BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0311600 Os06g0311600|J090029E12
(119 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0311600 Conserved hypothetical protein 247 1e-66
Os01g0746700 Glycoside hydrolase, family 5 protein 99 6e-22
Os05g0319100 83 4e-17
Os01g0663300 Similar to (1-4)-beta-mannan endohydrolase-lik... 82 7e-17
Os12g0117250 Glycoside hydrolase, family 5 protein 82 1e-16
Os02g0766900 Similar to (1-4)-beta-mannan endohydrolase pre... 79 1e-15
Os03g0828500 Similar to (1-4)-beta-mannan endohydrolase pre... 72 1e-13
>Os06g0311600 Conserved hypothetical protein
Length = 119
Score = 247 bits (630), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 119/119 (100%), Positives = 119/119 (100%)
Query: 1 QAWIAEMAAYVKSLDTNHLVTVGTEGFYGPGIAERLGVNPGEWAASLCSDFIQNSAVEHI 60
QAWIAEMAAYVKSLDTNHLVTVGTEGFYGPGIAERLGVNPGEWAASLCSDFIQNSAVEHI
Sbjct: 1 QAWIAEMAAYVKSLDTNHLVTVGTEGFYGPGIAERLGVNPGEWAASLCSDFIQNSAVEHI 60
Query: 61 DFASVHAYPDSWYVFLSRSFPGTYHAVIVMFIVFLLLSGYQGQAWKKKSDIFPIGLIHT 119
DFASVHAYPDSWYVFLSRSFPGTYHAVIVMFIVFLLLSGYQGQAWKKKSDIFPIGLIHT
Sbjct: 61 DFASVHAYPDSWYVFLSRSFPGTYHAVIVMFIVFLLLSGYQGQAWKKKSDIFPIGLIHT 119
>Os01g0746700 Glycoside hydrolase, family 5 protein
Length = 445
Score = 99.0 bits (245), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 45/74 (60%), Positives = 58/74 (78%), Gaps = 2/74 (2%)
Query: 1 QAWIAEMAAYVKSLDTNHLVTVGTEGFYGPGIA-ERLGVNPGEW-AASLCSDFIQNSAVE 58
Q W+ EM+AYVKS+D HL+TVGTEGFYGP + E+L +NPGEW + +DFI+NS ++
Sbjct: 240 QRWMEEMSAYVKSIDKKHLLTVGTEGFYGPTSSQEKLNINPGEWFPNNYGADFIRNSKIQ 299
Query: 59 HIDFASVHAYPDSW 72
IDFASVH YPD+W
Sbjct: 300 DIDFASVHVYPDNW 313
>Os05g0319100
Length = 491
Score = 83.2 bits (204), Expect = 4e-17, Method: Composition-based stats.
Identities = 42/73 (57%), Positives = 50/73 (68%), Gaps = 1/73 (1%)
Query: 1 QAWIAEMAAYVKSLDTNHLVTVGTEGFYGPGI-AERLGVNPGEWAASLCSDFIQNSAVEH 59
QAWIAEMA +VKS+D HL+ VG EGFYGP RL VNP A +DF++N V
Sbjct: 262 QAWIAEMAFHVKSVDPAHLLGVGAEGFYGPSSPPARLRVNPNADVALAGADFVRNHRVLG 321
Query: 60 IDFASVHAYPDSW 72
+DFASVH YPD+W
Sbjct: 322 VDFASVHVYPDTW 334
>Os01g0663300 Similar to (1-4)-beta-mannan endohydrolase-like protein
Length = 403
Score = 82.4 bits (202), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 40/73 (54%), Positives = 51/73 (69%), Gaps = 3/73 (4%)
Query: 1 QAWIAEMAAYVKSLDTNHLVTVGTEGFYGPGIAERL-GVNPGEWAASLCSDFIQNSAVEH 59
Q+WI EMAA+VKS+D NH++ VG EGFYG R+ VNP + L +DFI N+ V
Sbjct: 223 QSWITEMAAHVKSIDRNHMLEVGLEGFYGASSPSRIAAVNPSGY--QLGTDFIANNQVPG 280
Query: 60 IDFASVHAYPDSW 72
IDFA+VH+YPD W
Sbjct: 281 IDFATVHSYPDQW 293
>Os12g0117250 Glycoside hydrolase, family 5 protein
Length = 360
Score = 81.6 bits (200), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 48/72 (66%)
Query: 1 QAWIAEMAAYVKSLDTNHLVTVGTEGFYGPGIAERLGVNPGEWAASLCSDFIQNSAVEHI 60
QAWI EMA+YVKS+D HL+ +G EGFYG E L VNP E++ +DFI+N I
Sbjct: 196 QAWIEEMASYVKSIDPVHLLEIGIEGFYGLSTPELLPVNPDEYSGHAGTDFIRNHQAPGI 255
Query: 61 DFASVHAYPDSW 72
D AS+H Y D+W
Sbjct: 256 DLASIHVYSDTW 267
>Os02g0766900 Similar to (1-4)-beta-mannan endohydrolase precursor (EC 3.2.1.78)
Length = 407
Score = 78.6 bits (192), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 50/72 (69%), Gaps = 5/72 (6%)
Query: 1 QAWIAEMAAYVKSLDTNHLVTVGTEGFYGPGIAERLGVNPGEWAASLCSDFIQNSAVEHI 60
QAW+ EMA YVKS+D NH+V +G EGFYG + + NPG ++ +DFI N+ V +
Sbjct: 222 QAWVTEMAGYVKSVDPNHMVEIGLEGFYGESMHKNF--NPGY---TVGTDFIANNLVPAV 276
Query: 61 DFASVHAYPDSW 72
DFA++H+YPD W
Sbjct: 277 DFATIHSYPDQW 288
>Os03g0828500 Similar to (1-4)-beta-mannan endohydrolase precursor (EC 3.2.1.78)
Length = 461
Score = 71.6 bits (174), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 44/72 (61%), Gaps = 2/72 (2%)
Query: 1 QAWIAEMAAYVKSLDTNHLVTVGTEGFYGPGIAERLGVNPGEWAASLCSDFIQNSAVEHI 60
QAW+ EMA YVKS+D HLVT G EGFYG G E +NP W ++++ +
Sbjct: 209 QAWVEEMAPYVKSVDGRHLVTPGLEGFYGAGEHESKELNP--WGIYYGTNYVATHRTAAV 266
Query: 61 DFASVHAYPDSW 72
DFA++H YPD W
Sbjct: 267 DFATIHLYPDVW 278
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.323 0.138 0.444
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,286,533
Number of extensions: 151185
Number of successful extensions: 284
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 278
Number of HSP's successfully gapped: 7
Length of query: 119
Length of database: 17,035,801
Length adjustment: 85
Effective length of query: 34
Effective length of database: 12,597,611
Effective search space: 428318774
Effective search space used: 428318774
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 149 (62.0 bits)