BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0299200 Os06g0299200|Os06g0299200
         (296 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G67730.1  | chr1:25391676-25393365 FORWARD LENGTH=319          184   4e-47
AT1G24470.1  | chr1:8674056-8676277 FORWARD LENGTH=313            171   5e-43
AT1G49670.2  | chr1:18381591-18386021 REVERSE LENGTH=653           53   2e-07

>AT1G67730.1 | chr1:25391676-25393365 FORWARD LENGTH=319
          Length = 318

 Score =  184 bits (468), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 103/268 (38%), Positives = 145/268 (54%), Gaps = 38/268 (14%)

Query: 54  RRYGEWAVVTGPTSGIGRAMALELARHGLNLVLVGRDPAILRQISDTIAS---------- 103
           RRYG WA++TGPT GIG+A A +LA+ GLNL+LV R+P  L+ +SD+I S          
Sbjct: 48  RRYGSWAIITGPTDGIGKAFAFQLAQKGLNLILVARNPDKLKDVSDSIRSKYSQTQILTV 107

Query: 104 ---------------------LSELIVVNNAGVAEPGAVYLHEADVEAWARMVRVNVSAV 142
                                L   I++NNAG++ P A Y HE D E    ++++NV   
Sbjct: 108 VMDFSGDIDEGVKRIKESIEGLDVGILINNAGMSYPYAKYFHEVDEELINNLIKINVEGT 167

Query: 143 TEVTAAVLPGMXXXXXXXXXXNIGSAASESIPSLPLYTMYSSTKRYVAQFSRSLHVEYAS 202
           T+VT AVLP M          N+GS A+  IPS P Y++Y+  K YV QF++ LHVEY  
Sbjct: 168 TKVTQAVLPNMLKRKKGAII-NMGSGAAALIPSYPFYSVYAGAKTYVDQFTKCLHVEYKK 226

Query: 203 KGIHVQCQAPFLVDTRLMFRFEEAAGGVSLFTVTPDAYARAAVAWIGRGGALCTPGVRHQ 262
            GI VQCQ P  V T+ M +   A    S    +P+ YA+AA+ ++G   A CTP   H 
Sbjct: 227 SGIDVQCQVPLYVATK-MTKIRRA----SFLVASPEGYAKAALRFVGY-EAQCTPYWPHA 280

Query: 263 LLRRMAAAVPDSVHDWILLHLTTWNRKR 290
           L+  + +A+P+SV +   +      RK+
Sbjct: 281 LMGAVVSALPESVFESFNIKRCLQIRKK 308



>AT1G24470.1 | chr1:8674056-8676277 FORWARD LENGTH=313
          Length = 312

 Score =  171 bits (432), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 103/253 (40%), Positives = 137/253 (54%), Gaps = 32/253 (12%)

Query: 54  RRYGEWAVVTGPTSGIGRAMALELARHGLNLVLVGRDPAILRQISDT------------- 100
           +RYG WA+VTG T GIGRA A ELA+HGLNL+LV R+ + L  +SD              
Sbjct: 49  KRYGSWAMVTGATEGIGRAFAHELAKHGLNLILVSRNLSKLESVSDDFQQEFPHIKIKII 108

Query: 101 ----------------IASLSELIVVNNAGVAEPGAVYLHEADVEAWARMVRVNVSAVTE 144
                           I  L   I++NN G+  P A++ HE D   W +++RVN+ A T 
Sbjct: 109 PFDFSSEGGYGAIEEGIKGLEVGILINNVGITYPRAMFFHEVDQLTWTKILRVNLEATTW 168

Query: 145 VTAAVLPGMXXXXXXXXXXNIGSAASESIPSLPLYTMYSSTKRYVAQFSRSLHVEYASKG 204
           VT +++ G           NI S A+  +PS PLY +Y++TK YV   SRSLHVEY   G
Sbjct: 169 VTRSLI-GPMLHRRRGAIVNISSGAAVVVPSHPLYAIYAATKAYVDALSRSLHVEYKQFG 227

Query: 205 IHVQCQAPFLVDTRLMFRFEEAAGGVSLFTVTPDAYARAAVAWIGRGGALCTPGVRHQLL 264
           I VQCQ P  V TR++     A    SLF  +P+ YA+AAVA IG  G+ C+P   H L 
Sbjct: 228 IDVQCQVPLYVSTRMVSEV-AAIDKPSLFVPSPEVYAKAAVAQIGI-GSRCSPFWAHSLQ 285

Query: 265 RRMAAAVPDSVHD 277
             +   VPD++ D
Sbjct: 286 WFLVGLVPDNLVD 298



>AT1G49670.2 | chr1:18381591-18386021 REVERSE LENGTH=653
          Length = 652

 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 53/202 (26%), Positives = 83/202 (41%), Gaps = 42/202 (20%)

Query: 57  GEWAVVTGPTSGIGRAMALELARHGL---------------------------------N 83
           G  A+VTG  SGIGRA+ L LA  G+                                 +
Sbjct: 6   GLSALVTGGASGIGRALCLALAEKGVFVTVADFSEEKGQETTSLVREANAKFHQGLSFPS 65

Query: 84  LVLVGRDPA----ILRQISDTIASLSEL-IVVNNAGVAEPGAVYLHEAD-VEAWARMVRV 137
            + V  D      +L      +A+   L I +NNAG++ P      + D  ++W   + V
Sbjct: 66  AIFVKCDVTNRGDLLAAFDKHLATFGTLDICINNAGISTPLRFDKDDTDGSKSWKHTINV 125

Query: 138 NVSAVTEVTAAVLPGMXXXXXXXXXXNIGSAASESIPSLPLYTMYSSTKRYVAQFSRSLH 197
           ++ AV E T   +  M          N+GSAA   +  +P+  +Y+++K  V  F+RSL 
Sbjct: 126 DLIAVVEGTQLAIKAMKAKQKPGVIINMGSAA--GLYPMPVDPIYAASKAGVVLFTRSLA 183

Query: 198 VEYASKGIHVQCQAPFLVDTRL 219
             Y  +GI +    P  + T L
Sbjct: 184 Y-YRRQGIRINVLCPEFIKTDL 204



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.323    0.134    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,236,265
Number of extensions: 174272
Number of successful extensions: 417
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 415
Number of HSP's successfully gapped: 5
Length of query: 296
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 198
Effective length of database: 8,419,801
Effective search space: 1667120598
Effective search space used: 1667120598
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 111 (47.4 bits)