BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0298200 Os06g0298200|AK072192
(407 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0298200 Similar to Oryza sativa (indica cultivar-group... 724 0.0
Os02g0724000 Zinc finger, B-box domain containing protein 521 e-148
Os03g0351100 Similar to CONSTANS-like protein CO9 (Fragment) 81 2e-15
Os08g0536300 Similar to Hd1 76 4e-14
Os07g0667300 Zinc finger, B-box domain containing protein 76 5e-14
Os09g0527900 Similar to Hd1-like protein 70 2e-12
>Os06g0298200 Similar to Oryza sativa (indica cultivar-group) Hd1
Length = 407
Score = 724 bits (1870), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 363/407 (89%), Positives = 363/407 (89%)
Query: 1 MGALCDFCGEQRSMVYCRSDAASLCLSCDRNVHSANALSRRHTRTLLCDRCASQPAMVRC 60
MGALCDFCGEQRSMVYCRSDAASLCLSCDRNVHSANALSRRHTRTLLCDRCASQPAMVRC
Sbjct: 1 MGALCDFCGEQRSMVYCRSDAASLCLSCDRNVHSANALSRRHTRTLLCDRCASQPAMVRC 60
Query: 61 LVENASLCQNCDWNGHSAGSSAAGHKRQTINCYSGCPSSSELSKIWTFVSDIPNVAPEPN 120
LVENASLCQNCDWNGHSAGSSAAGHKRQTINCYSGCPSSSELSKIWTFVSDIPNVAPEPN
Sbjct: 61 LVENASLCQNCDWNGHSAGSSAAGHKRQTINCYSGCPSSSELSKIWTFVSDIPNVAPEPN 120
Query: 121 CEQGISMMSISDSGVSNQDNAAGDSSLLDIASATLMSDLGTAGKPKSLIGSSSEAGVNLL 180
CEQGISMMSISDSGVSNQDNAAGDSSLLDIASATLMSDLGTAGKPKSLIGSSSEAGVNLL
Sbjct: 121 CEQGISMMSISDSGVSNQDNAAGDSSLLDIASATLMSDLGTAGKPKSLIGSSSEAGVNLL 180
Query: 181 PLATDQMAGSVDSTSAKVPYTADQDMFSKDSIYEDFCVDDVDLSFENYEELFGTSHIQTE 240
PLATDQMAGSVDSTSAKVPYTADQDMFSKDSIYEDFCVDDVDLSFENYEELFGTSHIQTE
Sbjct: 181 PLATDQMAGSVDSTSAKVPYTADQDMFSKDSIYEDFCVDDVDLSFENYEELFGTSHIQTE 240
Query: 241 QLFDDAGIDSYFESKEIPSGNSDEPKLMQPVTSNAVSADSGMSIPGAKGDSSLCIPVRQA 300
QLFDDAGIDSYFESKEIPSGNSDEPKLMQPVTSNAVSADSGMSIPGAKGDSSLCIPVRQA
Sbjct: 241 QLFDDAGIDSYFESKEIPSGNSDEPKLMQPVTSNAVSADSGMSIPGAKGDSSLCIPVRQA 300
Query: 301 RSSISLSFSGLTGESSAGDYQDCGVSPVLLMXXXXXXXXXXXXSFAGATRDDAITXXXXX 360
RSSISLSFSGLTGESSAGDYQDCGVSPVLLM SFAGATRDDAIT
Sbjct: 301 RSSISLSFSGLTGESSAGDYQDCGVSPVLLMGEPPWHPPGPEGSFAGATRDDAITRYKEK 360
Query: 361 XXXXXXXXXXXYXXXXXXXXXXXXXXXXFVKAGEAYDYDPLCETRSY 407
Y FVKAGEAYDYDPLCETRSY
Sbjct: 361 KKRRKFDKKIRYASRKARADVRKRVKGRFVKAGEAYDYDPLCETRSY 407
>Os02g0724000 Zinc finger, B-box domain containing protein
Length = 407
Score = 521 bits (1343), Expect = e-148, Method: Compositional matrix adjust.
Identities = 269/408 (65%), Positives = 299/408 (73%), Gaps = 2/408 (0%)
Query: 1 MGALCDFCGEQRSMVYCRSDAASLCLSCDRNVHSANALSRRHTRTLLCDRCASQPAMVRC 60
M ALCDFC EQRSMVYCRSDAASLCLSCDRNVHSANALSRRHTRTLLCDRC QPA VRC
Sbjct: 1 MDALCDFCREQRSMVYCRSDAASLCLSCDRNVHSANALSRRHTRTLLCDRCVGQPAAVRC 60
Query: 61 LVENASLCQNCDWNGHSAGSSAAGHKRQTINCYSGCPSSSELSKIWTFVSDIPNVAPEPN 120
L EN SLCQNCDWNGH A SSAAGHKRQTINCYSGCPSS+ELS+IW+F DIP VA EPN
Sbjct: 61 LEENTSLCQNCDWNGHGAASSAAGHKRQTINCYSGCPSSAELSRIWSFSMDIPTVAAEPN 120
Query: 121 CEQGISMMSISDSGVSNQDNAAGDSSLLDIASATLMSDLGTAGKPKSLIGSSSEAGVNLL 180
CE+GI+MMSI+D+ V+N A D LLDIAS LMSDL T K K LIGSSS G+NLL
Sbjct: 121 CEEGINMMSINDNDVNNHCGAPEDGRLLDIASTALMSDLPTGDKFKPLIGSSSGDGMNLL 180
Query: 181 PLATDQMAGSVDSTSAKVPYTADQDMFSKDSIYEDFCVDDVDLSFENYEELFGTSHIQTE 240
PL +DQ A V ST+ K P D+DMF+ S+Y DFCVDD DL+FENYEELFGTSH+QTE
Sbjct: 181 PLNSDQPAEPV-STTPKAPCVTDKDMFNDGSVYGDFCVDDADLTFENYEELFGTSHVQTE 239
Query: 241 QLFDDAGIDSYFESKEIPSGNSDE-PKLMQPVTSNAVSADSGMSIPGAKGDSSLCIPVRQ 299
QLFDDAGIDSYFE K++P+ S+E PK +QP SN S DSGMS P A+ DSS CIP RQ
Sbjct: 240 QLFDDAGIDSYFEMKDVPADESNEQPKPVQPECSNVASVDSGMSNPAARADSSHCIPGRQ 299
Query: 300 ARSSISLSFSGLTGESSAGDYQDCGVSPVLLMXXXXXXXXXXXXSFAGATRDDAITXXXX 359
A S+ISLSFSGLTGESSAG +QDCGVS ++LM S AG +RD+A+T
Sbjct: 300 AISNISLSFSGLTGESSAGYFQDCGVSSMILMGEPPWHPPGPESSSAGGSRDNALTRYKE 359
Query: 360 XXXXXXXXXXXXYXXXXXXXXXXXXXXXXFVKAGEAYDYDPLCETRSY 407
Y FVKAGEAYDYDPL +TRSY
Sbjct: 360 KKKRRKFDKKIRYASRKARADVRKRVKGRFVKAGEAYDYDPLSQTRSY 407
>Os03g0351100 Similar to CONSTANS-like protein CO9 (Fragment)
Length = 403
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/107 (44%), Positives = 67/107 (62%), Gaps = 5/107 (4%)
Query: 3 ALCDFCGEQRSMVYCRSDAASLCLSCDRNVHSANALSRRHTRTLLCDRCASQPAMVRCLV 62
A CD+CG+ ++VYCR+DAA LCL CDR+VH AN + RH R LC CA+ A+ R
Sbjct: 36 AGCDYCGDAAAVVYCRADAARLCLPCDRHVHGANGVCSRHARAPLCAACAAAGAVFR-RG 94
Query: 63 ENASLCQNCDWNGHSAGS----SAAGHKRQTINCYSGCPSSSELSKI 105
LC NCD++ H G +A H R T++ Y+GCPS+ +L+ +
Sbjct: 95 AGGFLCSNCDFSRHRHGGERDPAAPLHDRSTVHPYTGCPSALDLAAL 141
>Os08g0536300 Similar to Hd1
Length = 488
Score = 76.3 bits (186), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 48/111 (43%), Positives = 69/111 (62%), Gaps = 7/111 (6%)
Query: 5 CDFCGEQRSMVYCRSDAASLCLSCDRNVHSANALSRRHTRTLLCDRCASQPAMVRCLVEN 64
CD+CGE + ++CR+DAA LC++CDR+VH+ANALSR+H R LC CA++PA R +
Sbjct: 18 CDYCGEAAAALHCRADAARLCVACDRHVHAANALSRKHVRAPLCAACAARPAAARVASAS 77
Query: 65 AS--LCQNCDWNGHSAGSSAAGHKRQTINCYSGCPSSSELSKIWTFVSDIP 113
A LC +CD G R + +SGCP+++EL+ W D+P
Sbjct: 78 APAFLCADCD---TGCGGDDGAALRVPVEGFSGCPAAAELAASWGL--DLP 123
>Os07g0667300 Zinc finger, B-box domain containing protein
Length = 380
Score = 75.9 bits (185), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 44/112 (39%), Positives = 59/112 (52%), Gaps = 8/112 (7%)
Query: 5 CDFCGEQRSMVYCRSDAASLCLSCDRNVHSANALSRRHTRTLLCDRCASQPAMVRCLVEN 64
CDFCG ++VYCR+D+A LCL CDR+VH+AN +S RH R LC C + +
Sbjct: 24 CDFCGGLPAVVYCRADSARLCLPCDRHVHAANTVSTRHARAPLCSACRAA-PAAAFHRGD 82
Query: 65 ASLCQNCDWNGHSAGSSAAG-------HKRQTINCYSGCPSSSELSKIWTFV 109
LC +CD++ S G R + Y+GCPS EL+ I V
Sbjct: 83 GFLCSSCDFDERLRRGSIGGGGDELPLDDRAAVEGYTGCPSIGELAAILGVV 134
>Os09g0527900 Similar to Hd1-like protein
Length = 211
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 47/92 (51%), Gaps = 8/92 (8%)
Query: 1 MGALCDFCGEQRSMVYCRSDAASLCLSCDRNVHSANALSRRHTRTLL--------CDRCA 52
M +CD C ++++C +D A+LC SCD VH N L+RRH R L CD C
Sbjct: 1 MRTICDVCESAPAVLFCVADEAALCRSCDEKVHMCNKLARRHVRVGLADPNKVQRCDICE 60
Query: 53 SQPAMVRCLVENASLCQNCDWNGHSAGSSAAG 84
+ PA C ++ SLC +CD H G G
Sbjct: 61 NAPAFFYCEIDGTSLCLSCDMTVHVGGKRTHG 92
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.314 0.128 0.379
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,174,988
Number of extensions: 475393
Number of successful extensions: 959
Number of sequences better than 1.0e-10: 16
Number of HSP's gapped: 932
Number of HSP's successfully gapped: 16
Length of query: 407
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 304
Effective length of database: 11,657,759
Effective search space: 3543958736
Effective search space used: 3543958736
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 157 (65.1 bits)