BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0311600 Os06g0311600|J090029E12
(119 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G20680.1 | chr2:8921024-8923066 FORWARD LENGTH=434 100 3e-22
AT4G28320.1 | chr4:14018293-14019972 REVERSE LENGTH=432 98 8e-22
AT5G01930.1 | chr5:361189-362867 REVERSE LENGTH=449 95 9e-21
AT1G02310.1 | chr1:458243-460652 REVERSE LENGTH=412 87 2e-18
AT5G66460.1 | chr5:26538911-26540837 REVERSE LENGTH=432 80 2e-16
AT3G10890.1 | chr3:3407455-3409000 REVERSE LENGTH=415 75 5e-15
AT3G30540.1 | chr3:12144792-12146475 REVERSE LENGTH=330 70 2e-13
AT3G10900.1 | chr3:3410252-3412070 REVERSE LENGTH=409 69 4e-13
>AT2G20680.1 | chr2:8921024-8923066 FORWARD LENGTH=434
Length = 433
Score = 99.8 bits (247), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 43/73 (58%), Positives = 54/73 (73%)
Query: 1 QAWIAEMAAYVKSLDTNHLVTVGTEGFYGPGIAERLGVNPGEWAASLCSDFIQNSAVEHI 60
Q WI EM A++KS+D HL+TVG EGFYGP ++L VNP WA+ L SDF++NS +I
Sbjct: 228 QDWINEMTAFIKSIDNKHLLTVGLEGFYGPSSPKKLTVNPERWASELGSDFVRNSDSPNI 287
Query: 61 DFASVHAYPDSWY 73
DFASVH YPD W+
Sbjct: 288 DFASVHIYPDHWF 300
>AT4G28320.1 | chr4:14018293-14019972 REVERSE LENGTH=432
Length = 431
Score = 98.2 bits (243), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 42/73 (57%), Positives = 53/73 (72%)
Query: 1 QAWIAEMAAYVKSLDTNHLVTVGTEGFYGPGIAERLGVNPGEWAASLCSDFIQNSAVEHI 60
Q WI EM ++KS+D HL+TVG EGFYGP + L VNP +WA+ L +DF+QNS +I
Sbjct: 227 QDWIDEMTGFIKSIDDKHLLTVGLEGFYGPNSPKGLTVNPEQWASQLGTDFVQNSNSSNI 286
Query: 61 DFASVHAYPDSWY 73
DFASVH YPD W+
Sbjct: 287 DFASVHIYPDHWF 299
>AT5G01930.1 | chr5:361189-362867 REVERSE LENGTH=449
Length = 448
Score = 94.7 bits (234), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 43/72 (59%), Positives = 51/72 (70%)
Query: 1 QAWIAEMAAYVKSLDTNHLVTVGTEGFYGPGIAERLGVNPGEWAASLCSDFIQNSAVEHI 60
Q+WI EMA +VKSLD HLV +G EGFYGP R NP +AA + +DFI+N+ V I
Sbjct: 232 QSWIQEMAVFVKSLDAKHLVEIGLEGFYGPSAPARTRFNPNPYAAQVGTDFIRNNQVLGI 291
Query: 61 DFASVHAYPDSW 72
DFASVH YPDSW
Sbjct: 292 DFASVHVYPDSW 303
>AT1G02310.1 | chr1:458243-460652 REVERSE LENGTH=412
Length = 411
Score = 87.4 bits (215), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 39/72 (54%), Positives = 51/72 (70%), Gaps = 1/72 (1%)
Query: 1 QAWIAEMAAYVKSLDTNHLVTVGTEGFYGPGIAERLGVNPGEWAASLCSDFIQNSAVEHI 60
Q W+ EMA+YVKS+D+NHL+ +G EGFYG I ER NPG + +DFI N+ + I
Sbjct: 211 QDWVKEMASYVKSIDSNHLLEIGLEGFYGESIPERTVYNPGGRVLT-GTDFITNNQIPDI 269
Query: 61 DFASVHAYPDSW 72
DFA++H YPDSW
Sbjct: 270 DFATIHIYPDSW 281
>AT5G66460.1 | chr5:26538911-26540837 REVERSE LENGTH=432
Length = 431
Score = 80.5 bits (197), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 37/73 (50%), Positives = 47/73 (64%), Gaps = 3/73 (4%)
Query: 1 QAWIAEMAAYVKSLDTNHLVTVGTEGFYGPGIAERLGVNPGEWAASLCSDFIQNSAVEHI 60
QAWI EMAA+VKSLD NHL+ G EGFYG + +NP +DFI N+ + I
Sbjct: 216 QAWITEMAAHVKSLDRNHLLEAGLEGFYGQSSPQSKTLNP---PGQFGTDFIANNRIPGI 272
Query: 61 DFASVHAYPDSWY 73
DF +VH+YPD W+
Sbjct: 273 DFVTVHSYPDEWF 285
>AT3G10890.1 | chr3:3407455-3409000 REVERSE LENGTH=415
Length = 414
Score = 75.5 bits (184), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 38/79 (48%), Positives = 51/79 (64%), Gaps = 2/79 (2%)
Query: 2 AWIAEMAAYVKSLDTNHLVTVGTEGFYGPGIAER-LGVNPGEWAASLCSDFIQNSAVEHI 60
AW+ EMA YVKS+D+ HL++ G EGFYG +R +NP A L +DFI N ++ I
Sbjct: 217 AWMNEMALYVKSVDSKHLLSTGLEGFYGDSSPQRKTSLNPVA-ANVLGTDFIANHKLDAI 275
Query: 61 DFASVHAYPDSWYVFLSRS 79
DFAS+H+YPD W+ L
Sbjct: 276 DFASIHSYPDLWFPNLDEK 294
>AT3G30540.1 | chr3:12144792-12146475 REVERSE LENGTH=330
Length = 329
Score = 70.5 bits (171), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 51/79 (64%), Gaps = 2/79 (2%)
Query: 2 AWIAEMAAYVKSLDTNHLVTVGTEGFYGPGIAERLG-VNPGEWAASLCSDFIQNSAVEHI 60
AWI EMA +VKS+D NHL++ G EGFYG ER +NP A ++ +DFI N ++ I
Sbjct: 178 AWINEMALFVKSVDPNHLLSTGHEGFYGDSSPERKNSLNPVS-ANTVGADFIANHNIDAI 236
Query: 61 DFASVHAYPDSWYVFLSRS 79
DFAS+H D W+ L ++
Sbjct: 237 DFASMHCGSDLWFQRLDQN 255
>AT3G10900.1 | chr3:3410252-3412070 REVERSE LENGTH=409
Length = 408
Score = 69.3 bits (168), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 50/78 (64%), Gaps = 2/78 (2%)
Query: 3 WIAEMAAYVKSLDTNHLVTVGTEGFYGPGIAERLG-VNPGEWAASLCSDFIQNSAVEHID 61
WI EMA +VKS+D NHL++ G EGFYG ER +NP A ++ +DFI N ++ ID
Sbjct: 217 WINEMAPFVKSVDPNHLLSTGHEGFYGDSSPERKNSLNPVS-ANTVGADFIANHNIDAID 275
Query: 62 FASVHAYPDSWYVFLSRS 79
FAS+H D W+ L ++
Sbjct: 276 FASMHCGSDLWFQRLDQN 293
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.323 0.138 0.444
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,790,021
Number of extensions: 101420
Number of successful extensions: 175
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 170
Number of HSP's successfully gapped: 8
Length of query: 119
Length of database: 11,106,569
Length adjustment: 85
Effective length of query: 34
Effective length of database: 8,776,209
Effective search space: 298391106
Effective search space used: 298391106
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 105 (45.1 bits)