BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0304500 Os06g0304500|AK119441
(348 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0304500 CRS1/YhbY domain containing protein 560 e-160
Os01g0958400 CRS1/YhbY domain containing protein 228 5e-60
Os04g0492900 CRS1/YhbY domain containing protein 172 2e-43
Os09g0363100 CRS1/YhbY domain containing protein 84 2e-16
Os04g0464800 CRS1/YhbY domain containing protein 83 4e-16
Os05g0145300 CRS1/YhbY domain containing protein 74 2e-13
Os08g0360100 CRS1/YhbY domain containing protein 68 1e-11
>Os06g0304500 CRS1/YhbY domain containing protein
Length = 348
Score = 560 bits (1442), Expect = e-160, Method: Compositional matrix adjust.
Identities = 278/326 (85%), Positives = 278/326 (85%)
Query: 23 VHPSGSWMXXXXXXXXXXXXXXXXLFEPPRVVSERWMDGRGWWFRFRQPVRHGSTAVTLD 82
VHPSGSWM LFEPPRVVSERWMDGRGWWFRFRQPVRHGSTAVTLD
Sbjct: 23 VHPSGSWMRPRGAGSSPRPPGASPLFEPPRVVSERWMDGRGWWFRFRQPVRHGSTAVTLD 82
Query: 83 TGGGFARFSVGGDAGTKQGXXXXXXXXXXXXXXXXXXXXXVNQLKWYRLKAKKKMKSPNP 142
TGGGFARFSVGGDAGTKQG VNQLKWYRLKAKKKMKSPNP
Sbjct: 83 TGGGFARFSVGGDAGTKQGAGRKGQPPAKAAKKKMSRKAKVNQLKWYRLKAKKKMKSPNP 142
Query: 143 EVRIRYKLEKAKRKEEWLIEKLRKYEVPRSPEPVHDPEILTEEEKFYLKRTGEKKKNYVP 202
EVRIRYKLEKAKRKEEWLIEKLRKYEVPRSPEPVHDPEILTEEEKFYLKRTGEKKKNYVP
Sbjct: 143 EVRIRYKLEKAKRKEEWLIEKLRKYEVPRSPEPVHDPEILTEEEKFYLKRTGEKKKNYVP 202
Query: 203 XXXXXXXXXXXLNMHLHWKKHETVKVICKPCRPGQVYEYAEELTRLSKGTVIDIKPNNTI 262
LNMHLHWKKHETVKVICKPCRPGQVYEYAEELTRLSKGTVIDIKPNNTI
Sbjct: 203 VGRRGVFGGVVLNMHLHWKKHETVKVICKPCRPGQVYEYAEELTRLSKGTVIDIKPNNTI 262
Query: 263 IFYRGKNYVQPKVMSPPDTLSKQKALEKYRYEQSLEHTSQFIEKLEKELEDYQKHVALFK 322
IFYRGKNYVQPKVMSPPDTLSKQKALEKYRYEQSLEHTSQFIEKLEKELEDYQKHVALFK
Sbjct: 263 IFYRGKNYVQPKVMSPPDTLSKQKALEKYRYEQSLEHTSQFIEKLEKELEDYQKHVALFK 322
Query: 323 NRGETLETISSEETNVDDLTSSSDTE 348
NRGETLETISSEETNVDDLTSSSDTE
Sbjct: 323 NRGETLETISSEETNVDDLTSSSDTE 348
>Os01g0958400 CRS1/YhbY domain containing protein
Length = 415
Score = 228 bits (581), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 117/201 (58%), Positives = 143/201 (71%), Gaps = 1/201 (0%)
Query: 124 NQLKWYRLKAKK-KMKSPNPEVRIRYKLEKAKRKEEWLIEKLRKYEVPRSPEPVHDPEIL 182
N + R K KK K K P PE R++YK+EKAK KE L+EKL+KYE+ ++ P+ + L
Sbjct: 113 NDPRRIRPKGKKIKQKFPTPEARLKYKIEKAKLKEAMLVEKLKKYEIAKAQGPMAKQDDL 172
Query: 183 TEEEKFYLKRTGEKKKNYVPXXXXXXXXXXXLNMHLHWKKHETVKVICKPCRPGQVYEYA 242
EE+FYLK+ +KK NYVP LNMHLHWKKHETVKVICKPC+PGQ+ EYA
Sbjct: 173 DGEERFYLKKVSQKKSNYVPVGRRGVFGGVILNMHLHWKKHETVKVICKPCKPGQIQEYA 232
Query: 243 EELTRLSKGTVIDIKPNNTIIFYRGKNYVQPKVMSPPDTLSKQKALEKYRYEQSLEHTSQ 302
E+ RLS G I+ N+TI+FYRGKNYVQP VMSP DTLSK+KALEK +YEQSLE +
Sbjct: 233 SEIARLSGGIPINTIGNDTIVFYRGKNYVQPDVMSPVDTLSKKKALEKSKYEQSLETVRR 292
Query: 303 FIEKLEKELEDYQKHVALFKN 323
FI EKELE Y +H+AL+ N
Sbjct: 293 FIAVSEKELELYYRHIALYGN 313
>Os04g0492900 CRS1/YhbY domain containing protein
Length = 479
Score = 172 bits (437), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 102/230 (44%), Positives = 134/230 (58%), Gaps = 13/230 (5%)
Query: 126 LKWYRLKAKKKMKSPNPEVRIRYKLEKAKRKEEWLIEKLRKYEVPRSPEPVHDPEILTEE 185
LK R K K++ + E +I YKL+ A+ KEE L+ L K E EP HDPE+LT E
Sbjct: 123 LKSLRWKKKREFQRMTAEEKILYKLKLARNKEERLVAALTKIEPDDPSEPTHDPEVLTPE 182
Query: 186 EKFYLKRTGEKKKNYVPXXXXXXXXXXXLNMHLHWKKHETVKVICKPCRPGQVYEYAEEL 245
E FY + G+K KNYVP LNMHLHWKKH+T++VI K P +V E A EL
Sbjct: 183 EHFYFLKMGQKSKNYVPVGRRGIYQGVILNMHLHWKKHQTLQVIVKTFTPDEVKEIASEL 242
Query: 246 TRLSKGTVIDIKPNNTIIFYRGKNYVQ--PKVMSPPDTLSKQKALEKYRYEQSLEHTSQF 303
RLS G V+DI+ NTII YRGKNY Q P++MSP TL ++KAL+K +Y + L ++
Sbjct: 243 ARLSGGIVLDIQEGNTIIMYRGKNYAQPPPEIMSPKVTLPRKKALDKSKYRERLRALRRY 302
Query: 304 IEKLEKELEDYQKHVALFK-----NRGETLETISSEETNVDDLTSSSDTE 348
I +LE+EL D + L + N E + IS D + S+S E
Sbjct: 303 IPRLEQELVDLHAQMKLARDYKGQNAAEDITCIS------DSVNSTSAKE 346
>Os09g0363100 CRS1/YhbY domain containing protein
Length = 947
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/173 (36%), Positives = 85/173 (49%), Gaps = 12/173 (6%)
Query: 178 DPEILTEEEKFYLKRTGEKKKNYVPXXXXXXXXXXXLNMHLHWKKHETVKVICKPCRPGQ 237
D E +T+EE+F L+R G K K ++ NMHLHWK E VKV+ K Q
Sbjct: 747 DLETVTDEERFLLRRIGLKMKAFLMLGRREVFDGTVQNMHLHWKHRELVKVLVKGKSFPQ 806
Query: 238 VYEYAEELTRLSKGTVIDIKPNN---TIIFYRGKNYVQPKVMSPPDTLSKQKAL----EK 290
V A L S G +I + II YRGKNY P+++ P + LS++KAL E
Sbjct: 807 VKHIAISLEAESGGVLISVDKTTKGYAIILYRGKNYKTPQILKPRNLLSRRKALARSIEL 866
Query: 291 YRYEQSLEHTSQF---IEKLEKELEDYQKHVALFKNRGETLETISSEETNVDD 340
R E H S I KL+ +L Q VA K E L+T+ ++ + DD
Sbjct: 867 QRREGLNHHISNLRDKIWKLKSQLVRMQ--VAGEKPDAELLQTVEADLSKDDD 917
>Os04g0464800 CRS1/YhbY domain containing protein
Length = 1042
Score = 82.8 bits (203), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 60/185 (32%), Positives = 90/185 (48%), Gaps = 8/185 (4%)
Query: 141 NPEVRIRYKLEKAKRKEEWLIEKLRKYEVPRSPEPVHDPEILTEEEKFYLKRTGEKKKNY 200
N E R+ + + K K E LIE+L E+ P E+++EEE++ L++ G K K++
Sbjct: 543 NVEARLSQAIAE-KEKTEKLIEEL---EMSSEPSRAETREVISEEERYMLRKVGLKMKSF 598
Query: 201 VPXXXXXXXXXXXLNMHLHWKKHETVKVICKPCRPGQVYEYAEELTRLSKGTVIDIK--- 257
+ NMHLHWK E VK+ICK V A L S G ++ ++
Sbjct: 599 LLLGRRGVFDGTVENMHLHWKYRELVKIICKEHNIKDVEYAARTLEAESGGILVAVERVS 658
Query: 258 PNNTIIFYRGKNYVQPKVMSPPDTLSKQKALEKYRYEQSLEHTSQFIEKLEKELEDYQKH 317
+ II YRGKNY +P + P L+K+ AL++ Q + + L K + DY K
Sbjct: 659 KAHAIIIYRGKNYQRPSTLRPKSLLNKKDALKRSVEYQRYKSLKLHVLNLSKNI-DYLKD 717
Query: 318 VALFK 322
FK
Sbjct: 718 QMFFK 722
>Os05g0145300 CRS1/YhbY domain containing protein
Length = 91
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/78 (47%), Positives = 49/78 (62%)
Query: 153 AKRKEEWLIEKLRKYEVPRSPEPVHDPEILTEEEKFYLKRTGEKKKNYVPXXXXXXXXXX 212
AK+K L++KL+KYE+P P P HDPE+LT E+ K+ G + +NYVP
Sbjct: 11 AKKKVALLLQKLKKYELPDLPAPRHDPELLTAEQLQAYKKIGFRNRNYVPVGVRGVFGGV 70
Query: 213 XLNMHLHWKKHETVKVIC 230
NMH+HWK HETV+V C
Sbjct: 71 VQNMHMHWKFHETVQVCC 88
>Os08g0360100 CRS1/YhbY domain containing protein
Length = 725
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 93/188 (49%), Gaps = 17/188 (9%)
Query: 147 RYKLEKAKRKEEWLIEKLRKYEVPRSPEPVH-------------DPEILTEEEKFYLKRT 193
+++LEK + +EW + L K ++ RS + + D E+LTEEE+ ++
Sbjct: 519 KHRLEKELKDQEWRLSMLTK-KIERSNQVLAKLHSSWSPSKKDGDRELLTEEERRIFRKI 577
Query: 194 GEKKKNYVPXXXXXXXXXXXLNMHLHWKKHETVKVICKPCRPGQVYEYAEELTRLSKGTV 253
G K +V +H HWK E VKVI K + Q+ + L + GT+
Sbjct: 578 GLKMDEHVLLGRRGVFEGVIEEIHQHWKHKEVVKVITKQNQASQITYTSMMLEVETGGTL 637
Query: 254 IDIK---PNNTIIFYRGKNYVQPKVMSPPDTLSKQKALEKYRYEQSLEHTSQFIEKLEKE 310
I I+ ++ II YRGKNY +P +P + L+K++AL++ Q F ++ +K
Sbjct: 638 IAIERFTTSHAIILYRGKNYRRPTKSAPSNLLTKREALQRSIEVQRRGSMKYFAQERKKS 697
Query: 311 LEDYQKHV 318
+++ ++ +
Sbjct: 698 IDELKREL 705
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.314 0.133 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,541,544
Number of extensions: 416391
Number of successful extensions: 979
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 972
Number of HSP's successfully gapped: 7
Length of query: 348
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 246
Effective length of database: 11,709,973
Effective search space: 2880653358
Effective search space used: 2880653358
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 156 (64.7 bits)