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Os06g0300000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Glucose/ribitol dehydrogenase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.62 (0.0309) R2 : 0.825
β1 : 3.23 (0.114) R2dD : 0.329 R2D : 0.314
β2 : 2.27 (0.0819) R2dC : 0.322 R2C : 0.367
β3 : -1.32 (0.101) R2dE : 0.078 R2E : 0.194
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.548 (0.0679) R2dN8 : 0.0349 R2N8 : 0.00587
σ : 0.573
deviance : 151.58
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C
peak time of C : 18.9
E
wheather : temperature
threshold : 24.3
memory length : 293
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 6.03
open length of G : 4.8

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
152.99 0.581 7.62 3.24 2.29 -1.29 -0.187 -0.0633 0.548 18.8 24.8 279 6.07 5.03
152.19 0.575 7.62 3.24 2.27 -1.34 -0.197 -- 0.542 18.8 24.5 298 5.98 4.87
152.99 0.576 7.62 3.24 2.28 -1.28 -- -0.0412 0.55 18.8 24.7 280 6.06 5.05
151.58 0.573 7.62 3.23 2.27 -1.32 -- -- 0.548 18.9 24.3 293 6.03 4.8
203.59 0.665 7.58 3.17 -- -1.81 -- 0.632 0.605 -- 29.4 213 1.13 11.3
195.83 0.656 7.59 3.43 2.57 -- -0.309 -- 0.768 19.6 -- -- -- --
196.09 0.656 7.59 3.44 2.57 -- -- -- 0.767 19.6 -- -- -- --
197.73 0.655 7.58 3.34 -- -1.82 -- -- 0.521 -- 29.1 237 0.799 11
417.91 0.952 7.69 -- 2.11 -2 -- -- 0.194 18.3 24.1 373 4.95 5.6
550.57 1.1 7.52 3.4 -- -- -- -- 0.728 -- -- -- -- --
507.74 1.05 7.67 -- 2.54 -- -- -- 0.384 19.7 -- -- -- --
461.42 1 7.69 -- -- -2.51 -- -- -0.0217 -- 25.13 411 0.22 11.2
855.79 1.37 7.61 -- -- -- -- -- 0.35 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 153.68 temperature 25 270 < th dose independent rect. 6 5
13 158.35 temperature 25 270 > th dose independent rect. 24 17
27 160.84 temperature 20 720 < th dose independent rect. 23 6
30 161.20 temperature 20 720 > th dose independent rect. 23 7
47 162.17 temperature 25 270 > th dose independent rect. 6 11
51 162.48 temperature 20 720 > th dose dependent rect. 23 10
52 162.49 temperature 30 270 < th dose dependent rect. 4 8
67 162.90 temperature 25 270 < th dose independent sin 3 NA
69 163.07 temperature 20 270 > th dose dependent rect. 23 17
87 163.53 temperature 25 270 > th dose independent sin 3 NA
89 163.59 radiation 10 1440 < th dose independent rect. 15 2
103 163.90 temperature 20 270 > th dose dependent sin 4 NA
111 164.23 temperature 25 270 < th dose dependent rect. 7 1
112 164.23 temperature 20 270 > th dose dependent rect. 4 12
127 164.52 temperature 25 270 < th dose dependent rect. 6 3
149 165.10 temperature 20 720 > th dose independent rect. 4 1
185 165.90 radiation 10 1440 < th dose independent rect. 15 15
197 166.13 humidity 80 1440 > th dose independent rect. 21 16
224 166.71 radiation 10 1440 < th dose independent rect. 15 4
230 166.80 radiation 10 1440 < th dose independent rect. 15 10
295 167.76 radiation 10 1440 < th dose dependent rect. 15 15
312 168.07 temperature 30 270 < th dose dependent sin 2 NA
313 168.07 humidity 90 720 < th dose dependent rect. 18 18
320 168.16 humidity 80 1440 < th dose independent rect. 21 16
336 168.45 radiation 10 1440 < th dose dependent sin 13 NA
360 168.95 humidity 80 1440 > th dose independent sin 7 NA
373 169.06 humidity 60 1440 > th dose dependent rect. 23 15
414 169.39 radiation 10 1440 < th dose dependent rect. 8 22
418 169.42 temperature 10 720 > th dose dependent rect. 23 10
423 169.47 temperature 30 270 < th dose dependent rect. 9 1
452 169.76 humidity 90 720 < th dose dependent sin 9 NA
491 170.01 humidity 90 1440 < th dose dependent sin 7 NA
501 170.07 humidity 60 1440 > th dose dependent sin 5 NA
529 170.21 temperature 25 270 < th dose independent rect. 23 13
542 170.27 temperature 30 720 < th dose dependent rect. 24 10
585 170.50 humidity 90 30 < th dose independent rect. 18 21
625 170.64 temperature 20 4320 < th dose dependent rect. 16 3
638 170.69 temperature 30 720 < th dose dependent rect. 1 4
652 170.75 humidity 80 270 > th dose dependent rect. 22 18
678 170.85 humidity 80 30 > th dose dependent rect. 23 19
696 170.94 humidity 80 1440 < th dose independent sin 8 NA
700 170.94 radiation 10 1440 < th dose dependent rect. 24 19
702 170.95 radiation 10 1440 < th dose dependent rect. 3 16
741 171.00 radiation 10 1440 < th dose dependent rect. 3 22
744 171.00 radiation 10 1440 < th dose dependent rect. 20 23
747 171.01 radiation 10 1440 < th dose dependent no NA NA
769 171.09 humidity 90 30 < th dose independent rect. 18 19
773 171.10 radiation 10 1440 < th dose dependent sin 22 NA
795 171.17 radiation 10 1440 < th dose independent sin 14 NA
825 171.24 humidity 90 270 < th dose independent rect. 16 20
826 171.24 radiation 40 1440 < th dose dependent rect. 18 1
851 171.32 radiation 10 1440 < th dose dependent rect. 15 23
885 171.44 humidity 90 30 < th dose independent rect. 20 17
890 171.45 radiation 10 1440 < th dose dependent rect. 7 12
892 171.45 radiation 10 1440 < th dose dependent rect. 7 14
902 171.47 radiation 10 1440 < th dose dependent rect. 18 23
911 171.50 radiation 10 1440 < th dose dependent rect. 7 18