Os06g0299200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Glucose/ribitol dehydrogenase family protein.
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Os06g0299200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Glucose/ribitol dehydrogenase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = < th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 488.82 | 1.04 | 5.74 | 1.53 | 2.09 | -1.92 | 1.18 | -8.3 | 1.3 | 2.78 | 4.986 | 4305 | 20 | 1.15 |
| 550.19 | 1.09 | 5.69 | 1.77 | 2.1 | -2.28 | 2.08 | -- | 1.33 | 2.86 | 7.12 | 4311 | 20 | 1.17 |
| 493.53 | 1.03 | 5.75 | 1.49 | 2.09 | -1.91 | -- | -8.44 | 1.3 | 2.71 | 4.996 | 4307 | 20 | 1.16 |
| 541.48 | 1.08 | 5.69 | 1.78 | 2.14 | -2.3 | -- | -- | 1.34 | 2.88 | 7.199 | 5751 | 20 | 1.15 |
| 742.47 | 1.27 | 5.76 | 1.71 | -- | -2.15 | -- | -8.64 | 1.39 | -- | 4.995 | 4299 | 19.9 | 2.27 |
| 685.76 | 1.23 | 5.71 | 1.9 | 2.07 | -- | 1.44 | -- | 1.25 | 2.78 | -- | -- | -- | -- |
| 692.86 | 1.23 | 5.72 | 1.87 | 2.07 | -- | -- | -- | 1.24 | 2.71 | -- | -- | -- | -- |
| 795.43 | 1.31 | 5.69 | 1.91 | -- | -2.5 | -- | -- | 1.53 | -- | 7.1 | 5752 | 20 | 1.15 |
| 607.77 | 1.15 | 5.69 | -- | 2.19 | -2.79 | -- | -- | 1.34 | 2.76 | 7.8 | 5754 | 20 | 1.08 |
| 942.97 | 1.43 | 5.71 | 1.96 | -- | -- | -- | -- | 1.3 | -- | -- | -- | -- | -- |
| 785.07 | 1.31 | 5.76 | -- | 2.11 | -- | -- | -- | 1.04 | 2.72 | -- | -- | -- | -- |
| 864.85 | 1.37 | 5.7 | -- | -- | -2.96 | -- | -- | 1.33 | -- | 8.282 | 5756 | 20 | 1.1 |
| 1044.18 | 1.51 | 5.75 | -- | -- | -- | -- | -- | 1.08 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 494.37 | wind | 5.0 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 2 | 495.09 | wind | 5.0 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 5 | 503.29 | wind | 3.0 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 6 | 507.89 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 7 | 22 |
| 8 | 510.50 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 19 | 6 |
| 10 | 511.64 | temperature | 20.0 | 270 | > th | dose independent | rect. | 6 | 22 |
| 22 | 516.88 | temperature | 20.0 | 270 | > th | dose independent | rect. | 19 | 23 |
| 29 | 519.45 | temperature | 20.0 | 270 | > th | dose independent | rect. | 21 | 14 |
| 50 | 522.94 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 22 | 3 |
| 51 | 523.08 | temperature | 20.0 | 270 | < th | dose independent | rect. | 24 | 23 |
| 53 | 523.11 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 7 | 23 |
| 61 | 524.31 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 11 | 23 |
| 68 | 525.09 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 71 | 525.52 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 23 | 2 |
| 72 | 525.71 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 20 | 2 |
| 82 | 526.79 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 13 | 22 |
| 84 | 527.22 | temperature | 20.0 | 270 | < th | dose independent | rect. | 18 | 22 |
| 87 | 527.38 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 20 | 1 |
| 89 | 527.42 | wind | 7.0 | 4320 | < th | dose independent | rect. | 19 | 6 |
| 96 | 527.82 | temperature | 20.0 | 270 | < th | dose independent | rect. | 9 | 23 |
| 99 | 527.91 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 115 | 528.29 | temperature | 20.0 | 270 | < th | dose independent | rect. | 15 | 22 |
| 137 | 528.80 | temperature | 20.0 | 270 | < th | dose independent | no | NA | NA |
| 141 | 529.06 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 142 | 529.06 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 20 | 1 |
| 155 | 529.97 | wind | 7.0 | 4320 | > th | dose independent | rect. | 17 | 8 |
| 164 | 530.51 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 166 | 530.52 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 15 | 20 |
| 168 | 530.69 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 20 | 3 |
| 177 | 531.04 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 17 | 18 |
| 185 | 531.34 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 187 | 531.34 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 188 | 531.39 | temperature | 20.0 | 270 | > th | dose independent | no | NA | NA |
| 204 | 532.25 | temperature | 20.0 | 270 | < th | dose independent | rect. | 3 | 23 |
| 218 | 532.87 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 251 | 534.02 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 259 | 534.63 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 269 | 535.15 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 15 | 6 |
| 283 | 535.64 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 12 | 9 |
| 289 | 535.83 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 20 | 1 |
| 303 | 536.12 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 15 | 3 |
| 310 | 536.25 | temperature | 15.0 | 90 | > th | dose dependent | no | NA | NA |
| 321 | 536.44 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 7 | 14 |
| 331 | 536.63 | temperature | 20.0 | 270 | < th | dose independent | sin | 9 | NA |
| 379 | 536.96 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 394 | 537.03 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 399 | 537.12 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 15 | 4 |
| 409 | 537.24 | temperature | 30.0 | 90 | < th | dose dependent | no | NA | NA |
| 426 | 537.55 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 435 | 537.71 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 21 | 23 |
| 449 | 537.88 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 16 | 1 |
| 453 | 537.93 | temperature | 20.0 | 270 | > th | dose independent | sin | 9 | NA |
| 459 | 538.00 | temperature | 20.0 | 270 | > th | dose independent | rect. | 13 | 23 |
| 547 | 538.77 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 17 | 23 |
| 585 | 539.32 | wind | 7.0 | 4320 | > th | dose independent | rect. | 17 | 5 |
| 696 | 541.42 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 19 | 23 |
| 698 | 541.45 | temperature | 20.0 | 720 | > th | dose independent | rect. | 16 | 10 |
| 699 | 541.47 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 723 | 542.04 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 5 | 18 |
| 891 | 545.51 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 3 | 20 |
| 905 | 545.77 | temperature | 20.0 | 270 | < th | dose dependent | rect. | 20 | 23 |
| 911 | 545.93 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 916 | 546.01 | wind | 5.0 | 4320 | > th | dose dependent | sin | 14 | NA |
| 941 | 546.22 | temperature | 20.0 | 270 | < th | dose dependent | rect. | 17 | 23 |
| 942 | 546.28 | temperature | 20.0 | 270 | < th | dose dependent | no | NA | NA |
| 945 | 546.29 | temperature | 20.0 | 270 | < th | dose dependent | rect. | 14 | 23 |
| 981 | 546.67 | temperature | 20.0 | 270 | < th | dose dependent | rect. | 9 | 23 |
| 992 | 546.89 | atmosphere | 1005.0 | 14400 | < th | dose dependent | rect. | 24 | 1 |