BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0667300 Os07g0667300|AK120101
(380 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0667300 Zinc finger, B-box domain containing protein 691 0.0
Os03g0351100 Similar to CONSTANS-like protein CO9 (Fragment) 282 3e-76
Os08g0536300 Similar to Hd1 84 3e-16
Os06g0298200 Similar to Oryza sativa (indica cultivar-group... 68 1e-11
>Os07g0667300 Zinc finger, B-box domain containing protein
Length = 380
Score = 691 bits (1784), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/380 (92%), Positives = 353/380 (92%)
Query: 1 MARDDDPAKKLAVDGGVAAAARCCDFCGGLPAVVYCRADSARLCLPCDRHVHAANTVSTR 60
MARDDDPAKKLAVDGGVAAAARCCDFCGGLPAVVYCRADSARLCLPCDRHVHAANTVSTR
Sbjct: 1 MARDDDPAKKLAVDGGVAAAARCCDFCGGLPAVVYCRADSARLCLPCDRHVHAANTVSTR 60
Query: 61 HXXXXXXXXXXXXXXXXFHRGDGFLCSSCDFDERLRRGSIGGGGDELPLDDRAAVEGYTG 120
H FHRGDGFLCSSCDFDERLRRGSIGGGGDELPLDDRAAVEGYTG
Sbjct: 61 HARAPLCSACRAAPAAAFHRGDGFLCSSCDFDERLRRGSIGGGGDELPLDDRAAVEGYTG 120
Query: 121 CPSIGELAAILGVVGGDSDKPADDGWWSASWEEEAPQVLSLDDIIVPTTSCHGLRPLLTP 180
CPSIGELAAILGVVGGDSDKPADDGWWSASWEEEAPQVLSLDDIIVPTTSCHGLRPLLTP
Sbjct: 121 CPSIGELAAILGVVGGDSDKPADDGWWSASWEEEAPQVLSLDDIIVPTTSCHGLRPLLTP 180
Query: 181 PSPENQSSPDNGELDGEVVRQLGELARSEAAAQATFVAGDQLASWASPEFTSGHGDFGIE 240
PSPENQSSPDNGELDGEVVRQLGELARSEAAAQATFVAGDQLASWASPEFTSGHGDFGIE
Sbjct: 181 PSPENQSSPDNGELDGEVVRQLGELARSEAAAQATFVAGDQLASWASPEFTSGHGDFGIE 240
Query: 241 AASTTVPSCENETWIMSTDCTDPTDASKTDIARXXXXXXXXXXXCLSSLVEISEICRSMS 300
AASTTVPSCENETWIMSTDCTDPTDASKTDIAR CLSSLVEISEICRSMS
Sbjct: 241 AASTTVPSCENETWIMSTDCTDPTDASKTDIAREEAPASSSAEPCLSSLVEISEICRSMS 300
Query: 301 YSGSGIDNGGHDPSTLAIMPTQALPKKGVYDIAYPDRGTVISRYKEKRKNRRFDKQIRYE 360
YSGSGIDNGGHDPSTLAIMPTQALPKKGVYDIAYPDRGTVISRYKEKRKNRRFDKQIRYE
Sbjct: 301 YSGSGIDNGGHDPSTLAIMPTQALPKKGVYDIAYPDRGTVISRYKEKRKNRRFDKQIRYE 360
Query: 361 SRKARADGRLRIKGRFAKSN 380
SRKARADGRLRIKGRFAKSN
Sbjct: 361 SRKARADGRLRIKGRFAKSN 380
>Os03g0351100 Similar to CONSTANS-like protein CO9 (Fragment)
Length = 403
Score = 282 bits (722), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 184/384 (47%), Positives = 220/384 (57%), Gaps = 31/384 (8%)
Query: 16 GVAAAARCCDFCGGLPAVVYCRADSARLCLPCDRHVHAANTVSTRHXXXXXXXXXXXXXX 75
G AA CD+CG AVVYCRAD+ARLCLPCDRHVH AN V +RH
Sbjct: 30 GSKKAAAGCDYCGDAAAVVYCRADAARLCLPCDRHVHGANGVCSRHARAPLCAACAAAGA 89
Query: 76 XXFHRG-DGFLCSSCDFDERLRRGSIGGGGDELPLDDRAAVEGYTGCPSIGELAAILGVV 134
F RG GFLCS+CDF R R G G PL DR+ V YTGCPS +LAA+LG+
Sbjct: 90 V-FRRGAGGFLCSNCDFS-RHRHG--GERDPAAPLHDRSTVHPYTGCPSALDLAALLGIS 145
Query: 135 GGDSDKPADDGWWSAS------WEEEAPQVLSLDDIIVPTTSCHGLRPLLTPPSPENQSS 188
D A WEE PQVLSL+D+IVPTTSCHG PLLTP SP+ Q+S
Sbjct: 146 YSDKAAAATAAAGGDDGGWWAIWEE--PQVLSLEDLIVPTTSCHGFEPLLTPSSPKIQNS 203
Query: 189 PDNGELDGEVVRQLGELARSEAAAQATFV------AGD-QLASW-ASPEFTSGHGDFGI- 239
PD G+++ EV+RQL ELA S+ + AGD QL SW + + +GHG+FG
Sbjct: 204 PD-GKVNEEVIRQLTELANSDGGGAQIWAHREAAQAGDHQLPSWGTTTQHNTGHGNFGTA 262
Query: 240 ---EAASTTVPSCENETWIMSTDCTDPTDASKTDIARXXXXXXXXXXXCLSSLVEISEIC 296
E A+ P EN W S D D K + C+SS V++SE+C
Sbjct: 263 NSNEVATMPTPGYENGGWDNS-DYPALNDPCKVEFT-YEQPPASSAEACISSFVQMSELC 320
Query: 297 RSMSYSGSGIDNGGHDPSTLAIMPTQALPKKGVYDIAYPDRGTVISRYKEKRKNRRFDKQ 356
SMS +GS ++ H + P Q LPK + + PDR VISRYKEKRK RRFD+Q
Sbjct: 321 PSMS-NGSSMEET-HQTNPGNGTPMQVLPKMPEF-VPCPDRNLVISRYKEKRKTRRFDRQ 377
Query: 357 IRYESRKARADGRLRIKGRFAKSN 380
+RYESRKARAD RLRIKGRFAK N
Sbjct: 378 VRYESRKARADSRLRIKGRFAKVN 401
>Os08g0536300 Similar to Hd1
Length = 488
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 69/196 (35%), Positives = 92/196 (46%), Gaps = 32/196 (16%)
Query: 24 CDFCGGLPAVVYCRADSARLCLPCDRHVHAANTVSTRHXXX---XXXXXXXXXXXXXFHR 80
CD+CG A ++CRAD+ARLC+ CDRHVHAAN +S +H
Sbjct: 18 CDYCGEAAAALHCRADAARLCVACDRHVHAANALSRKHVRAPLCAACAARPAAARVASAS 77
Query: 81 GDGFLCSSCDFDERLRRGSIGGGGDELPLDDRAAVEGYTGCPSIGELAAILGV----VGG 136
FLC+ CD G GGD+ R VEG++GCP+ ELAA G+ G
Sbjct: 78 APAFLCADCD---------TGCGGDDGAA-LRVPVEGFSGCPAAAELAASWGLDLPGGCG 127
Query: 137 DSDKPADDGWWSASWEEEAPQVLSLDDIIVPTTSCHGLRPLLTPPSPENQSSPDNG-ELD 195
++ ADD ++SA +L++D + LR L P P G L
Sbjct: 128 GEEEEADDAFFSAL----DYSMLAVDPV---------LRDLYVPCDPPEVVVAGGGRRLK 174
Query: 196 GEVV-RQLGELARSEA 210
GE + QL E+AR EA
Sbjct: 175 GEALGHQLAEMARREA 190
Score = 68.6 bits (166), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 29/45 (64%), Positives = 37/45 (82%)
Query: 336 DRGTVISRYKEKRKNRRFDKQIRYESRKARADGRLRIKGRFAKSN 380
+R + + RY+EK+KNRR++K IRYESRK RAD R R+KGRF KSN
Sbjct: 434 NRDSAMQRYREKKKNRRYEKHIRYESRKLRADTRKRVKGRFVKSN 478
>Os06g0298200 Similar to Oryza sativa (indica cultivar-group) Hd1
Length = 407
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 54/112 (48%), Gaps = 8/112 (7%)
Query: 24 CDFCGGLPAVVYCRADSARLCLPCDRHVHAANTVSTRHXXXXXXXX-XXXXXXXXFHRGD 82
CDFCG ++VYCR+D+A LCL CDR+VH+AN +S RH +
Sbjct: 5 CDFCGEQRSMVYCRSDAASLCLSCDRNVHSANALSRRHTRTLLCDRCASQPAMVRCLVEN 64
Query: 83 GFLCSSCDFDERLRRGSIGGGGDELPLDDRAAVEGYTGCPSIGELAAILGVV 134
LC +CD++ S G R + Y+GCPS EL+ I V
Sbjct: 65 ASLCQNCDWNGHSAGSSAAG-------HKRQTINCYSGCPSSSELSKIWTFV 109
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.134 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 14,848,024
Number of extensions: 704186
Number of successful extensions: 2333
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 2323
Number of HSP's successfully gapped: 6
Length of query: 380
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 277
Effective length of database: 11,657,759
Effective search space: 3229199243
Effective search space used: 3229199243
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 157 (65.1 bits)