Os06g0311600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os06g0311600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 22.43 | 0.223 | 9.53 | 1.1 | 0.225 | -0.369 | -0.0819 | 0.74 | 0.416 | 18.3 | 1003 | 10 | -- | -- |
| 23.21 | 0.226 | 9.53 | 1.11 | 0.224 | -0.379 | -0.131 | -- | 0.412 | 18.4 | 1003 | 10 | -- | -- |
| 22.42 | 0.222 | 9.53 | 1.1 | 0.225 | -0.373 | -- | 0.755 | 0.416 | 18.3 | 1003 | 10 | -- | -- |
| 23.23 | 0.226 | 9.53 | 1.11 | 0.223 | -0.382 | -- | -- | 0.411 | 18.4 | 1004 | 10 | -- | -- |
| 25.02 | 0.234 | 9.53 | 1.09 | -- | -0.419 | -- | 0.736 | 0.419 | -- | 1003 | 10 | -- | -- |
| 25.4 | 0.236 | 9.54 | 1.12 | 0.247 | -- | -0.117 | -- | 0.343 | 18.5 | -- | -- | -- | -- |
| 25.44 | 0.236 | 9.54 | 1.12 | 0.246 | -- | -- | -- | 0.343 | 18.4 | -- | -- | -- | -- |
| 25.77 | 0.237 | 9.52 | 1.11 | -- | -0.431 | -- | -- | 0.415 | -- | 1004 | 10 | -- | -- |
| 55.82 | 0.35 | 9.55 | -- | 0.205 | -0.433 | -- | -- | 0.295 | 18.7 | 1004 | 40 | -- | -- |
| 28.59 | 0.25 | 9.54 | 1.12 | -- | -- | -- | -- | 0.337 | -- | -- | -- | -- | -- |
| 58.62 | 0.358 | 9.57 | -- | 0.232 | -- | -- | -- | 0.218 | 18.7 | -- | -- | -- | -- |
| 57.9 | 0.354 | 9.55 | -- | -- | -0.477 | -- | -- | 0.297 | -- | 1005 | 130 | -- | -- |
| 61.43 | 0.366 | 9.57 | -- | -- | -- | -- | -- | 0.214 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 20.79 | atmosphere | 1005 | 270 | > th | dose dependent | rect. | 23 | 10 |
| 3 | 21.22 | atmosphere | 1005 | 270 | > th | dose dependent | rect. | 1 | 8 |
| 5 | 21.29 | atmosphere | 1005 | 30 | > th | dose dependent | sin | 6 | NA |
| 17 | 21.50 | atmosphere | 1010 | 30 | < th | dose dependent | rect. | 24 | 17 |
| 37 | 21.68 | atmosphere | 1015 | 270 | < th | dose dependent | rect. | 22 | 16 |
| 66 | 21.87 | atmosphere | 1005 | 10 | > th | dose dependent | rect. | 23 | 13 |
| 79 | 21.92 | atmosphere | 1010 | 30 | < th | dose dependent | sin | 5 | NA |
| 121 | 22.04 | atmosphere | 1005 | 30 | > th | dose dependent | rect. | 23 | 21 |
| 139 | 22.09 | atmosphere | 1010 | 270 | < th | dose dependent | rect. | 23 | 10 |
| 145 | 22.09 | atmosphere | 1005 | 30 | > th | dose dependent | rect. | 23 | 23 |
| 160 | 22.13 | atmosphere | 1005 | 720 | > th | dose dependent | rect. | 21 | 5 |
| 163 | 22.13 | atmosphere | 1005 | 10 | > th | dose dependent | rect. | 4 | 8 |
| 178 | 22.16 | atmosphere | 1005 | 720 | > th | dose dependent | rect. | 23 | 2 |
| 202 | 22.20 | atmosphere | 1005 | 30 | > th | dose dependent | rect. | 23 | 19 |
| 301 | 22.34 | atmosphere | 1010 | 270 | < th | dose independent | rect. | 20 | 19 |
| 314 | 22.36 | atmosphere | 1010 | 10 | < th | dose dependent | rect. | 24 | 10 |
| 324 | 22.37 | atmosphere | 1005 | 270 | > th | dose dependent | rect. | 15 | 19 |
| 347 | 22.39 | atmosphere | 1000 | 30 | > th | dose dependent | rect. | 4 | 20 |
| 373 | 22.43 | atmosphere | 1010 | 720 | < th | dose dependent | rect. | 20 | 10 |
| 387 | 22.44 | atmosphere | 1005 | 30 | > th | dose dependent | rect. | 4 | 16 |
| 390 | 22.44 | atmosphere | 1005 | 10 | > th | dose dependent | rect. | 17 | 19 |
| 394 | 22.45 | atmosphere | 1005 | 720 | > th | dose dependent | sin | 12 | NA |
| 403 | 22.46 | atmosphere | 1005 | 90 | > th | dose independent | rect. | 4 | 8 |
| 404 | 22.46 | atmosphere | 1005 | 90 | < th | dose independent | rect. | 24 | 16 |
| 407 | 22.46 | atmosphere | 1010 | 720 | < th | dose dependent | rect. | 21 | 7 |
| 413 | 22.46 | atmosphere | 1005 | 10 | > th | dose dependent | rect. | 21 | 15 |
| 435 | 22.47 | atmosphere | 1000 | 10 | > th | dose dependent | rect. | 4 | 23 |
| 465 | 22.50 | atmosphere | 1005 | 270 | > th | dose independent | rect. | 4 | 5 |
| 482 | 22.51 | atmosphere | 1010 | 720 | < th | dose independent | rect. | 20 | 3 |
| 529 | 22.53 | atmosphere | 1005 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 564 | 22.56 | atmosphere | 1005 | 30 | > th | dose dependent | rect. | 4 | 14 |
| 573 | 22.56 | atmosphere | 1005 | 10 | > th | dose dependent | rect. | 2 | 22 |
| 586 | 22.57 | atmosphere | 1005 | 10 | > th | dose dependent | rect. | 19 | 17 |
| 626 | 22.60 | atmosphere | 1010 | 720 | < th | dose independent | rect. | 22 | 1 |
| 628 | 22.60 | atmosphere | 1010 | 270 | < th | dose independent | rect. | 11 | 15 |
| 631 | 22.60 | atmosphere | 1010 | 270 | < th | dose independent | rect. | 9 | 19 |
| 652 | 22.61 | atmosphere | 1005 | 720 | > th | dose independent | rect. | 21 | 7 |
| 661 | 22.61 | temperature | 15 | 10 | > th | dose dependent | rect. | 12 | 16 |
| 674 | 22.62 | atmosphere | 1010 | 270 | < th | dose independent | rect. | 20 | 8 |
| 690 | 22.62 | atmosphere | 1015 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 696 | 22.63 | atmosphere | 1010 | 720 | < th | dose dependent | rect. | 23 | 2 |
| 860 | 22.70 | atmosphere | 1015 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 863 | 22.71 | atmosphere | 1005 | 10 | > th | dose dependent | no | NA | NA |
| 969 | 22.75 | atmosphere | 1005 | 10 | > th | dose dependent | rect. | 19 | 23 |