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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0298700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Glucose/ribitol dehydrogenase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.2 (0.0165) R2 : 1.12e-06
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.000784 (0.0346) R2dN8 : 1.45e-06 R2N8 : 1.12e-06
σ : 0.31
deviance : 44.07
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
40.97 0.301 3.21 0.0634 0.159 -0.129 -0.247 -0.955 -0.0173 6.93 39.95 5900 -- --
42.06 0.302 3.21 -0.00764 0.162 -0.195 -0.216 -- -0.044 6.5 42 4329 -- --
41.09 0.299 3.21 0.0606 0.166 -0.113 -- -0.963 -0.0133 6.79 38 6349 -- --
42.21 0.303 3.21 -0.0164 0.158 -0.205 -- -- -0.0487 6.61 36.43 4327 -- --
42.43 0.303 3.21 0.0614 -- -0.131 -- -0.951 -0.0136 -- 36.91 5841 -- --
42.59 0.306 3.2 -0.0223 0.158 -- -0.26 -- -0.00551 6.83 -- -- -- --
42.76 0.306 3.2 -0.0269 0.157 -- -- -- -0.00489 6.76 -- -- -- --
43.51 0.307 3.21 -0.0138 -- -0.209 -- -- -0.0451 -- 34.06 4265 -- --
42.22 0.303 3.21 -- 0.159 -0.212 -- -- -0.0475 6.69 35.57 4327 -- --
44.05 0.31 3.2 -0.0233 -- -- -- -- -0.0018 -- -- -- -- --
42.78 0.306 3.2 -- 0.157 -- -- -- -0.00189 6.77 -- -- -- --
43.52 0.307 3.21 -- -- -0.211 -- -- -0.0438 -- 34.84 4265 -- --
44.07 0.31 3.2 -- -- -- -- -- 0.000784 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 39.27 atmosphere 1000.0 10 > th dose independent rect. 21 23
5 39.46 temperature 15.0 10 > th dose independent rect. 21 23
7 39.49 humidity 90.0 10 < th dose dependent rect. 20 1
8 39.56 atmosphere 1010.0 30 < th dose dependent rect. 20 1
9 39.59 temperature 15.0 1440 > th dose independent rect. 21 1
11 39.61 wind 3.0 10 > th dose independent rect. 20 1
13 39.62 humidity 90.0 10 < th dose independent rect. 20 1
14 39.63 wind 5.0 10 < th dose independent rect. 20 1
15 39.63 temperature 20.0 10 > th dose independent rect. 20 1
16 39.63 wind 1.0 10 > th dose dependent rect. 20 1
17 39.63 temperature 25.0 10 > th dose dependent rect. 20 1
19 39.63 radiation 10.0 43200 < th dose dependent rect. 21 1
23 39.64 temperature 10.0 10 > th dose independent rect. 20 1
25 39.64 temperature 30.0 10 < th dose independent rect. 20 1
26 39.64 humidity 50.0 10 > th dose independent rect. 20 1
29 39.64 atmosphere 995.0 10 > th dose independent rect. 20 1
30 39.64 atmosphere 1010.0 10 < th dose independent rect. 20 1
32 39.64 radiation 1.0 10 < th dose independent rect. 20 1
37 39.64 precipitation 0.1 10 < th dose independent rect. 20 1
39 39.64 temperature 10.0 10 > th dose dependent rect. 20 1
40 39.64 radiation 1.0 10 < th dose dependent rect. 20 1
45 39.64 precipitation 0.1 10 < th dose dependent rect. 20 1
46 39.65 atmosphere 1005.0 10 > th dose independent rect. 20 1
48 39.66 wind 9.0 10 < th dose dependent rect. 20 1
50 39.66 radiation 10.0 4320 < th dose dependent rect. 21 1
55 39.67 temperature 30.0 30 < th dose dependent rect. 20 1
94 39.69 humidity 50.0 10 > th dose dependent rect. 20 1
96 39.69 atmosphere 995.0 10 > th dose dependent rect. 20 1
113 39.71 wind 9.0 30 < th dose independent rect. 21 23
119 39.72 temperature 30.0 1440 < th dose independent rect. 21 1
124 39.72 humidity 50.0 1440 > th dose independent rect. 21 1
130 39.72 atmosphere 995.0 1440 > th dose independent rect. 21 1
131 39.72 radiation 1.0 1440 < th dose independent rect. 21 1
151 39.72 temperature 10.0 1440 > th dose independent rect. 22 23
171 39.80 precipitation 0.1 720 < th dose independent rect. 3 16
172 39.80 humidity 50.0 30 > th dose independent rect. 21 23
173 39.80 precipitation 0.1 720 < th dose dependent rect. 3 16
175 39.91 precipitation 0.1 10 < th dose independent rect. 21 23
176 39.91 precipitation 0.1 10 < th dose dependent rect. 21 23
181 39.98 precipitation 0.1 720 < th dose independent rect. 7 8
183 39.98 precipitation 0.1 720 < th dose dependent rect. 7 8
190 40.12 atmosphere 995.0 720 > th dose independent rect. 7 8
191 40.15 atmosphere 995.0 720 > th dose independent rect. 3 16
194 40.19 atmosphere 1015.0 720 < th dose independent rect. 3 16
196 40.25 wind 9.0 720 < th dose independent rect. 19 8
198 40.26 wind 9.0 1440 < th dose independent rect. 21 1
199 40.26 precipitation 0.1 720 < th dose independent rect. 19 8
200 40.26 atmosphere 995.0 720 > th dose independent rect. 15 16
201 40.26 precipitation 0.1 720 < th dose dependent rect. 19 8
206 40.31 temperature 10.0 30 > th dose dependent rect. 21 23
209 40.33 humidity 80.0 14400 < th dose dependent rect. 4 5
214 40.36 temperature 10.0 720 > th dose independent rect. 19 8
215 40.36 temperature 30.0 720 < th dose independent rect. 19 8
216 40.36 humidity 50.0 720 > th dose independent rect. 19 8
217 40.36 atmosphere 995.0 720 > th dose independent rect. 19 8
218 40.36 radiation 1.0 720 < th dose independent rect. 19 8
223 40.36 temperature 10.0 720 > th dose independent rect. 3 16
224 40.36 atmosphere 995.0 720 > th dose independent rect. 17 16
226 40.36 radiation 1.0 720 < th dose dependent rect. 19 8
232 40.39 humidity 90.0 90 < th dose dependent rect. 2 5
234 40.40 temperature 10.0 720 > th dose independent rect. 7 8
235 40.40 atmosphere 1015.0 720 < th dose independent rect. 7 8
236 40.40 temperature 10.0 720 > th dose independent rect. 15 16
242 40.42 radiation 10.0 30 < th dose dependent rect. 21 23
246 40.45 atmosphere 1000.0 720 > th dose independent rect. 21 8
249 40.47 precipitation 0.1 1440 < th dose independent rect. 21 1
250 40.47 precipitation 0.1 1440 < th dose dependent rect. 21 1
255 40.51 atmosphere 995.0 720 > th dose independent rect. 9 8
256 40.51 radiation 1.0 720 < th dose independent rect. 21 8
259 40.53 temperature 15.0 90 > th dose independent rect. 8 11
260 40.53 radiation 10.0 720 < th dose dependent rect. 21 8
261 40.53 temperature 25.0 720 > th dose dependent rect. 24 9
262 40.54 humidity 70.0 14400 > th dose independent rect. 8 1
263 40.54 temperature 10.0 720 > th dose independent rect. 9 8
264 40.54 atmosphere 1015.0 720 < th dose independent rect. 9 8
265 40.54 precipitation 0.1 720 < th dose independent rect. 21 8
266 40.54 temperature 10.0 720 > th dose independent rect. 17 16
268 40.54 precipitation 0.1 720 < th dose dependent rect. 21 8
269 40.55 atmosphere 995.0 720 > th dose independent rect. 5 16
278 40.58 precipitation 0.1 720 < th dose independent rect. 9 8
279 40.58 wind 1.0 14400 < th dose dependent rect. 6 1
280 40.58 precipitation 0.1 720 < th dose dependent rect. 9 8
281 40.59 temperature 10.0 720 > th dose independent rect. 21 8
282 40.59 temperature 30.0 720 < th dose independent rect. 21 8
283 40.59 humidity 50.0 720 > th dose independent rect. 21 8
290 40.59 atmosphere 1000.0 720 > th dose independent rect. 21 12
291 40.59 temperature 10.0 720 > th dose independent rect. 5 16
295 40.60 atmosphere 1005.0 10 > th dose dependent rect. 2 2
296 40.60 humidity 80.0 14400 < th dose dependent rect. 24 10
306 40.63 wind 9.0 720 < th dose independent rect. 15 16
310 40.64 humidity 70.0 14400 > th dose independent rect. 7 3
311 40.64 humidity 70.0 14400 > th dose independent rect. 5 5
314 40.64 humidity 70.0 14400 > th dose independent rect. 1 9
315 40.64 humidity 70.0 14400 > th dose independent rect. 22 12
323 40.65 wind 1.0 14400 < th dose dependent rect. 4 3
326 40.66 humidity 70.0 14400 < th dose independent rect. 8 2
327 40.66 humidity 80.0 14400 < th dose independent rect. 7 6
332 40.67 temperature 10.0 720 > th dose dependent rect. 7 2
338 40.68 humidity 80.0 14400 > th dose independent rect. 7 6
360 40.70 humidity 70.0 14400 > th dose dependent rect. 8 1
370 40.72 atmosphere 1000.0 720 > th dose independent rect. 21 14
371 40.72 atmosphere 1010.0 10 < th dose independent rect. 21 23
375 40.73 humidity 90.0 90 < th dose independent rect. 2 2
401 40.74 wind 9.0 4320 < th dose independent rect. 21 15
409 40.75 atmosphere 1000.0 90 > th dose independent rect. 8 11
410 40.75 precipitation 0.1 720 < th dose independent rect. 17 16
414 40.75 humidity 70.0 14400 > th dose dependent rect. 7 6
416 40.75 precipitation 0.1 720 < th dose dependent rect. 17 16
417 40.76 wind 1.0 14400 < th dose independent rect. 4 3
428 40.77 humidity 80.0 14400 > th dose independent rect. 12 1
430 40.77 atmosphere 1000.0 720 > th dose independent rect. 7 2
431 40.77 wind 1.0 14400 > th dose independent rect. 4 3
440 40.78 humidity 80.0 14400 < th dose independent rect. 12 1
446 40.78 humidity 60.0 4320 > th dose dependent rect. 11 1
489 40.80 wind 9.0 720 < th dose independent rect. 21 8
495 40.80 wind 9.0 4320 > th dose independent rect. 22 14
504 40.81 temperature 25.0 720 > th dose independent rect. 3 6
506 40.81 wind 9.0 4320 > th dose independent rect. 4 8
507 40.81 wind 9.0 4320 < th dose independent rect. 2 10
508 40.81 atmosphere 1000.0 720 > th dose independent rect. 23 10
509 40.81 radiation 10.0 30 < th dose independent rect. 21 23
520 40.82 humidity 90.0 14400 < th dose independent rect. 7 1
521 40.82 radiation 1.0 720 > th dose independent rect. 7 2
528 40.82 wind 9.0 4320 > th dose independent rect. 1 11
532 40.82 wind 9.0 4320 < th dose independent rect. 23 13
540 40.83 humidity 90.0 14400 > th dose independent rect. 7 1
555 40.83 humidity 80.0 14400 > th dose dependent rect. 11 1
557 40.83 temperature 10.0 90 > th dose dependent rect. 8 11
579 40.85 humidity 90.0 14400 > th dose independent rect. 2 7
595 40.85 humidity 80.0 14400 > th dose independent rect. 23 15
602 40.85 humidity 90.0 14400 > th dose dependent rect. 19 6
606 40.85 atmosphere 995.0 30 > th dose dependent rect. 11 21
627 40.86 humidity 90.0 4320 < th dose dependent rect. 11 2
629 40.86 humidity 90.0 14400 > th dose dependent rect. 20 4
635 40.86 humidity 90.0 14400 > th dose dependent rect. 16 12
694 40.88 atmosphere 1015.0 720 < th dose independent rect. 5 16
696 40.88 humidity 90.0 30 < th dose dependent rect. 3 1
698 40.88 humidity 80.0 1440 > th dose dependent rect. 11 2
706 40.88 humidity 50.0 4320 > th dose dependent rect. 3 12
714 40.89 atmosphere 995.0 720 > th dose independent rect. 12 7
719 40.89 wind 1.0 90 > th dose independent rect. 8 11
720 40.89 wind 9.0 90 < th dose independent rect. 8 11
739 40.89 wind 7.0 4320 > th dose dependent rect. 4 8
742 40.89 humidity 60.0 4320 > th dose dependent rect. 3 10
748 40.89 humidity 50.0 4320 > th dose dependent rect. 23 16
756 40.90 wind 5.0 4320 < th dose independent rect. 20 5
759 40.90 wind 5.0 4320 > th dose independent rect. 19 7
760 40.90 wind 5.0 4320 < th dose independent rect. 19 7
769 40.90 precipitation 0.1 720 < th dose independent rect. 15 16
770 40.90 atmosphere 995.0 720 > th dose independent rect. 7 17
782 40.90 wind 1.0 14400 < th dose dependent rect. 2 6
787 40.90 temperature 25.0 30 > th dose dependent rect. 20 8
801 40.90 precipitation 0.1 720 < th dose dependent rect. 15 16
802 40.91 humidity 80.0 14400 > th dose independent sin 4 NA
803 40.91 humidity 80.0 14400 < th dose independent sin 4 NA
805 40.91 humidity 60.0 14400 < th dose independent rect. 11 1
808 40.91 wind 5.0 4320 > th dose independent rect. 20 5
825 40.91 humidity 90.0 14400 > th dose dependent rect. 20 1
864 40.91 humidity 90.0 4320 < th dose dependent rect. 23 16
878 40.92 precipitation 0.1 720 < th dose independent rect. 12 7
892 40.92 wind 7.0 90 < th dose independent rect. 19 13
899 40.92 humidity 90.0 14400 > th dose dependent sin 15 NA
913 40.92 precipitation 0.1 720 < th dose dependent rect. 12 7
927 40.92 humidity 90.0 4320 < th dose dependent rect. 3 12
941 40.93 wind 9.0 4320 > th dose independent sin 6 NA
977 40.93 radiation 1.0 43200 < th dose dependent rect. 3 1