BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0298700 Os06g0298700|Os06g0298700
(345 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0298700 Glucose/ribitol dehydrogenase family protein 591 e-169
Os06g0299300 Glucose/ribitol dehydrogenase family protein 327 9e-90
Os06g0299100 Glucose/ribitol dehydrogenase family protein 320 8e-88
Os04g0116600 Glucose/ribitol dehydrogenase family protein 253 1e-67
Os06g0300000 Glucose/ribitol dehydrogenase family protein 252 3e-67
Os06g0299200 Glucose/ribitol dehydrogenase family protein 244 6e-65
Os06g0300200 243 2e-64
Os04g0483500 Similar to B-keto acyl reductase 174 1e-43
Os11g0432600 Similar to Beta-keto acyl reductase (Fragment) 173 2e-43
>Os06g0298700 Glucose/ribitol dehydrogenase family protein
Length = 345
Score = 591 bits (1524), Expect = e-169, Method: Compositional matrix adjust.
Identities = 300/345 (86%), Positives = 300/345 (86%)
Query: 1 MAGHVFMIRQESAPPAPPWWFLSLVFLGAAYVATVTLRLLAYLAFSLHRQPKDLRSRYGA 60
MAGHVFMIRQESAPPAPPWWFLSLVFLGAAYVATVTLRLLAYLAFSLHRQPKDLRSRYGA
Sbjct: 1 MAGHVFMIRQESAPPAPPWWFLSLVFLGAAYVATVTLRLLAYLAFSLHRQPKDLRSRYGA 60
Query: 61 WAVITGPTSGMGRAMALELARRGLNLVLVGRDPANLEEISNTVRSLHGVETKTVVFDLSL 120
WAVITGPTSGMGRAMALELARRGLNLVLVGRDPANLEEISNTVRSLHGVETKTVVFDLSL
Sbjct: 61 WAVITGPTSGMGRAMALELARRGLNLVLVGRDPANLEEISNTVRSLHGVETKTVVFDLSL 120
Query: 121 VATPHGDEPLRQLRETVEGLDVGVLMNNAGVGEPAMAYLHEADVEAWVRMMRVNLWAVTE 180
VATPHGDEPLRQLRETVEGLDVGVLMNNAGVGEPAMAYLHEADVEAWVRMMRVNLWAVTE
Sbjct: 121 VATPHGDEPLRQLRETVEGLDVGVLMNNAGVGEPAMAYLHEADVEAWVRMMRVNLWAVTE 180
Query: 181 VTAAVLPGMVERGRGAVVNIGSASSQAIPSFPLCTIYSATKRHVRGSFLPEPSPRAPFFV 240
VTAAVLPGMVERGRGAVVNIGSASSQAIPSFPLCTIYSATKRHVRGSFLPEPSPRAPFFV
Sbjct: 181 VTAAVLPGMVERGRGAVVNIGSASSQAIPSFPLCTIYSATKRHVRGSFLPEPSPRAPFFV 240
Query: 241 ATRMVENLAEARRLSPFTVTPXXXXXXXXXXXXXXXXXXXXXXXXXXCCGAPPPPRRTPC 300
ATRMVENLAEARRLSPFTVTP CCGAPPPPRRTPC
Sbjct: 241 ATRMVENLAEARRLSPFTVTPGAYARARRWGGSAAAARFARRTSGTGCCGAPPPPRRTPC 300
Query: 301 STGSSCAATWSRGXXXXXXXXXXXXXXXXXXXKFILGASSCVHEQ 345
STGSSCAATWSRG KFILGASSCVHEQ
Sbjct: 301 STGSSCAATWSRGRRCLSKSERRGRRRRRDSRKFILGASSCVHEQ 345
>Os06g0299300 Glucose/ribitol dehydrogenase family protein
Length = 330
Score = 327 bits (838), Expect = 9e-90, Method: Compositional matrix adjust.
Identities = 188/273 (68%), Positives = 211/273 (77%), Gaps = 14/273 (5%)
Query: 1 MAGHVFMIRQESAPPAPPWWFLSLVFLGAAYVATVTLRLLAYLAFS-LHRQPKDLRSRYG 59
MA HVFMIRQE+AP WWFLSL F+GAAY ATVTLR +AYLA HR DLR RYG
Sbjct: 1 MASHVFMIRQETAPA--QWWFLSLAFVGAAYAATVTLRFVAYLALCRCHRPKDDLRRRYG 58
Query: 60 AWAVITGPTSGMGRAMALELARRGLNLVLVGRDPANLEEISNTVRSLHGVETKTVVFDLS 119
WAV+TGPTSG+GRAMALELAR GLNLVLVGRDPA L EIS TVRSLH V+TKTVVFDLS
Sbjct: 59 EWAVVTGPTSGIGRAMALELARHGLNLVLVGRDPAILREISGTVRSLHKVKTKTVVFDLS 118
Query: 120 LVATPHGDEPLRQLRETVEGLDVGVLMNNAGVGEPAMAYLHEADVEAWVRMMRVNLWAVT 179
LV TP GDEPLR+LRE VEGLDVGV++NNAGV +P YLHEADVEAWVRM+RVN+ AVT
Sbjct: 119 LVWTPDGDEPLRRLREAVEGLDVGVVVNNAGVAKPGAVYLHEADVEAWVRMVRVNMSAVT 178
Query: 180 EVTAAVLPGMVERGRGAVVNIGSASSQAIPSFPLCTIYSATKRHV----RGSFLPEPSP- 234
EVTA VLPGMV RGRGA+VNIGSA S+ IP+ PL T+Y+ATKR+V R + S
Sbjct: 179 EVTAVVLPGMVSRGRGAIVNIGSAGSEYIPTLPLYTMYAATKRYVAQFSRSLHVEYASKG 238
Query: 235 -----RAPFFVATRMVENLAEAR-RLSPFTVTP 261
+APFFV TR++ EA +S FTVTP
Sbjct: 239 IHVQCQAPFFVDTRLMFRFEEAAGGVSLFTVTP 271
>Os06g0299100 Glucose/ribitol dehydrogenase family protein
Length = 329
Score = 320 bits (821), Expect = 8e-88, Method: Compositional matrix adjust.
Identities = 181/268 (67%), Positives = 203/268 (75%), Gaps = 15/268 (5%)
Query: 1 MAGHVF-MIRQESAPPAPPWWFLSLVFLGAAYVATVTLRLLAYLAFSLHRQPKDLRSRYG 59
MA H + M RQ+ PAP WWF SL FLGAAYVA VTLRLLAY+A L PKDLR RYG
Sbjct: 2 MASHFYGMFRQDDPAPAPAWWFQSLAFLGAAYVAGVTLRLLAYVAICLG-GPKDLR-RYG 59
Query: 60 AWAVITGPTSGMGRAMALELARRGLNLVLVGRDPANLEEISNTVRSLHG-VETKTVVFDL 118
AWAVITGPTSG+G AMALELARRGLNLVLVGRDPA L EIS T+RS HG V+TK VVFDL
Sbjct: 60 AWAVITGPTSGIGCAMALELARRGLNLVLVGRDPARLREISGTIRSRHGRVQTKAVVFDL 119
Query: 119 SLVATPHGDEPLRQLRETVEGLDVGVLMNNAGVGEPAMAYLHEADVEAWVRMMRVNLWAV 178
SL +TP GD+PLR+LRE V GLDVGV++NNA G P YLHEADVE WVRM RVN+ AV
Sbjct: 120 SLASTPDGDQPLRRLREAVAGLDVGVVVNNASEGRPGAVYLHEADVEEWVRMARVNVSAV 179
Query: 179 TEVTAAVLPGMVERGR-GAVVNIGSASSQAIPSFPLCTIYSATKRHVRG---SFLPEPSP 234
TEVTAAVLPGMVERGR GAVVN+GSA+S+AIPSFPL T+Y++TKR+V S E +
Sbjct: 180 TEVTAAVLPGMVERGRGGAVVNLGSAASEAIPSFPLYTMYASTKRYVAQFSRSLHVEYAN 239
Query: 235 RA-------PFFVATRMVENLAEARRLS 255
+ PFFV T M+ L E LS
Sbjct: 240 KGIHVQCQTPFFVETTMLAKLEEEVGLS 267
>Os04g0116600 Glucose/ribitol dehydrogenase family protein
Length = 319
Score = 253 bits (647), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 140/256 (54%), Positives = 172/256 (67%), Gaps = 13/256 (5%)
Query: 13 APPAPPWWFLSLVFLGAAYVATVTLRLLAYLAFSLHRQPKDLRSRYGAWAVITGPTSGMG 72
A A P WF SL LGAAY+ V LRLL YLA L R+PKDLR YG WAV+TGPT+G+G
Sbjct: 2 ATGAAPLWFTSLAGLGAAYLTVVFLRLLPYLALYL-RRPKDLRRCYGEWAVVTGPTTGLG 60
Query: 73 RAMALELARRGLNLVLVGRDPANLEEISNTVRSLHG--VETKTVVFDLSLVATPHGDEPL 130
R+MA+ELARRG NLVL+ D NL E+S +R H V T+TVVFDLS V T G+E +
Sbjct: 61 RSMAMELARRGFNLVLLDLDRDNLREVSEAIREAHAGAVATRTVVFDLSTVGTGAGEEGM 120
Query: 131 RQLRETVEGLDVGVLMNNAGVGEPAMAYLHEADVEAWVRMMRVNLWAVTEVTAAVLPGMV 190
R+LRE V+G++VG+L+NNA V P Y HEADVE V M+RVN A+T VTAAVLP M
Sbjct: 121 RRLREAVDGVEVGMLVNNAAVARPGALYFHEADVERLVAMIRVNAMALTAVTAAVLPAMA 180
Query: 191 ERGRGAVVNIGSASSQAIPSFPLCTIYSATKRHVR---GSFLPEPSPRA-------PFFV 240
RGRGA+VN+GS S+ A+PSFPL T+YS+TKR+V S E + PF+V
Sbjct: 181 RRGRGAIVNVGSGSTVAVPSFPLYTVYSSTKRYVEQLSKSLYVEYKGKGIDVQLQVPFYV 240
Query: 241 ATRMVENLAEARRLSP 256
T M+ + R L P
Sbjct: 241 HTNMLSAAIKDRMLLP 256
>Os06g0300000 Glucose/ribitol dehydrogenase family protein
Length = 365
Score = 252 bits (643), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 150/254 (59%), Positives = 186/254 (73%), Gaps = 17/254 (6%)
Query: 7 MIRQESAPPAPPWWFLSLVFLGAAYVATVTLRLLAYLAFSLHRQPKDLRSRYGAWAVITG 66
++RQ+ PPW F++LV +GA +VA + RL ++L L R R YGAWAVITG
Sbjct: 13 VLRQQQ----PPWPFVALVIVGAIHVAALAFRLASHLCLCLRRPRDLRRR-YGAWAVITG 67
Query: 67 PTSGMGRAMALELARRGLNLVLVGRDPANLEEISNTVRSLH--GVETKTVVFDLSLVATP 124
PTSG+GR++ALELARRGLNLVLVGRDPA L ++S + L GVET++VVFDL+L +T
Sbjct: 68 PTSGIGRSVALELARRGLNLVLVGRDPAKLRDVSEAISKLGDGGVETRSVVFDLALASTA 127
Query: 125 HGDEPLRQLRETVEGLDVGVLMNNAGVGEPAMAYLHEADVEAWVRMMRVNLWAVTEVTAA 184
GDE +R+LRE V GLDVGV++NNAGV P YLHEA+ EAWVRM+RVNLWAVTEVTAA
Sbjct: 128 EGDEAVRRLREAVAGLDVGVVVNNAGVARPCAVYLHEAEAEAWVRMIRVNLWAVTEVTAA 187
Query: 185 VLPGMVERGRGAVVNIGSASSQAIPSFPLCTIYSATKRHV----RGSFLPEPSP------ 234
VLPGMV RGRGAVVNIGS S++AIPSFPL ++Y+ATKR+V R ++ S
Sbjct: 188 VLPGMVARGRGAVVNIGSGSTEAIPSFPLYSVYAATKRYVAEFSRSLYVEYKSKGIDVQC 247
Query: 235 RAPFFVATRMVENL 248
+AP FVAT M +
Sbjct: 248 QAPLFVATNMTSGV 261
>Os06g0299200 Glucose/ribitol dehydrogenase family protein
Length = 296
Score = 244 bits (624), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 149/274 (54%), Positives = 174/274 (63%), Gaps = 50/274 (18%)
Query: 1 MAGHVFMIRQESAPPAPPWWFLSLVFLGAAYVATVTLRLLAYLAFSLHRQPK-DLRSRYG 59
MA HV +IRQ+ A PWWF+ F+GAAYV V LRLLAYL L R PK DLR RYG
Sbjct: 1 MASHVLLIRQD---IATPWWFILRAFVGAAYVGFVALRLLAYLWLCLPRMPKGDLRRRYG 57
Query: 60 AWAVITGPTSGMGRAMALELARRGLNLVLVGRDPANLEEISNTVRSLHGVETKTVVFDLS 119
WAV+TGPTSG+GRAMALELAR GLNLVLVGRDPA
Sbjct: 58 EWAVVTGPTSGIGRAMALELARHGLNLVLVGRDPA------------------------- 92
Query: 120 LVATPHGDEPLRQLRETVEGLDVGVLMNNAGVGEPAMAYLHEADVEAWVRMMRVNLWAVT 179
LRQ+ +T+ L +++NNAGV EP YLHEADVEAW RM+RVN+ AVT
Sbjct: 93 ---------ILRQISDTIASLSELIVVNNAGVAEPGAVYLHEADVEAWARMVRVNVSAVT 143
Query: 180 EVTAAVLPGMVERGR-GAVVNIGSASSQAIPSFPLCTIYSATKRHV----RGSFLPEPSP 234
EVTAAVLPGMV RGR GAVVNIGSA+S++IPS PL T+YS+TKR+V R + S
Sbjct: 144 EVTAAVLPGMVARGRGGAVVNIGSAASESIPSLPLYTMYSSTKRYVAQFSRSLHVEYASK 203
Query: 235 ------RAPFFVATRMVENLAEAR-RLSPFTVTP 261
+APF V TR++ EA +S FTVTP
Sbjct: 204 GIHVQCQAPFLVDTRLMFRFEEAAGGVSLFTVTP 237
>Os06g0300200
Length = 457
Score = 243 bits (620), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 144/259 (55%), Positives = 182/259 (70%), Gaps = 16/259 (6%)
Query: 18 PWWFLSLVFLGAAYVATVTLRLLAYLAFSLHRQPK-DLRSRYGAWAVITGPTSGMGRAMA 76
P W + L LGA +VA LRL+A L F L +P+ DLR RYG+WAV+TGPTSG+GRAMA
Sbjct: 2 PIWLILLASLGAVHVAADVLRLVATLTFGLRARPRGDLRRRYGSWAVVTGPTSGIGRAMA 61
Query: 77 LELARRGLNLVLVGRDPANLEEISNTV---RSLHGVETKTVVFDLSLVATPHGDEPLRQL 133
LELA RGLN+VLVGRDPA L +++ + S HGV TKTVVFD SLV+T G++ + L
Sbjct: 62 LELAGRGLNVVLVGRDPAKLRDVAGAIARSHSHHGVRTKTVVFDFSLVSTVQGEKAMAAL 121
Query: 134 RETVEGLDVGVLMNNAGVGEPAMAYLHEADVEAWVRMMRVNLWAVTEVTAAVLPGMVERG 193
RETVEGLDVGV++NNAGV +P +LHE +VE +RM+RVN+ A+T+VTAAVLPGMV RG
Sbjct: 122 RETVEGLDVGVVVNNAGVAKPGAMFLHEVEVEPLMRMIRVNMLALTKVTAAVLPGMVMRG 181
Query: 194 RGAVVNIGSASSQAIPSFPLCTIYSATKRHVRGSFLP-----------EPSPRAPFFVAT 242
RGAVVNIGSAS++A+PSFPL ++Y+ TK +V G F + + P V T
Sbjct: 182 RGAVVNIGSASAEALPSFPLYSVYAGTKAYV-GEFSRGLSVEYKRKGIDVQCQVPCLVET 240
Query: 243 RMVENLAEARRLSPFTVTP 261
M+ + LS F VTP
Sbjct: 241 NMISRAMKDIFLSQFVVTP 259
>Os04g0483500 Similar to B-keto acyl reductase
Length = 318
Score = 174 bits (440), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 98/214 (45%), Positives = 131/214 (61%), Gaps = 4/214 (1%)
Query: 12 SAPPAPPWWFLSLVFLGAAYVATVTLRLLAYLAFSLHRQPKDLRSRYGAWAVITGPTSGM 71
A A P W L+L +G AT + RL +L + R K LR RYG WAV+TG T G+
Sbjct: 2 DALSAQPAWALALAGVGLMVAATASARLARWLYAAFLRPGKPLRRRYGEWAVVTGATDGI 61
Query: 72 GRAMALELARRGLNLVLVGRDPANLEEISNTVRSLH-GVETKTVVFDLSLVATPHGDEPL 130
GRA+A A G++LVLVGR P L +S +R H E +T V D A +
Sbjct: 62 GRALAFRFAGAGMSLVLVGRSPDKLAAVSGEIRGKHPRAEVRTFVLDF---AAEGLAAKV 118
Query: 131 RQLRETVEGLDVGVLMNNAGVGEPAMAYLHEADVEAWVRMMRVNLWAVTEVTAAVLPGMV 190
L +++ GLDVGVL+N+AG+ P Y HE D E ++R+N+ A+T VT AVLPGMV
Sbjct: 119 AALGDSIRGLDVGVLVNSAGMSYPYARYFHEVDEELMRNLIRLNVEALTRVTHAVLPGMV 178
Query: 191 ERGRGAVVNIGSASSQAIPSFPLCTIYSATKRHV 224
ER RGA+VNIGS +S +PS+PL ++Y+ATK +V
Sbjct: 179 ERKRGAIVNIGSGASSILPSYPLYSVYAATKAYV 212
>Os11g0432600 Similar to Beta-keto acyl reductase (Fragment)
Length = 339
Score = 173 bits (438), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 99/216 (45%), Positives = 132/216 (61%), Gaps = 12/216 (5%)
Query: 18 PWWFLSLVFLGAAYVATVTLRLLAYLAFSLHRQPKDLRSRYGAWAVITGPTSGMGRAMAL 77
P WF++LV +G LA+L + R K L RYG WAV+TG T G+GRA+AL
Sbjct: 19 PMWFVALVAVGLHAAVVWAGTFLAWLRRAFLRPGKGLCRRYGEWAVVTGATDGIGRAVAL 78
Query: 78 ELARRGLNLVLVGRDPANLEEISNTVRSLH-GVETKTVVFDLSLVATPHGDE-------- 128
ELARRGL+LVLVGR+P L + VR+ + +TVVFDL A P D+
Sbjct: 79 ELARRGLHLVLVGRNPGKLSGVCKEVRAAAPACKVRTVVFDL---AAPGDDDVGGGELSR 135
Query: 129 PLRQLRETVEGLDVGVLMNNAGVGEPAMAYLHEADVEAWVRMMRVNLWAVTEVTAAVLPG 188
+ ++ VEGLDVG+L+NNAG P AY HE W ++RVN+ A T + A++P
Sbjct: 136 GVARVAAAVEGLDVGLLVNNAGATYPCAAYFHEVPDAVWEAVLRVNVVAATRIARALVPA 195
Query: 189 MVERGRGAVVNIGSASSQAIPSFPLCTIYSATKRHV 224
M +GRGAVVN+GS SS +P+FPL +Y+ATK +V
Sbjct: 196 MAAKGRGAVVNVGSGSSVVVPAFPLYAVYAATKAYV 231
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.134 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,276,985
Number of extensions: 432554
Number of successful extensions: 1670
Number of sequences better than 1.0e-10: 10
Number of HSP's gapped: 1657
Number of HSP's successfully gapped: 11
Length of query: 345
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 243
Effective length of database: 11,709,973
Effective search space: 2845523439
Effective search space used: 2845523439
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 156 (64.7 bits)