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Os06g0298200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Oryza sativa (indica cultivar-group) Hd1.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10 (0.0346) R2 : 0.964
β1 : -- (--) R2dD : -- R2D : --
β2 : 2.77 (0.192) R2dC : 0.0914 R2C : 0.472
β3 : -6.82 (0.203) R2dE : 0.492 R2E : 0.873
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0202 (0.0722) R2dN8 : 1.07e-06 R2N8 : -0.000194
σ : 0.637
deviance : 187.2
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_____
C
peak time of C : 22.6
E
wheather : temperature
threshold : 3.904
memory length : 115
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 4.93
open length of G : 9.68

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
182.02 0.634 10.1 -0.569 3.46 -6.38 -0.587 -2.58 -0.0598 22.6 8.696 89 5.02 9.91
173.11 0.613 10.1 -0.545 2.72 -6.91 1.01 -- -0.0993 22.6 4.438 114 4.97 9.63
174.38 0.615 10.1 -0.522 3.36 -6.36 -- -1.64 -0.032 22.5 6.763 100 5.04 9.73
178.33 0.622 10.1 -0.607 2.82 -6.68 -- -- -0.1 22.6 2.834 114 4.97 9.66
254.72 0.743 9.96 -0.882 -- -8.62 -- -3.04 0.0915 -- -1.771 125 4.68 10
586.64 1.14 10.3 -0.761 8.62 -- 2.15 -- -0.463 22.9 -- -- -- --
606.07 1.15 10.3 -0.848 8.61 -- -- -- -0.47 22.9 -- -- -- --
197.76 0.655 10 -0.6 -- -8.88 -- -- -0.224 -- -7.621 237 3.75 9.73
187.2 0.637 10 -- 2.77 -6.82 -- -- -0.0202 22.6 3.904 115 4.93 9.68
5203.05 3.37 10.1 -0.664 -- -- -- -- -0.411 -- -- -- -- --
625.04 1.17 10.3 -- 8.6 -- -- -- -0.376 22.9 -- -- -- --
205.48 0.668 9.99 -- -- -8.96 -- -- -0.0615 -- -5.118 234 3.78 9.73
5214.67 3.37 10.1 -- -- -- -- -- -0.337 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 190.39 temperature 10.0 90 > th dose dependent rect. 5 10
4 228.23 temperature 10.0 10 > th dose dependent rect. 6 9
9 241.03 radiation 1.0 90 > th dose independent rect. 4 11
27 262.57 temperature 20.0 90 > th dose independent rect. 5 10
28 263.36 precipitation 0.1 90 < th dose independent rect. 5 10
29 263.36 precipitation 0.1 90 < th dose dependent rect. 5 10
31 268.65 radiation 40.0 90 < th dose independent rect. 15 14
32 269.66 temperature 10.0 90 > th dose independent rect. 5 10
33 269.66 atmosphere 1015.0 90 < th dose independent rect. 5 10
34 269.66 temperature 10.0 90 > th dose independent rect. 15 14
35 271.02 radiation 40.0 10 < th dose dependent rect. 14 16
36 272.22 atmosphere 995.0 90 > th dose independent rect. 5 10
38 273.02 wind 9.0 90 < th dose independent rect. 15 14
40 273.40 wind 9.0 90 < th dose independent rect. 5 10
52 279.01 temperature 10.0 270 > th dose independent rect. 13 15
54 280.62 wind 9.0 270 < th dose independent rect. 13 15
84 289.47 temperature 10.0 270 > th dose independent rect. 17 7
85 289.47 radiation 20.0 270 < th dose independent rect. 17 7
88 289.47 temperature 10.0 270 > th dose independent rect. 24 17
89 289.50 atmosphere 1015.0 270 < th dose independent rect. 24 17
90 290.20 wind 9.0 270 < th dose independent rect. 24 17
91 290.22 wind 9.0 270 < th dose independent rect. 17 7
92 290.31 humidity 50.0 270 > th dose independent rect. 4 9
93 291.64 radiation 40.0 270 < th dose dependent rect. 17 7
94 292.58 radiation 10.0 10 < th dose dependent rect. 2 17
101 293.47 humidity 50.0 270 > th dose independent rect. 17 7
103 294.00 temperature 20.0 10 > th dose independent rect. 6 9
104 294.02 atmosphere 995.0 90 > th dose independent rect. 15 14
105 294.36 radiation 30.0 10 < th dose independent rect. 14 16
109 295.61 precipitation 0.1 270 < th dose independent rect. 17 7
110 295.61 precipitation 0.1 270 < th dose dependent rect. 17 7
112 295.89 precipitation 0.1 90 < th dose independent rect. 15 14
113 295.89 precipitation 0.1 90 < th dose dependent rect. 15 14
117 296.82 atmosphere 995.0 270 > th dose independent rect. 24 17
122 298.13 radiation 1.0 10 > th dose independent rect. 6 9
125 298.56 atmosphere 995.0 270 > th dose independent rect. 17 7
126 298.96 precipitation 0.1 270 < th dose independent rect. 13 15
127 298.96 precipitation 0.1 270 < th dose dependent rect. 13 15
131 299.31 precipitation 0.1 270 < th dose independent rect. 24 17
132 299.31 precipitation 0.1 270 < th dose dependent rect. 24 17
134 299.53 precipitation 0.1 10 < th dose independent rect. 6 9
135 299.53 precipitation 0.1 10 < th dose dependent rect. 6 9
139 300.27 temperature 10.0 10 > th dose independent rect. 6 9
141 300.27 atmosphere 995.0 10 > th dose independent rect. 6 9
142 300.27 atmosphere 1015.0 10 < th dose independent rect. 6 9
143 300.27 temperature 10.0 10 > th dose independent rect. 15 15
154 302.14 wind 9.0 10 < th dose independent rect. 6 9
156 302.15 temperature 10.0 270 > th dose independent rect. 18 5
157 302.15 humidity 50.0 270 > th dose independent rect. 18 5
158 302.15 radiation 10.0 270 < th dose independent rect. 18 5
162 302.15 temperature 10.0 270 > th dose independent rect. 23 19
163 302.36 radiation 40.0 270 < th dose dependent rect. 18 5
166 302.49 wind 9.0 270 < th dose independent rect. 18 5
170 303.07 wind 9.0 270 < th dose independent rect. 23 19
174 303.25 wind 9.0 10 < th dose independent rect. 15 15
181 303.80 atmosphere 995.0 270 > th dose independent rect. 18 5
196 306.05 wind 1.0 270 > th dose independent rect. 17 7
200 306.60 atmosphere 1015.0 270 < th dose independent rect. 23 19
201 306.64 temperature 10.0 1440 > th dose independent rect. 7 9
204 306.64 temperature 10.0 1440 > th dose independent rect. 16 15
208 307.13 precipitation 0.1 270 < th dose independent rect. 18 5
209 307.13 precipitation 0.1 270 < th dose dependent rect. 18 5
248 310.95 wind 1.0 270 > th dose independent rect. 18 5
274 313.08 precipitation 0.1 270 < th dose independent rect. 23 19
275 313.08 precipitation 0.1 270 < th dose dependent rect. 23 19
279 313.20 radiation 1.0 90 < th dose independent rect. 1 17
282 313.46 atmosphere 995.0 270 > th dose independent rect. 13 15
289 313.94 radiation 10.0 10 < th dose dependent sin 2 NA
296 314.74 atmosphere 995.0 270 > th dose independent rect. 23 19
303 315.61 temperature 30.0 270 < th dose independent rect. 18 5
307 315.87 atmosphere 995.0 10 > th dose independent rect. 15 15
309 316.50 temperature 30.0 10 < th dose dependent rect. 2 17
329 319.00 radiation 20.0 43200 < th dose dependent rect. 20 7
411 324.79 wind 1.0 270 > th dose independent rect. 24 17
414 325.04 radiation 1.0 90 < th dose independent sin 3 NA
418 325.26 radiation 1.0 90 > th dose independent sin 3 NA
432 326.74 atmosphere 1015.0 270 < th dose independent rect. 18 5
437 327.61 temperature 10.0 10 > th dose dependent rect. 20 19
452 328.70 radiation 1.0 270 < th dose independent rect. 23 17
476 329.55 atmosphere 1015.0 90 < th dose independent rect. 15 14
479 329.70 humidity 90.0 10 < th dose independent rect. 6 9
487 330.18 wind 1.0 10 > th dose independent rect. 6 9
488 330.22 temperature 10.0 10 > th dose dependent rect. 6 19
528 331.10 humidity 50.0 10 > th dose independent rect. 6 9
540 332.44 radiation 1.0 90 < th dose independent rect. 1 6
541 332.49 wind 9.0 270 < th dose dependent rect. 18 5
548 333.06 radiation 1.0 90 < th dose independent rect. 1 11
552 333.44 atmosphere 1015.0 270 < th dose independent rect. 17 7
583 334.65 humidity 50.0 10 > th dose independent rect. 15 15
611 335.28 humidity 50.0 90 > th dose dependent rect. 19 6
615 335.44 atmosphere 1015.0 10 < th dose independent rect. 15 15
655 337.22 radiation 1.0 90 < th dose dependent rect. 1 11
669 337.74 radiation 1.0 270 < th dose independent rect. 23 8
696 339.38 wind 1.0 270 > th dose independent rect. 13 15
714 340.45 temperature 10.0 270 > th dose dependent rect. 18 5
754 342.48 temperature 10.0 10 > th dose independent rect. 19 7
755 342.48 temperature 30.0 10 < th dose independent rect. 19 7
756 342.48 humidity 50.0 10 > th dose independent rect. 19 7
758 342.48 atmosphere 995.0 10 > th dose independent rect. 19 7
759 342.48 radiation 1.0 10 < th dose independent rect. 19 7
764 342.48 temperature 10.0 10 > th dose independent rect. 2 17
766 342.48 atmosphere 1015.0 10 < th dose independent rect. 2 17
767 342.48 radiation 1.0 10 < th dose dependent rect. 19 7
775 342.77 wind 9.0 10 < th dose independent rect. 19 7
803 343.36 humidity 50.0 10 > th dose dependent rect. 19 7
807 343.44 precipitation 0.1 10 < th dose independent rect. 19 7
808 343.44 precipitation 0.1 10 < th dose dependent rect. 19 7
848 344.89 atmosphere 1015.0 270 < th dose independent rect. 19 3
873 345.48 temperature 10.0 270 > th dose independent rect. 24 4
874 345.48 temperature 30.0 270 < th dose independent rect. 24 4
875 345.48 humidity 50.0 270 > th dose independent rect. 24 4
878 345.48 atmosphere 995.0 270 > th dose independent rect. 24 4
884 345.48 temperature 10.0 270 > th dose independent rect. 4 20
891 345.50 wind 9.0 270 < th dose independent rect. 24 4
892 345.50 atmosphere 1015.0 270 < th dose independent rect. 24 4
919 346.72 radiation 10.0 10 < th dose dependent rect. 2 4
926 346.91 radiation 40.0 90 < th dose independent rect. 1 18
948 347.57 temperature 10.0 270 > th dose independent rect. 23 6
949 347.57 temperature 30.0 270 < th dose independent rect. 23 6
950 347.57 humidity 50.0 270 > th dose independent rect. 23 6
953 347.57 atmosphere 995.0 270 > th dose independent rect. 23 6
954 347.57 radiation 20.0 270 < th dose independent rect. 23 6
957 347.57 temperature 10.0 270 > th dose independent rect. 5 18
958 347.60 wind 9.0 270 < th dose independent rect. 23 6
960 347.63 radiation 40.0 270 < th dose dependent rect. 23 6
969 347.75 precipitation 0.1 270 < th dose independent rect. 4 20
970 347.75 precipitation 0.1 270 < th dose dependent rect. 4 20
981 348.14 radiation 20.0 10 < th dose dependent rect. 10 20
991 348.66 wind 9.0 270 < th dose independent rect. 4 20
993 348.80 precipitation 0.1 270 < th dose independent rect. 24 4
994 348.80 precipitation 0.1 270 < th dose dependent rect. 24 4