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Os08g0536300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Hd1.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.07 (0.0372) R2 : 0.821
β1 : -- (--) R2dD : -- R2D : --
β2 : 4.87 (0.107) R2dC : 0.985 R2C : 0.663
β3 : 1.76 (0.106) R2dE : 0.132 R2E : -0.172
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.557 (0.0783) R2dN8 : 0.024 R2N8 : 0.00995
σ : 0.698
deviance : 224.9
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C
peak time of C : 17.5
E
wheather : temperature
threshold : 20.07
memory length : 98
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 22.9
open length of G : 5.13

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
212.55 0.685 9.08 0.226 4.85 1.75 -0.0568 -2.08 0.546 17.5 20.03 98 22.9 5.07
220.86 0.692 9.07 0.377 4.86 1.74 0.494 -- 0.558 17.5 20.09 98 23 5.07
212.42 0.679 9.08 0.222 4.86 1.76 -- -2.06 0.545 17.5 20 99 22.9 5.1
221.55 0.693 9.07 0.37 4.86 1.75 -- -- 0.566 17.5 20.09 98 22.9 5.1
373.77 0.9 8.89 1.36 -- -4.2 -- 0.0672 0.762 -- 16.7 487 22.8 7.73
313.71 0.83 9.06 0.495 4.22 -- 0.247 -- 0.6 18.2 -- -- -- --
313.86 0.83 9.06 0.492 4.22 -- -- -- 0.601 18.2 -- -- -- --
342.05 0.861 8.96 0.652 -- -4.18 -- -- 0.683 -- 15.1 470 22.8 8.01
224.9 0.698 9.07 -- 4.87 1.76 -- -- 0.557 17.5 20.07 98 22.9 5.13
1236.69 1.64 8.98 0.377 -- -- -- -- 0.509 -- -- -- -- --
320.25 0.837 9.07 -- 4.21 -- -- -- 0.546 18.2 -- -- -- --
315.62 0.827 8.82 -- -- -4.38 -- -- 0.648 -- 9.992 544 20.6 10.4
1240.44 1.64 8.99 -- -- -- -- -- 0.467 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 214.28 temperature 20.0 90 > th dose independent rect. 23 5
2 220.02 temperature 20.0 10 > th dose independent rect. 23 6
6 221.67 temperature 20.0 270 > th dose independent rect. 23 2
21 232.83 temperature 20.0 90 > th dose independent rect. 13 15
32 237.35 temperature 20.0 10 > th dose independent rect. 13 16
33 237.53 temperature 15.0 90 > th dose dependent rect. 23 5
42 240.27 temperature 15.0 10 > th dose dependent rect. 23 6
50 242.50 temperature 15.0 270 > th dose dependent rect. 23 2
52 242.52 temperature 15.0 270 > th dose dependent rect. 21 6
135 253.02 humidity 70.0 90 > th dose dependent rect. 23 5
143 254.22 humidity 80.0 10 > th dose independent rect. 24 5
149 254.85 temperature 10.0 90 > th dose dependent rect. 11 17
156 255.42 wind 3.0 90 < th dose dependent rect. 23 5
158 255.56 temperature 10.0 90 > th dose dependent rect. 13 15
162 255.92 wind 3.0 270 < th dose dependent rect. 23 2
163 255.92 humidity 70.0 10 > th dose dependent rect. 24 5
164 256.05 temperature 20.0 90 > th dose independent rect. 9 19
172 256.68 temperature 10.0 270 > th dose dependent rect. 11 15
179 257.27 humidity 80.0 90 > th dose independent rect. 23 5
191 257.83 humidity 80.0 270 > th dose independent rect. 23 3
193 258.04 humidity 70.0 270 > th dose dependent rect. 23 2
194 258.05 radiation 1.0 30 > th dose independent sin 7 NA
197 258.09 radiation 1.0 30 < th dose independent sin 7 NA
199 258.22 temperature 15.0 10 > th dose dependent rect. 13 16
217 259.06 humidity 70.0 10 > th dose dependent rect. 22 7
235 259.82 radiation 1.0 30 < th dose dependent sin 6 NA
260 260.64 wind 1.0 270 < th dose independent rect. 23 3
266 260.84 radiation 1.0 10 < th dose independent rect. 24 6
269 260.91 temperature 20.0 10 > th dose independent rect. 7 22
273 261.03 radiation 1.0 10 < th dose independent rect. 24 14
280 261.26 radiation 1.0 10 < th dose independent rect. 24 8
286 261.45 wind 9.0 10 < th dose independent rect. 5 19
287 261.45 temperature 20.0 90 > th dose independent rect. 7 21
337 262.41 radiation 1.0 10 < th dose dependent rect. 24 6
347 262.63 atmosphere 1015.0 10 < th dose dependent rect. 24 5
354 262.83 atmosphere 1015.0 10 < th dose independent rect. 24 5
361 262.98 radiation 1.0 30 < th dose dependent rect. 24 14
383 263.38 atmosphere 1015.0 90 < th dose independent rect. 23 5
392 263.50 radiation 1.0 10 < th dose dependent rect. 24 8
402 263.57 wind 9.0 10 < th dose independent rect. 24 5
403 263.57 temperature 10.0 10 > th dose independent rect. 24 5
404 263.57 temperature 30.0 10 < th dose independent rect. 24 5
405 263.57 humidity 50.0 10 > th dose independent rect. 24 5
408 263.57 atmosphere 995.0 10 > th dose independent rect. 24 5
414 263.57 temperature 10.0 10 > th dose independent rect. 5 19
425 263.65 wind 9.0 90 < th dose dependent rect. 4 9
438 263.87 precipitation 0.1 10 < th dose independent rect. 5 19
439 263.87 precipitation 0.1 10 < th dose dependent rect. 5 19
455 264.19 humidity 80.0 10 > th dose independent rect. 22 7
459 264.28 atmosphere 1015.0 270 < th dose independent rect. 23 2
482 264.79 wind 9.0 10 < th dose dependent rect. 5 8
486 264.89 atmosphere 1015.0 90 < th dose dependent rect. 23 5
487 264.91 temperature 15.0 90 > th dose independent rect. 4 20
495 265.04 atmosphere 995.0 10 > th dose independent rect. 5 19
512 265.39 precipitation 0.1 270 < th dose independent rect. 1 23
513 265.39 precipitation 0.1 270 < th dose dependent rect. 1 23
520 265.51 wind 9.0 10 < th dose dependent rect. 24 5
523 265.55 wind 3.0 90 < th dose dependent rect. 15 13
544 265.87 wind 3.0 90 < th dose dependent rect. 12 16
545 265.93 precipitation 0.1 10 < th dose independent rect. 24 5
546 265.93 precipitation 0.1 10 < th dose dependent rect. 24 5
554 266.08 wind 1.0 90 < th dose independent rect. 11 17
568 266.33 wind 1.0 90 < th dose independent rect. 21 7
570 266.34 wind 1.0 270 < th dose independent rect. 11 15
573 266.40 temperature 30.0 270 < th dose dependent rect. 16 5
618 266.88 wind 9.0 90 < th dose dependent rect. 23 5
619 266.89 humidity 50.0 10 > th dose independent rect. 5 19
624 266.93 temperature 20.0 90 > th dose independent sin 12 NA
643 267.19 atmosphere 1015.0 10 < th dose independent rect. 22 7
646 267.20 temperature 30.0 30 < th dose independent rect. 5 19
675 267.53 wind 1.0 90 < th dose independent rect. 1 4
681 267.62 radiation 1.0 30 < th dose independent rect. 22 16
685 267.66 atmosphere 1015.0 90 < th dose independent rect. 11 17
710 267.97 atmosphere 1015.0 270 < th dose dependent rect. 23 2
714 268.04 atmosphere 1015.0 10 < th dose dependent rect. 22 7
725 268.14 radiation 1.0 30 < th dose independent rect. 22 10
735 268.19 wind 9.0 270 < th dose independent rect. 24 1
736 268.19 temperature 10.0 270 > th dose independent rect. 24 1
737 268.19 temperature 30.0 270 < th dose independent rect. 24 1
738 268.19 humidity 50.0 270 > th dose independent rect. 24 1
741 268.19 atmosphere 995.0 270 > th dose independent rect. 24 1
742 268.19 radiation 1.0 270 < th dose independent rect. 24 1
750 268.19 wind 9.0 270 < th dose independent rect. 1 22
751 268.19 temperature 10.0 270 > th dose independent rect. 1 23
752 268.19 radiation 1.0 270 < th dose dependent rect. 24 1
779 268.39 precipitation 0.1 270 < th dose independent rect. 24 1
780 268.39 precipitation 0.1 270 < th dose dependent rect. 24 1
806 268.87 temperature 20.0 10 > th dose independent sin 12 NA
814 268.95 temperature 15.0 90 > th dose independent rect. 4 9
861 269.23 temperature 30.0 270 < th dose dependent rect. 15 15
886 269.31 wind 3.0 10 < th dose independent rect. 24 5
892 269.37 humidity 50.0 270 > th dose independent rect. 2 21
907 269.50 radiation 1.0 30 < th dose independent rect. 22 8