Os07g0667300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, B-box domain containing protein.
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Os07g0667300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, B-box domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 133.1 | 0.542 | 11.8 | 0.443 | 0.882 | 1.56 | 0.493 | -0.642 | -0.142 | 0.591 | 73.05 | 252 | -- | -- |
| 133.12 | 0.537 | 11.8 | 0.471 | 0.923 | 1.51 | 0.619 | -- | -0.148 | 0.747 | 75 | 250 | -- | -- |
| 133.91 | 0.539 | 11.8 | 0.424 | 0.896 | 1.57 | -- | -0.802 | -0.145 | 0.71 | 74.39 | 255 | -- | -- |
| 134.6 | 0.54 | 11.8 | 0.459 | 0.907 | 1.48 | -- | -- | -0.15 | 0.679 | 74.89 | 250 | -- | -- |
| 150.04 | 0.57 | 11.8 | 0.393 | -- | 1.41 | -- | 0.217 | -0.136 | -- | 79.2 | 943 | -- | -- |
| 162.6 | 0.598 | 11.8 | 0.614 | 0.75 | -- | 0.653 | -- | -0.204 | 22.2 | -- | -- | -- | -- |
| 164.29 | 0.6 | 11.8 | 0.588 | 0.746 | -- | -- | -- | -0.206 | 22.2 | -- | -- | -- | -- |
| 150.03 | 0.57 | 11.8 | 0.384 | -- | 1.46 | -- | -- | -0.134 | -- | 79 | 949 | -- | -- |
| 139.73 | 0.551 | 11.8 | -- | 0.887 | 1.52 | -- | -- | -0.191 | 0.88 | 75 | 271 | -- | -- |
| 198.06 | 0.658 | 11.8 | 0.598 | -- | -- | -- | -- | -0.204 | -- | -- | -- | -- | -- |
| 173.39 | 0.616 | 11.9 | -- | 0.749 | -- | -- | -- | -0.271 | 22.3 | -- | -- | -- | -- |
| 153.72 | 0.577 | 11.8 | -- | -- | 1.54 | -- | -- | -0.171 | -- | 78.22 | 969 | -- | -- |
| 207.51 | 0.672 | 11.8 | -- | -- | -- | -- | -- | -0.271 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 126.46 | temperature | 15 | 90 | > th | dose dependent | rect. | 15 | 15 |
| 2 | 126.53 | temperature | 15 | 270 | > th | dose dependent | rect. | 13 | 17 |
| 9 | 127.87 | humidity | 60 | 270 | > th | dose independent | rect. | 6 | 19 |
| 20 | 128.43 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 15 |
| 34 | 129.14 | humidity | 60 | 270 | > th | dose independent | rect. | 15 | 22 |
| 71 | 130.48 | humidity | 50 | 270 | > th | dose dependent | rect. | 7 | 17 |
| 80 | 130.64 | humidity | 70 | 90 | > th | dose independent | rect. | 10 | 17 |
| 148 | 132.06 | radiation | 20 | 1440 | < th | dose independent | rect. | 16 | 16 |
| 170 | 132.48 | humidity | 50 | 4320 | > th | dose independent | rect. | 13 | 4 |
| 183 | 132.81 | radiation | 20 | 1440 | > th | dose independent | rect. | 16 | 16 |
| 192 | 133.04 | temperature | 30 | 270 | < th | dose independent | rect. | 15 | 10 |
| 194 | 133.07 | temperature | 15 | 270 | > th | dose dependent | rect. | 12 | 9 |
| 198 | 133.11 | humidity | 80 | 270 | < th | dose dependent | rect. | 6 | 13 |
| 199 | 133.11 | humidity | 80 | 270 | < th | dose dependent | rect. | 11 | 23 |
| 205 | 133.16 | humidity | 50 | 30 | > th | dose dependent | rect. | 10 | 16 |
| 208 | 133.19 | humidity | 80 | 270 | < th | dose dependent | sin | 21 | NA |
| 215 | 133.30 | radiation | 20 | 1440 | > th | dose dependent | rect. | 16 | 16 |
| 256 | 133.65 | temperature | 20 | 270 | > th | dose dependent | rect. | 12 | 7 |
| 261 | 133.66 | humidity | 70 | 1440 | < th | dose dependent | rect. | 16 | 20 |
| 274 | 133.75 | humidity | 60 | 1440 | > th | dose independent | rect. | 16 | 22 |
| 280 | 133.79 | humidity | 50 | 4320 | > th | dose independent | rect. | 13 | 23 |
| 286 | 133.82 | humidity | 70 | 270 | < th | dose dependent | rect. | 13 | 23 |
| 297 | 133.89 | humidity | 60 | 1440 | < th | dose independent | rect. | 16 | 22 |
| 301 | 133.92 | humidity | 50 | 4320 | > th | dose independent | rect. | 8 | 9 |
| 302 | 133.92 | humidity | 50 | 4320 | > th | dose independent | rect. | 19 | 22 |
| 311 | 133.95 | humidity | 50 | 4320 | > th | dose independent | rect. | 10 | 7 |
| 323 | 134.01 | humidity | 50 | 4320 | > th | dose independent | rect. | 24 | 17 |
| 335 | 134.07 | humidity | 60 | 270 | > th | dose independent | rect. | 16 | 9 |
| 354 | 134.17 | humidity | 50 | 4320 | > th | dose independent | rect. | 2 | 15 |
| 364 | 134.21 | humidity | 50 | 270 | > th | dose dependent | rect. | 6 | 8 |
| 370 | 134.24 | humidity | 50 | 4320 | > th | dose independent | rect. | 13 | 12 |
| 373 | 134.24 | humidity | 80 | 270 | < th | dose dependent | rect. | 11 | 8 |
| 375 | 134.25 | radiation | 30 | 1440 | < th | dose independent | rect. | 19 | 13 |
| 378 | 134.26 | humidity | 50 | 4320 | > th | dose independent | rect. | 13 | 14 |
| 379 | 134.26 | humidity | 70 | 270 | < th | dose dependent | no | NA | NA |
| 498 | 134.35 | humidity | 50 | 4320 | > th | dose independent | rect. | 13 | 8 |
| 509 | 134.37 | humidity | 60 | 1440 | > th | dose independent | rect. | 9 | 16 |
| 520 | 134.38 | humidity | 70 | 270 | < th | dose dependent | rect. | 9 | 23 |
| 522 | 134.40 | humidity | 60 | 1440 | > th | dose independent | rect. | 9 | 12 |
| 614 | 134.48 | humidity | 60 | 1440 | > th | dose independent | no | NA | NA |
| 663 | 134.51 | temperature | 20 | 30 | > th | dose dependent | sin | 14 | NA |
| 667 | 134.52 | humidity | 50 | 4320 | > th | dose independent | sin | 17 | NA |
| 675 | 134.52 | radiation | 10 | 270 | < th | dose dependent | rect. | 7 | 18 |
| 692 | 134.57 | humidity | 60 | 1440 | > th | dose independent | sin | 23 | NA |
| 726 | 134.64 | humidity | 60 | 1440 | < th | dose independent | rect. | 9 | 10 |
| 727 | 134.64 | temperature | 30 | 270 | < th | dose independent | rect. | 6 | 19 |
| 729 | 134.64 | humidity | 60 | 1440 | < th | dose independent | rect. | 11 | 23 |
| 812 | 134.75 | radiation | 30 | 1440 | > th | dose independent | rect. | 7 | 1 |
| 834 | 134.77 | humidity | 60 | 1440 | < th | dose independent | no | NA | NA |
| 915 | 134.77 | temperature | 10 | 90 | > th | dose dependent | sin | 15 | NA |
| 956 | 134.83 | humidity | 60 | 1440 | < th | dose independent | sin | 22 | NA |