEADYPANAAYMDGYYVDADGKPVKSENIICVFERYAGDIAWRHTGVAGPIAPITE 395
VPLQPEADYPANAAYMDGYYVDADGKPVKSENIICVFERYAGDIAWRHTGVAGPIAPITE
Sbjct: 336 VPLQPEADYPANAAYMDGYYVDADGKPVKSENIICVFERYAGDIAWRHTGVAGPIAPITE 395
Query: 396 XXXXXXXXXXXXXXXGNYDYTLDWEFKTVGSIKTVVSLSGILEMKATNYTHVDQIRDDIH 455
GNYDYTLDWEFKTVGSIKTVVSLSGILEMKATNYTHVDQIRDDIH
Sbjct: 396 VRPDVTLVVRMVVTVGNYDYTLDWEFKTVGSIKTVVSLSGILEMKATNYTHVDQIRDDIH 455
Query: 456 GTLIAENTVGVYHDHFITYHLDLDIDGTKNSFIKNTIIPKRNTGVRATGGAPTPRSYWTV 515
GTLIAENTVGVYHDHFITYHLDLDIDGTKNSFIKNTIIPKRNTGVRATGGAPTPRSYWTV
Sbjct: 456 GTLIAENTVGVYHDHFITYHLDLDIDGTKNSFIKNTIIPKRNTGVRATGGAPTPRSYWTV 515
Query: 516 LYEVAETEAEGQVNINGAPADLLFVNPSKKTKVGNEVGYRLIPAGATATSLLANNDYPQR 575
LYEVAETEAEGQVNINGAPADLLFVNPSKKTKVGNEVGYRLIPAGATATSLLANNDYPQR
Sbjct: 516 LYEVAETEAEGQVNINGAPADLLFVNPSKKTKVGNEVGYRLIPAGATATSLLANNDYPQR 575
Query: 576 RASYTKKQVWVTPYNKSEK 594
RASYTKKQVWVTPYNKSEK
Sbjct: 576 RASYTKKQVWVTPYNKSEK 594
>Os06g0338200 Copper amine oxidase family protein
Length = 698
Score = 800 bits (2065), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 397/573 (69%), Positives = 450/573 (78%), Gaps = 15/573 (2%)
Query: 36 TELTAVRSAVLAFSLVASRPISFHYVGLDEPEKPDVLSHTN-------XXXXXILPRRAF 88
TE+TA+R+AVLA LV +RP+ FHYVGLDEP+KPDVLS+ LPRRAF
Sbjct: 36 TEITAIRAAVLASPLVPARPLFFHYVGLDEPDKPDVLSYAYGAADAAATSSQMTLPRRAF 95
Query: 89 VIARAGGLSHEFYVDVTNTSAPRVVSHGIHDGPGFPMFTTEEQVAAGQLSREYPPFRESL 148
VIARAGG SHEF VD+ +A V+SH +H GPGFPMFT E+Q+AA L YPPF ES+
Sbjct: 96 VIARAGGQSHEFTVDIAADNA-SVLSHAVHRGPGFPMFTDEDQIAAMALPYTYPPFVESV 154
Query: 149 QRRGLALTNVGCGVFSMGWFGKNE----ARRLAKVQCFIVA-GGTANYYARPLEGVTLLV 203
+RRGL + VGCGV S GWFG + R+AK++C +V TAN YARP+EGV ++V
Sbjct: 155 RRRGLDVGEVGCGVLSRGWFGAEQPAYGGARVAKMKCVVVDYNATANIYARPVEGVVMVV 214
Query: 204 DVEKLVIVAYRDRAAYSVPKAEGTDYRAGKARPPFNXXXXXXXXXXQPEGKGFHIDDHIV 263
D++++ I+ YRDRA ++VPKAEGTDYRA K PPF QPEG+GFH+ H+V
Sbjct: 215 DLDRMAIIGYRDRAVFTVPKAEGTDYRADKVGPPFTGPAAPPGVVMQPEGRGFHVHGHLV 274
Query: 264 RWANWEFHVGFDMRAGTVISMASVHDADAD-LWRRVLYRGFASEIFVPYMDPEEEWYFHT 322
+WANWEFHVGFDMRAGTVIS+ASV+D DA L RRVLYRGF SEIFVPYMDPEEEWYFHT
Sbjct: 275 KWANWEFHVGFDMRAGTVISLASVNDTDAGGLKRRVLYRGFVSEIFVPYMDPEEEWYFHT 334
Query: 323 FMDAGEYGLGVSAVPLQPEADYPANAAYMDGYYVDADGKPVKSENIICVFERYAGDIAWR 382
F DAGEYGLG A LQ AD PANA YMDGYY +DGKPVK+E++IC+FERYAGD+AWR
Sbjct: 335 FTDAGEYGLGALASQLQRGADCPANAVYMDGYYAGSDGKPVKAEDVICLFERYAGDVAWR 394
Query: 383 HTGVAGPIAPITEXXXXXXXXXXXXXXXGNYDYTLDWEFKTVGSIKTVVSLSGILEMKAT 442
HT G +E GNYDYTLDWEFKTVGSIK VVSLSGILEMKA
Sbjct: 395 HTNGIGLGGLFSEVRPDVTLVVRMVVTVGNYDYTLDWEFKTVGSIKIVVSLSGILEMKAI 454
Query: 443 NYTHVDQIRDDIHGTLIAENTVGVYHDHFITYHLDLDIDGTKNSFIKNTIIPKRNTGVRA 502
NYTHVDQIR+D HGTLI ENT+GVYHDHF+TYHLDLDIDGT+NSFIKN I+PK NTGVRA
Sbjct: 455 NYTHVDQIREDTHGTLITENTIGVYHDHFVTYHLDLDIDGTRNSFIKNNIVPKCNTGVRA 514
Query: 503 TGGAPTP-RSYWTVLYEVAETEAEGQVNINGAPADLLFVNPSKKTKVGNEVGYRLIPAGA 561
TGGAPTP RSYWTVLYEVAETEAEGQVNIN APADLLFVNPSKK K+GNEVGYRLIP GA
Sbjct: 515 TGGAPTPRRSYWTVLYEVAETEAEGQVNINSAPADLLFVNPSKKMKIGNEVGYRLIPTGA 574
Query: 562 TATSLLANNDYPQRRASYTKKQVWVTPYNKSEK 594
TATSLLA++DYP+RRASYTKKQVWVTPYNKSEK
Sbjct: 575 TATSLLADDDYPERRASYTKKQVWVTPYNKSEK 607
>Os07g0572100 Similar to Amine oxidase like protein (EC 1.4.3.6) (Copper amine
oxidase)
Length = 446
Score = 449 bits (1155), Expect = e-126, Method: Compositional matrix adjust.
Identities = 216/338 (63%), Positives = 256/338 (75%), Gaps = 6/338 (1%)
Query: 263 VRWANWEFHVGFDMRAGTVISMASVHDADADLW-----RRVLYRGFASEIFVPYMDPEEE 317
RWANWEFHVGFDMRAGTVIS+ASVHDADAD R+VLYRGF SEIFVPYMDP EE
Sbjct: 13 CRWANWEFHVGFDMRAGTVISLASVHDADADAGGARRRRQVLYRGFVSEIFVPYMDPVEE 72
Query: 318 WYFHTFMDAGEYGLGVSAVPLQPEADYPANAAYMDGYYVDADGKPVKSENIICVFERYAG 377
WY+ TF+DAGEYGLG+ A PLQP D PANAAY+DG+Y DG+PV++ N+ICVFERY+G
Sbjct: 73 WYYRTFLDAGEYGLGLWAFPLQPGGDCPANAAYLDGHYSGQDGRPVEARNMICVFERYSG 132
Query: 378 DIAWRHTGVAGPIAPITEXXXXXXXXXXXXXXXGNYDYTLDWEFKTVGSIKTVVSLSGIL 437
D+AWRHT P ITE GNYDY LDWEFKT GSIK VVSL+G+L
Sbjct: 133 DVAWRHTEAGFPNQLITEVRPDVSLVARMVVSAGNYDYILDWEFKTSGSIKLVVSLTGLL 192
Query: 438 EMKATNYTHVDQIRDDIHGTLIAENTVGVYHDHFITYHLDLDIDGTKNSFIKNTIIPKRN 497
E+KAT Y H D++ D HGTL+AENT+ VYHDH++TYHLDLD+DGT NSF+KN +
Sbjct: 193 EVKATAYAHADEVAQDAHGTLVAENTIAVYHDHYVTYHLDLDVDGTNNSFVKNIVTAVVR 252
Query: 498 TGVRATGGAPTPRSYWTVLYEVAETEAEGQVNI-NGAPADLLFVNPSKKTKVGNEVGYRL 556
RSYWTV EVAE EA+GQV++ GAPADL+FVNP KKT++GNEVGYR+
Sbjct: 253 DADADAAADTPRRSYWTVRREVAEREADGQVDLGGGAPADLVFVNPGKKTRMGNEVGYRV 312
Query: 557 IPAGATATSLLANNDYPQRRASYTKKQVWVTPYNKSEK 594
+P GA A S+LA++D+PQRRA+Y KKQV VTPY++SEK
Sbjct: 313 VPGGAMAASVLADDDFPQRRAAYCKKQVRVTPYSRSEK 350
>Os04g0269600 Copper amine oxidase family protein
Length = 702
Score = 393 bits (1009), Expect = e-109, Method: Compositional matrix adjust.
Identities = 232/565 (41%), Positives = 314/565 (55%), Gaps = 54/565 (9%)
Query: 37 ELTAVRSAVLAFSLVASRPISF--HYVGLDEPEKPDVLSHTNXXXXXILPRRAFVIARAG 94
E+ VR + A L AS P S H + LDEPEK V+ + PRRA + R
Sbjct: 93 EVNRVRELLRAHPLFASAPSSLFVHSLELDEPEK-SVVKSWRKGADPLPPRRAVAVVRFR 151
Query: 95 GLSHEFYVDVTNTSAPRVVSHGIHDGPGFPMFTTEEQVAAGQLSREYPPFRESLQRRGLA 154
G SH VD++ V+ G+PM +EQ + + F SL RRG+
Sbjct: 152 GESHVLGVDLSEGDG--AVTPLPVPASGYPMMNMDEQTSLCFAPFKDEAFNASLLRRGVR 209
Query: 155 LTNVGCGVFSMGWFG-KNEARRLAKVQCFIVAGGTANYYARPLEGVTLLVDVEKLVIVAY 213
++V C S+GW+G E RRL K QCF G TAN+Y RP+EG+T+LVD++ ++
Sbjct: 210 ASDVACLPISLGWYGPAEENRRLIKSQCFSTEG-TANFYMRPIEGLTVLVDMDTAEVLHV 268
Query: 214 RDRAA-YSVPKAEGTDYRAGKARPPFNXXXXXXXXXXQPEGKGFHIDDHIVRWANWEFHV 272
DR A +P A TDYR G + P + + +G H
Sbjct: 269 SDRGAGIPIPAAANTDYRHGHSAP----------TPAEAQAQGRH--------------- 303
Query: 273 GFDMRAGTVISMASVHDADADLWRRVLYRGFASEIFVPYMDPEEEWYFHTFMDAGEYGLG 332
G+ D R V+Y+G ASE+FVPYMDP E WYF T+MDAGEYG G
Sbjct: 304 GYQT------------DPATGEHRDVMYKGMASELFVPYMDPTEAWYFKTYMDAGEYGFG 351
Query: 333 VSAVPLQPEADYPANAAYMDGYYVDADGKPVKSENIICVFERYAGDIAWRHTGVAGPIAP 392
+ A+PL P D P +A Y+D +V ADG+P EN+ICVFERYAGDIAWRH+
Sbjct: 352 LQAMPLVPLNDCPRHARYLDAVFVAADGRPYVRENMICVFERYAGDIAWRHSESPITGMD 411
Query: 393 ITEXXXXXXXXXXXXXXXGNYDYTLDWEFKTVGSIKTVVSLSGILEMKATNYTHVDQI-- 450
I E NYDY +DWEF+ G ++ V LSGIL +K T Y+H++Q+
Sbjct: 412 IRESRPKVTLVARMAASVANYDYIVDWEFQMDGLVRIKVGLSGILMVKGTQYSHMNQVHQ 471
Query: 451 RDDIHGTLIAENTVGVYHDHFITYHLDLDIDGTKNSFIKNTIIPKRNTGVRATGGAPTPR 510
D+++GTL++EN +GV HDHF+T+ LD+DIDG NSF+K + ++NTG G +P +
Sbjct: 472 NDNMYGTLLSENVIGVIHDHFVTFRLDMDIDGADNSFVK-VAMARQNTGA---GESPR-K 526
Query: 511 SYWTVLYEVAETEAEGQVNING-APADLLFVNPSKKTKVGNEVGYRLIPAGATATSLLAN 569
SY VA TE + QV + P++ VNP KKT+VGN VGY+++PAG TA SLL
Sbjct: 527 SYLKATRHVARTEKDAQVRLKLYEPSEFHIVNPMKKTRVGNPVGYKVVPAG-TAASLLDP 585
Query: 570 NDYPQRRASYTKKQVWVTPYNKSEK 594
D PQ+R ++T Q+WVTPYNK+E+
Sbjct: 586 EDPPQKRGAFTNNQIWVTPYNKTEE 610
>Os04g0136200
Length = 819
Score = 166 bits (419), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 131/483 (27%), Positives = 207/483 (42%), Gaps = 31/483 (6%)
Query: 124 PMFTTEEQVAAGQLSREYPPFRESLQRRGLA-LTNVGCGVFSMGWFGKNEA--RRLAKVQ 180
P E V + +PPF E++++RG+ + V + G++ +A RR+AK
Sbjct: 237 PAMDAMEFVECEATVKSHPPFIEAMRKRGIDDMDLVTVDPWCAGYYSDADAPSRRIAKPL 296
Query: 181 CFIVAGG---TANYYARPLEGVTLLVDVEKLVIVAYRDRAAYSVPKAEGT-DYRAGKARP 236
F N YARP+EGV ++VD++ ++ + DR +P ++ +Y +G+ R
Sbjct: 297 VFCRTESDNPIENGYARPVEGVHIIVDMQNNTVIEFEDRKLVPLPPSDHLRNYTSGETRG 356
Query: 237 PFNXXXXXXXXXXQPEGKGFHIDDHIVRWANWEFHVGFDMRAGTVISMASVHDADADLWR 296
+ QP+G FH++ ++V W W F +GF + G V+ SV D + R
Sbjct: 357 GVDRTDVKPLVINQPQGPSFHVNGYLVEWQKWNFRIGFTPKEGLVLH--SVAYVDGNRGR 414
Query: 297 R-VLYRGFASEIFVPYMDPEEEWYFHTFMDAGEYGLGVSAVPLQPEADYPANAAYMDGYY 355
R + +R E+ VPY DP E Y DAGE GLG +A L+ D Y D ++
Sbjct: 415 RPIAHRLSFVEMVVPYGDPNEPHYRKNAFDAGEDGLGKNANSLKKGCDCLGVIKYFDAHF 474
Query: 356 VDADGKPVKSENIICVFERYAGDIAWRH----TGVAGPIAPITEXXXXXXXXXXXXXXXG 411
+ G EN +C+ E G I W+H TG+A E
Sbjct: 475 TNFTGGVETIENAVCLHEEDHG-ILWKHRDWRTGLA-------EVRRSRRLTVSFICTIA 526
Query: 412 NYDYTLDWEFKTVGSIKTVVSLSGILEMKATNYTHVDQIRDDIHGTLIAENTVGVYHDHF 471
NY+Y W F G I+ V L+GIL + A + +GT IA + H HF
Sbjct: 527 NYEYGFYWHFYQDGKIEAEVKLTGILSVGALMPGEQRK-----YGTTIAPSLYAPVHQHF 581
Query: 472 ITYHLDLDIDGTKNSFIKNTIIPKRNTGVRATGGAPTPRSYWTVLYEVAETEAEGQVNIN 531
+D+ +D N + + N G + + ++ ++E + + +
Sbjct: 582 FVTRMDMAVDCKPNEAYNQVV--EVNVNTECAGPNNMHNNAFYAEEKLLKSELQAMRDCH 639
Query: 532 GAPADLLFV-NPSKKTKVGNEVGYRLIPAGATATSLLANNDYPQRRASYTKKQVWVTPYN 590
+ A V N + G GY+LIP G+ L RRA + K +WVT Y
Sbjct: 640 PSSARYWIVRNTRTVNRTGQPTGYKLIP-GSNCLPLALPEAKFLRRAGFLKHNLWVTSYK 698
Query: 591 KSE 593
E
Sbjct: 699 NDE 701
>Os04g0476100 Similar to Peroxisomal copper-containing amine oxidase
Length = 518
Score = 146 bits (369), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 121/430 (28%), Positives = 173/430 (40%), Gaps = 26/430 (6%)
Query: 173 ARRLAKVQCFIVAGGTA---NYYARPLEGVTLLVDVEKLVIVAYRDRAAYSVPKAEGT-D 228
+RRL K F + N YARP+EG+ ++VD++ V++ + DR +P + +
Sbjct: 4 SRRLGKPLIFCRTDSDSPMENGYARPVEGIHVIVDMQNNVVIEFEDRKLVPLPPPDHLRN 63
Query: 229 YRAGKARPPFNXXXXXXXXXXQPEGKGFHIDDHIVRWANWEFHVGFDMRAGTVISMASVH 288
Y G+ R + QPEG F I+ + V W W F +GF + G VI SV
Sbjct: 64 YTPGETRGGVDRSDLKPLIINQPEGPSFRINGYFVEWQKWNFRIGFTPKEGLVIY--SVA 121
Query: 289 DADADLWRR-VLYRGFASEIFVPYMDPEEEWYFHTFMDAGEYGLGVSAVPLQPEADYPAN 347
D RR + +R E+ VPY DP E Y DAGE GLG +A L+ D
Sbjct: 122 YVDGSRGRRPIAHRLSFVEMVVPYGDPNEPHYRKNAFDAGEDGLGKNAHSLKRGCDCLGF 181
Query: 348 AAYMDGYYVDADGKPVKSENIICVFERYAGDIAWRH----TGVAGPIAPITEXXXXXXXX 403
Y D ++ + G EN +C+ E G I W+H TG+A E
Sbjct: 182 IKYFDAHFTNFTGGVETIENCVCLHEEDHG-ILWKHQDWRTGLA-------EVRRSRRLT 233
Query: 404 XXXXXXXGNYDYTLDWEFKTVGSIKTVVSLSGILEMKATNYTHVDQIRDDIHGTLIAENT 463
NY+Y W F G I+ V L+GIL + A + +GT IA
Sbjct: 234 VSFICTVANYEYGFYWHFYQDGKIEAEVKLTGILSLGALMPGESRK-----YGTTIAPGL 288
Query: 464 VGVYHDHFITYHLDLDIDGTKNSFIKNTIIPKRNTGVRATGGAPTPRSYWTVLYEVAETE 523
H HF +D+ +D N + T Y +E +
Sbjct: 289 YAPVHQHFFVARMDMAVDCKPNEAHNQVVEVNVKVENAGTHNVHNNAFYAEEKLLKSELQ 348
Query: 524 AEGQVNINGAPADLLFVNPSKKTKVGNEVGYRLIPAGATATSLLANNDYPQRRASYTKKQ 583
A + + A + N + G GYRL+P G+ L RRA + K
Sbjct: 349 AMRDCDPSSA-RHWIVRNTRAVNRTGQPTGYRLVP-GSNCLPLALPEAKFLRRAGFLKHN 406
Query: 584 VWVTPYNKSE 593
+WVT Y E
Sbjct: 407 LWVTQYKSDE 416
>Os02g0593300
Length = 450
Score = 99.8 bits (247), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 65/209 (31%), Positives = 105/209 (50%), Gaps = 10/209 (4%)
Query: 139 REYPPFRESLQRRGLA-LTNVGCGVFSMGWFGKNEA--RRLAKVQCFIVAGGTA---NYY 192
+ +PPF E++++RG+ + V + G++ +A RR+AK F + N Y
Sbjct: 163 KSHPPFIEAMKKRGVDDMDLVMVDPWCAGYYSDADAPNRRIAKPLIFCRTESDSPMENGY 222
Query: 193 ARPLEGVTLLVDVEKLVIVAYRDRAAYSVPKAEGT-DYRAGKARPPFNXXXXXXXXXXQP 251
ARP+EG+ +++DV+ ++ + DR +P + +Y G+ R + QP
Sbjct: 223 ARPVEGIHIVIDVQNNTVIEFEDRKFVPLPPPDHLRNYTPGETRGGVDRSDLKTLIINQP 282
Query: 252 EGKGFHIDDHIVRWANWEFHVGFDMRAGTVISMASVHDADADLWRR-VLYRGFASEIFVP 310
+G F ++ + V W W F +GF + G VI SV D + RR + +R E+ VP
Sbjct: 283 DGPSFRVNGYFVEWQKWNFRIGFTPKEGLVIH--SVAYVDGNRGRRPIAHRLSFVEMVVP 340
Query: 311 YMDPEEEWYFHTFMDAGEYGLGVSAVPLQ 339
Y DP E Y DAGE GLG +A L+
Sbjct: 341 YGDPNEPHYRKNAFDAGEDGLGKNAHSLK 369
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.136 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 19,843,295
Number of extensions: 852358
Number of successful extensions: 1366
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 1336
Number of HSP's successfully gapped: 8
Length of query: 594
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 488
Effective length of database: 11,501,117
Effective search space: 5612545096
Effective search space used: 5612545096
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 159 (65.9 bits)